RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 EHD4Q9H223 541 aa16.65■□□□□ 0.26
PNKP-228ENST00000637325 TMOD4Q9NZQ9 345 aa16.65■□□□□ 0.26
PNKP-228ENST00000637325 PNMA3Q9UL41 463 aa16.65■□□□□ 0.26
PNKP-228ENST00000637325 ZBTB21Q9ULJ3 1066 aa16.65■□□□□ 0.26
PNKP-228ENST00000637325 DDX60LQ5H9U9 1706 aaKnown RBP16.65■□□□□ 0.26
PNKP-228ENST00000637325 ERC2O15083 957 aa16.64■□□□□ 0.25
PNKP-228ENST00000637325 FMNL1O95466 1100 aaPredicted RBP16.64■□□□□ 0.25
PNKP-228ENST00000637325 OSBPP22059 807 aa16.64■□□□□ 0.25
PNKP-228ENST00000637325 PLCD1P51178 756 aa16.64■□□□□ 0.25
PNKP-228ENST00000637325 CAP1Q01518 475 aa16.64■□□□□ 0.25
PNKP-228ENST00000637325 MLLT1Q03111 559 aaPredicted RBP16.64■□□□□ 0.25
PNKP-228ENST00000637325 CERKLQ49MI3 558 aaPredicted RBP16.64■□□□□ 0.25
PNKP-228ENST00000637325 TREML2Q5T2D2 321 aa16.64■□□□□ 0.25
PNKP-228ENST00000637325 ANKRD45Q5TZF3 282 aa16.64■□□□□ 0.25
PNKP-228ENST00000637325 DDRGK1Q96HY6 314 aa16.64■□□□□ 0.25
PNKP-228ENST00000637325 ARHGAP39Q9C0H5 1083 aa16.64■□□□□ 0.25
PNKP-228ENST00000637325 GNRH1P01148 92 aa16.63■□□□□ 0.25
PNKP-228ENST00000637325 GH2P01242 217 aa16.63■□□□□ 0.25
PNKP-228ENST00000637325 HOXD10P28358 340 aa16.63■□□□□ 0.25
PNKP-228ENST00000637325 PSMC4P43686 418 aa16.63■□□□□ 0.25
PNKP-228ENST00000637325 RGS19P49795 217 aa16.63■□□□□ 0.25
PNKP-228ENST00000637325 BACE1P56817 501 aa16.63■□□□□ 0.25
PNKP-228ENST00000637325 JAG1P78504 1218 aa16.63■□□□□ 0.25
PNKP-228ENST00000637325 MTMR2Q13614 643 aa16.63■□□□□ 0.25
PNKP-228ENST00000637325 AAMPQ13685 434 aa16.63■□□□□ 0.25
PNKP-228ENST00000637325 TATDN1Q6P1N9 297 aa16.63■□□□□ 0.25
PNKP-228ENST00000637325 AMOTL1Q8IY63 956 aa16.63■□□□□ 0.25
PNKP-228ENST00000637325 CABP5Q9NP86 173 aa16.63■□□□□ 0.25
PNKP-228ENST00000637325 DCP1AQ9NPI6 582 aaPredicted RBP16.63■□□□□ 0.25
PNKP-228ENST00000637325 ATP8A2Q9NTI2 1148 aa16.63■□□□□ 0.25
PNKP-228ENST00000637325 TTC41PQ6P2S7 1318 aa16.63■□□□□ 0.25
PNKP-228ENST00000637325 ADGRA2Q96PE1 1338 aa16.63■□□□□ 0.25
PNKP-228ENST00000637325 C19orf81C9J6K1 198 aa16.62■□□□□ 0.25
PNKP-228ENST00000637325 USP17L10C9JJH3 530 aa16.62■□□□□ 0.25
PNKP-228ENST00000637325 PRKAB2O43741 272 aa16.62■□□□□ 0.25
PNKP-228ENST00000637325 BCRP11274 1271 aa16.62■□□□□ 0.25
PNKP-228ENST00000637325 PRMT2P55345 433 aa16.62■□□□□ 0.25
PNKP-228ENST00000637325 RAB3GAP1Q15042 981 aa16.62■□□□□ 0.25
PNKP-228ENST00000637325 ABCB5Q2M3G0 1257 aa16.62■□□□□ 0.25
PNKP-228ENST00000637325 SHROOM1Q2M3G4 852 aaPredicted RBP16.62■□□□□ 0.25
PNKP-228ENST00000637325 LRRFIP1Q32MZ4 808 aaKnown RBP16.62■□□□□ 0.25
PNKP-228ENST00000637325 SH3D19Q5HYK7 790 aa16.62■□□□□ 0.25
PNKP-228ENST00000637325 NBPF11Q86T75 865 aa16.62■□□□□ 0.25
PNKP-228ENST00000637325 KBTBD3Q8NAB2 608 aa16.62■□□□□ 0.25
PNKP-228ENST00000637325 GCC1Q96CN9 775 aa16.62■□□□□ 0.25
PNKP-228ENST00000637325 PTCH2Q9Y6C5 1203 aa16.62■□□□□ 0.25
PNKP-228ENST00000637325 SLC4A4Q9Y6R1 1079 aa16.62■□□□□ 0.25
PNKP-228ENST00000637325 PDE4DIPQ5VU43 2346 aa16.61■□□□□ 0.25
PNKP-228ENST00000637325 GLRX3O76003 335 aaKnown RBP16.61■□□□□ 0.25
PNKP-228ENST00000637325 CHGBP05060 677 aa16.61■□□□□ 0.25
PNKP-228ENST00000637325 FCGRTP55899 365 aa16.61■□□□□ 0.25
PNKP-228ENST00000637325 HDAC1Q13547 482 aaPredicted RBP16.61■□□□□ 0.25
PNKP-228ENST00000637325 SLC9C1Q4G0N8 1177 aa16.61■□□□□ 0.25
PNKP-228ENST00000637325 FEZ1Q99689 392 aa16.61■□□□□ 0.25
PNKP-228ENST00000637325 MPHOSPH10O00566 681 aaKnown RBP16.6■□□□□ 0.25
PNKP-228ENST00000637325 RNF113AO15541 343 aaKnown RBP16.6■□□□□ 0.25
PNKP-228ENST00000637325 CYP2D6P10635 497 aa16.6■□□□□ 0.25
PNKP-228ENST00000637325 MX1P20591 662 aa16.6■□□□□ 0.25
PNKP-228ENST00000637325 SHMT1P34896 483 aa16.6■□□□□ 0.25
PNKP-228ENST00000637325 IRX3P78415 501 aaPredicted RBP16.6■□□□□ 0.25
PNKP-228ENST00000637325 USP17L2Q6R6M4 530 aa16.6■□□□□ 0.25
PNKP-228ENST00000637325 OTUD7AQ8TE49 926 aaPredicted RBP16.6■□□□□ 0.25
PNKP-228ENST00000637325 TRIM47Q96LD4 638 aa16.6■□□□□ 0.25
PNKP-228ENST00000637325 PUS7LQ9H0K6 701 aaKnown RBP16.6■□□□□ 0.25
PNKP-228ENST00000637325 ZFYP08048 801 aaPredicted RBP16.59■□□□□ 0.25
PNKP-228ENST00000637325 GCLCP48506 637 aaPredicted RBP16.59■□□□□ 0.25
PNKP-228ENST00000637325 GABPAQ06546 454 aa16.59■□□□□ 0.25
PNKP-228ENST00000637325 ANKRD13CQ8N6S4 541 aa16.59■□□□□ 0.25
PNKP-228ENST00000637325 RAET1EQ8TD07 263 aa16.59■□□□□ 0.25
PNKP-228ENST00000637325 APPBP2Q92624 585 aa16.59■□□□□ 0.25
PNKP-228ENST00000637325 ASCC2Q9H1I8 757 aaPredicted RBP16.59■□□□□ 0.25
PNKP-228ENST00000637325 RWDD1Q9H446 243 aaPredicted RBP16.59■□□□□ 0.25
PNKP-228ENST00000637325 SRRDQ9UH36 339 aa16.59■□□□□ 0.25
PNKP-228ENST00000637325 SWAP70Q9UH65 585 aa16.59■□□□□ 0.25
PNKP-228ENST00000637325 CTGFP29279 349 aa16.58■□□□□ 0.24
PNKP-228ENST00000637325 ZYXQ15942 572 aaKnown RBP16.58■□□□□ 0.24
PNKP-228ENST00000637325 ARMC5Q96C12 935 aa16.58■□□□□ 0.24
PNKP-228ENST00000637325 FSD1Q9BTV5 496 aa16.58■□□□□ 0.24
PNKP-228ENST00000637325 TAOK2Q9UL54 1235 aa16.58■□□□□ 0.24
PNKP-228ENST00000637325 SUPT16HQ9Y5B9 1047 aaKnown RBP16.58■□□□□ 0.24
PNKP-228ENST00000637325 MYPNQ86TC9 1320 aa16.58■□□□□ 0.24
PNKP-228ENST00000637325 CENPFP49454 3210 aa16.58■□□□□ 0.24
PNKP-228ENST00000637325 RBBP6Q7Z6E9 1792 aaKnown RBP16.57■□□□□ 0.24
PNKP-228ENST00000637325 USP17L12C9JPN9 530 aa16.57■□□□□ 0.24
PNKP-228ENST00000637325 USP17L21D6R901 530 aa16.57■□□□□ 0.24
PNKP-228ENST00000637325 HOXA7P31268 230 aaPredicted RBP16.57■□□□□ 0.24
PNKP-228ENST00000637325 USP14P54578 494 aa16.57■□□□□ 0.24
PNKP-228ENST00000637325 EVX2Q03828 476 aa16.57■□□□□ 0.24
PNKP-228ENST00000637325 EXOC6Q8TAG9 804 aa16.57■□□□□ 0.24
PNKP-228ENST00000637325 PI4K2BQ8TCG2 481 aa16.57■□□□□ 0.24
PNKP-228ENST00000637325 DYNLL2Q96FJ2 89 aa16.57■□□□□ 0.24
PNKP-228ENST00000637325 STRBPQ96SI9 672 aaKnown RBP16.57■□□□□ 0.24
PNKP-228ENST00000637325 TMEM106CQ9BVX2 250 aa16.57■□□□□ 0.24
PNKP-228ENST00000637325 HTTP42858 3142 aa16.57■□□□□ 0.24
PNKP-228ENST00000637325 CYP2D7A0A087X1C5 515 aa16.56■□□□□ 0.24
PNKP-228ENST00000637325 TNPO2O14787 897 aaKnown RBP16.56■□□□□ 0.24
PNKP-228ENST00000637325 SEPT2Q15019 361 aa16.56■□□□□ 0.24
PNKP-228ENST00000637325 FAM110CQ1W6H9 321 aa16.56■□□□□ 0.24
PNKP-228ENST00000637325 C12orf60Q5U649 245 aa16.56■□□□□ 0.24
PNKP-228ENST00000637325 SLC44A5Q8NCS7 719 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms