RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 SHROOM1Q2M3G4 852 aaPredicted RBP22.51■■□□□ 1.19
CLN6-220ENST00000637450 HSP90AB4PQ58FF6 505 aa22.51■■□□□ 1.19
CLN6-220ENST00000637450 U2AF1L4Q8WU68 220 aaKnown RBP22.51■■□□□ 1.19
CLN6-220ENST00000637450 TMOD4Q9NZQ9 345 aa22.51■■□□□ 1.19
CLN6-220ENST00000637450 USP17L10C9JJH3 530 aa22.5■■□□□ 1.19
CLN6-220ENST00000637450 SGPL1O95470 568 aa22.5■■□□□ 1.19
CLN6-220ENST00000637450 MAP3K12Q12852 859 aa22.5■■□□□ 1.19
CLN6-220ENST00000637450 RHPN1Q8TCX5 695 aa22.5■■□□□ 1.19
CLN6-220ENST00000637450 ZBTB21Q9ULJ3 1066 aa22.5■■□□□ 1.19
CLN6-220ENST00000637450 MAST2Q6P0Q8 1798 aa22.5■■□□□ 1.19
CLN6-220ENST00000637450 H0YGN5 161 aa22.49■■□□□ 1.19
CLN6-220ENST00000637450 USP5P45974 858 aa22.49■■□□□ 1.19
CLN6-220ENST00000637450 P2RX7Q99572 595 aaKnown RBP22.49■■□□□ 1.19
CLN6-220ENST00000637450 IL1RAPL2Q9NP60 686 aa22.49■■□□□ 1.19
CLN6-220ENST00000637450 MORF4L1Q9UBU8 362 aa22.49■■□□□ 1.19
CLN6-220ENST00000637450 GJD2Q9UKL4 321 aa22.49■■□□□ 1.19
CLN6-220ENST00000637450 MGAMO43451 1857 aa22.49■■□□□ 1.19
CLN6-220ENST00000637450 SIPA1L1O43166 1804 aa22.48■■□□□ 1.19
CLN6-220ENST00000637450 CEP290O15078 2479 aa22.48■■□□□ 1.19
CLN6-220ENST00000637450 IRX3P78415 501 aaPredicted RBP22.48■■□□□ 1.19
CLN6-220ENST00000637450 TATDN1Q6P1N9 297 aa22.48■■□□□ 1.19
CLN6-220ENST00000637450 RPAP2Q8IXW5 612 aaPredicted RBP22.48■■□□□ 1.19
CLN6-220ENST00000637450 DPF3Q92784 378 aa22.48■■□□□ 1.19
CLN6-220ENST00000637450 TAOK2Q9UL54 1235 aa22.48■■□□□ 1.19
CLN6-220ENST00000637450 COLQQ9Y215 455 aaPredicted RBP22.48■■□□□ 1.19
CLN6-220ENST00000637450 LOC285556D6RIA3 1793 aa22.48■■□□□ 1.19
CLN6-220ENST00000637450 CAPN2P17655 700 aa22.47■■□□□ 1.19
CLN6-220ENST00000637450 EHD4Q9H223 541 aa22.47■■□□□ 1.19
CLN6-220ENST00000637450 PAK6Q9NQU5 681 aaPredicted RBP22.47■■□□□ 1.19
CLN6-220ENST00000637450 HTATIP2Q9BUP3 242 aa22.46■■□□□ 1.19
CLN6-220ENST00000637450 EMILIN3Q9NT22 766 aa22.46■■□□□ 1.19
CLN6-220ENST00000637450 SERPINB13Q9UIV8 391 aa22.46■■□□□ 1.19
CLN6-220ENST00000637450 MYO5AQ9Y4I1 1855 aaKnown RBP22.45■■□□□ 1.19
CLN6-220ENST00000637450 FARP2O94887 1054 aaPredicted RBP22.45■■□□□ 1.18
CLN6-220ENST00000637450 GH2P01242 217 aa22.45■■□□□ 1.18
CLN6-220ENST00000637450 HERVK_113P62684 666 aa22.45■■□□□ 1.18
CLN6-220ENST00000637450 TTF1Q15361 905 aaPredicted RBP22.45■■□□□ 1.18
CLN6-220ENST00000637450 TTC6Q86TZ1 520 aa22.45■■□□□ 1.18
CLN6-220ENST00000637450 SIRT2Q8IXJ6 389 aa22.45■■□□□ 1.18
CLN6-220ENST00000637450 CLASRPQ8N2M8 674 aaKnown RBP22.45■■□□□ 1.18
CLN6-220ENST00000637450 KIF1BPQ96EK5 621 aa22.45■■□□□ 1.18
CLN6-220ENST00000637450 DEFB118Q96PH6 123 aa22.45■■□□□ 1.18
CLN6-220ENST00000637450 RIOK1Q9BRS2 568 aaKnown RBP22.45■■□□□ 1.18
CLN6-220ENST00000637450 ZBTB40Q9NUA8 1239 aa22.45■■□□□ 1.18
CLN6-220ENST00000637450 DDX19BQ9UMR2 479 aa22.45■■□□□ 1.18
CLN6-220ENST00000637450 ATAD5Q96QE3 1844 aa22.45■■□□□ 1.18
CLN6-220ENST00000637450 TFRCP02786 760 aaKnown RBP22.44■■□□□ 1.18
CLN6-220ENST00000637450 USP17L2Q6R6M4 530 aa22.44■■□□□ 1.18
CLN6-220ENST00000637450 GPRC5AQ8NFJ5 357 aa22.44■■□□□ 1.18
CLN6-220ENST00000637450 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.44■■□□□ 1.18
CLN6-220ENST00000637450 TXNRD2Q9NNW7 524 aa22.44■■□□□ 1.18
CLN6-220ENST00000637450 RBPJLQ9UBG7 517 aa22.44■■□□□ 1.18
CLN6-220ENST00000637450 COG6Q9Y2V7 657 aa22.44■■□□□ 1.18
CLN6-220ENST00000637450 DOCK3Q8IZD9 2030 aa22.43■■□□□ 1.18
CLN6-220ENST00000637450 PEX10O60683 326 aa22.43■■□□□ 1.18
CLN6-220ENST00000637450 HMMRO75330 724 aa22.43■■□□□ 1.18
CLN6-220ENST00000637450 HMGCRP04035 888 aa22.43■■□□□ 1.18
CLN6-220ENST00000637450 CRISPLD2Q9H0B8 497 aa22.43■■□□□ 1.18
CLN6-220ENST00000637450 CDK5RAP2Q96SN8 1893 aa22.43■■□□□ 1.18
CLN6-220ENST00000637450 FOCADQ5VW36 1801 aa22.43■■□□□ 1.18
CLN6-220ENST00000637450 MAGEB6P1A0A0J9YX57 407 aa22.42■■□□□ 1.18
CLN6-220ENST00000637450 APBB1O00213 710 aa22.42■■□□□ 1.18
CLN6-220ENST00000637450 PDE6AP16499 860 aa22.42■■□□□ 1.18
CLN6-220ENST00000637450 FXR1P51114 621 aaKnown RBP eCLIP22.42■■□□□ 1.18
CLN6-220ENST00000637450 PLCD1P51178 756 aa22.42■■□□□ 1.18
CLN6-220ENST00000637450 CERKLQ49MI3 558 aaPredicted RBP22.42■■□□□ 1.18
CLN6-220ENST00000637450 SLC9C2Q5TAH2 1124 aa22.42■■□□□ 1.18
CLN6-220ENST00000637450 RAB11FIP3O75154 756 aa22.41■■□□□ 1.18
CLN6-220ENST00000637450 IFIT2P09913 472 aaKnown RBP22.41■■□□□ 1.18
CLN6-220ENST00000637450 Q3C1V9 767 aa22.41■■□□□ 1.18
CLN6-220ENST00000637450 POTEEQ6S8J3 1075 aa22.41■■□□□ 1.18
CLN6-220ENST00000637450 GTF3C2Q8WUA4 911 aaPredicted RBP22.41■■□□□ 1.18
CLN6-220ENST00000637450 C12orf42Q96LP6 360 aa22.41■■□□□ 1.18
CLN6-220ENST00000637450 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.41■■□□□ 1.184e-8■■■■□ 25.2
CLN6-220ENST00000637450 SHMT1P34896 483 aa22.4■■□□□ 1.18
CLN6-220ENST00000637450 RAB3GAP1Q15042 981 aa22.4■■□□□ 1.18
CLN6-220ENST00000637450 ABCB5Q2M3G0 1257 aa22.4■■□□□ 1.18
CLN6-220ENST00000637450 RPTORQ8N122 1335 aa22.39■■□□□ 1.18
CLN6-220ENST00000637450 ZNF532Q9HCE3 1301 aa22.39■■□□□ 1.18
CLN6-220ENST00000637450 TCRBV5S4A2TA0A5A2 114 aa22.39■■□□□ 1.17
CLN6-220ENST00000637450 GOLIM4O00461 696 aa22.39■■□□□ 1.17
CLN6-220ENST00000637450 POLR3DP05423 398 aaPredicted RBP22.39■■□□□ 1.17
CLN6-220ENST00000637450 MAPK4P31152 587 aa22.39■■□□□ 1.17
CLN6-220ENST00000637450 ERVK-9P63128 1117 aa22.39■■□□□ 1.17
CLN6-220ENST00000637450 ERVK-24P63145 666 aa22.39■■□□□ 1.17
CLN6-220ENST00000637450 TRIM32Q13049 653 aa22.39■■□□□ 1.17
CLN6-220ENST00000637450 DNAJC2Q99543 621 aaKnown RBP22.39■■□□□ 1.17
CLN6-220ENST00000637450 NUDT12Q9BQG2 462 aa22.39■■□□□ 1.17
CLN6-220ENST00000637450 CRNKL1Q9BZJ0 848 aaKnown RBP22.39■■□□□ 1.17
CLN6-220ENST00000637450 CHMP4BQ9H444 224 aaKnown RBP22.39■■□□□ 1.17
CLN6-220ENST00000637450 CABP5Q9NP86 173 aa22.39■■□□□ 1.17
CLN6-220ENST00000637450 NR2E3Q9Y5X4 410 aa22.39■■□□□ 1.17
CLN6-220ENST00000637450 RANBP2P49792 3224 aaKnown RBP22.39■■□□□ 1.17
CLN6-220ENST00000637450 USP17L15C9J2P7 530 aa22.38■■□□□ 1.17
CLN6-220ENST00000637450 USP17L13C9JLJ4 530 aa22.38■■□□□ 1.17
CLN6-220ENST00000637450 USP17L11C9JVI0 530 aa22.38■■□□□ 1.17
CLN6-220ENST00000637450 USP17L18D6R9N7 530 aa22.38■■□□□ 1.17
CLN6-220ENST00000637450 USP17L22D6RA61 530 aa22.38■■□□□ 1.17
CLN6-220ENST00000637450 USP17L17D6RBQ6 530 aa22.38■■□□□ 1.17
CLN6-220ENST00000637450 USP17L19D6RCP7 530 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms