RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 NID2Q14112 1375 aa21.58■■□□□ 1.05
CLN3-254ENST00000637050 SHTN1A0MZ66 631 aa21.58■■□□□ 1.05
CLN3-254ENST00000637050 DDTLA6NHG4 134 aaPredicted RBP21.58■■□□□ 1.05
CLN3-254ENST00000637050 ZBTB43O43298 467 aa21.58■■□□□ 1.05
CLN3-254ENST00000637050 DHX16O60231 1041 aaKnown RBP21.58■■□□□ 1.05
CLN3-254ENST00000637050 FKBP1CQ5VVH2 108 aa21.58■■□□□ 1.05
CLN3-254ENST00000637050 SH3BP5LQ7L8J4 393 aa21.58■■□□□ 1.05
CLN3-254ENST00000637050 NSUN7Q8NE18 718 aaKnown RBP21.58■■□□□ 1.05
CLN3-254ENST00000637050 GJA3Q9Y6H8 435 aa21.58■■□□□ 1.05
CLN3-254ENST00000637050 WNT10BO00744 389 aa21.57■■□□□ 1.04
CLN3-254ENST00000637050 NMT2O60551 498 aa21.57■■□□□ 1.04
CLN3-254ENST00000637050 DTNBO60941 627 aa21.57■■□□□ 1.04
CLN3-254ENST00000637050 TSPY3P0CV98 308 aa21.57■■□□□ 1.04
CLN3-254ENST00000637050 TSPY8P0CW00 308 aa21.57■■□□□ 1.04
CLN3-254ENST00000637050 METAP2P50579 478 aaKnown RBP eCLIP21.57■■□□□ 1.04
CLN3-254ENST00000637050 CCDC178Q5BJE1 867 aa21.57■■□□□ 1.04
CLN3-254ENST00000637050 IFIT1BQ5T764 474 aaKnown RBP21.57■■□□□ 1.04
CLN3-254ENST00000637050 SYNE3Q6ZMZ3 975 aa21.57■■□□□ 1.04
CLN3-254ENST00000637050 IL17RBQ9NRM6 502 aa21.57■■□□□ 1.04
CLN3-254ENST00000637050 PI4KBQ9UBF8 816 aa21.57■■□□□ 1.04
CLN3-254ENST00000637050 ZDHHC9Q9Y397 364 aa21.57■■□□□ 1.04
CLN3-254ENST00000637050 SIPA1L1O43166 1804 aa21.57■■□□□ 1.04
CLN3-254ENST00000637050 CLRN2A0PK11 232 aa21.56■■□□□ 1.04
CLN3-254ENST00000637050 JAK2O60674 1132 aa21.56■■□□□ 1.04
CLN3-254ENST00000637050 RCSD1Q6JBY9 416 aa21.56■■□□□ 1.04
CLN3-254ENST00000637050 MICU3Q86XE3 530 aa21.56■■□□□ 1.04
CLN3-254ENST00000637050 RAB11FIP4Q86YS3 637 aa21.56■■□□□ 1.04
CLN3-254ENST00000637050 ZNF654Q8IZM8 581 aa21.56■■□□□ 1.04
CLN3-254ENST00000637050 ANKS1AQ92625 1134 aa21.56■■□□□ 1.04
CLN3-254ENST00000637050 MYO1BO43795 1136 aa21.56■■□□□ 1.04
CLN3-254ENST00000637050 BRD1O95696 1058 aa21.56■■□□□ 1.04
CLN3-254ENST00000637050 DGKHQ86XP1 1220 aa21.56■■□□□ 1.04
CLN3-254ENST00000637050 MICALL2Q8IY33 904 aa21.56■■□□□ 1.04
CLN3-254ENST00000637050 NEDD1Q8NHV4 660 aa21.56■■□□□ 1.04
CLN3-254ENST00000637050 MYL10Q9BUA6 226 aa21.56■■□□□ 1.04
CLN3-254ENST00000637050 CNOT7Q9UIV1 285 aaKnown RBP21.56■■□□□ 1.04
CLN3-254ENST00000637050 PTPDC1A2A3K4 754 aa21.55■■□□□ 1.04
CLN3-254ENST00000637050 GOLGA8AA7E2F4 631 aa21.55■■□□□ 1.04
CLN3-254ENST00000637050 SYT1P21579 422 aa21.55■■□□□ 1.04
CLN3-254ENST00000637050 SHMT1P34896 483 aa21.55■■□□□ 1.04
CLN3-254ENST00000637050 HMGN5P82970 282 aaKnown RBP21.55■■□□□ 1.04
CLN3-254ENST00000637050 NBPF9Q3BBW0 867 aa21.55■■□□□ 1.04
CLN3-254ENST00000637050 METTL16Q86W50 562 aaKnown RBP21.55■■□□□ 1.04
CLN3-254ENST00000637050 ZSCAN29Q8IWY8 852 aaPredicted RBP21.55■■□□□ 1.04
CLN3-254ENST00000637050 GPC2Q8N158 579 aa21.55■■□□□ 1.04
CLN3-254ENST00000637050 TNPO1Q92973 898 aaKnown RBP21.55■■□□□ 1.04
CLN3-254ENST00000637050 FAM217BQ9NTX9 383 aaPredicted RBP21.55■■□□□ 1.04
CLN3-254ENST00000637050 PLIN4Q96Q06 1357 aa21.55■■□□□ 1.04
CLN3-254ENST00000637050 CNTNAP1P78357 1384 aa21.54■■□□□ 1.04
CLN3-254ENST00000637050 TCP10L2B9ZVM9 353 aa21.54■■□□□ 1.04
CLN3-254ENST00000637050 RXRAP19793 462 aa21.54■■□□□ 1.04
CLN3-254ENST00000637050 FOXP4Q8IVH2 680 aaPredicted RBP21.54■■□□□ 1.04
CLN3-254ENST00000637050 FAM151AQ8WW52 585 aa21.54■■□□□ 1.04
CLN3-254ENST00000637050 PDIA4P13667 645 aaKnown RBP21.53■■□□□ 1.04
CLN3-254ENST00000637050 CDC27P30260 824 aa21.53■■□□□ 1.04
CLN3-254ENST00000637050 FAM83AQ86UY5 434 aa21.53■■□□□ 1.04
CLN3-254ENST00000637050 DNAJC18Q9H819 358 aa21.53■■□□□ 1.04
CLN3-254ENST00000637050 CPLX1O14810 134 aa21.53■■□□□ 1.04
CLN3-254ENST00000637050 STX6O43752 255 aa21.53■■□□□ 1.04
CLN3-254ENST00000637050 EGFRP00533 1210 aa21.53■■□□□ 1.04
CLN3-254ENST00000637050 PDCP20941 246 aa21.53■■□□□ 1.04
CLN3-254ENST00000637050 ADD1P35611 737 aaKnown RBP21.53■■□□□ 1.04
CLN3-254ENST00000637050 CATIPQ7Z7H3 387 aa21.53■■□□□ 1.04
CLN3-254ENST00000637050 CRACR2BQ8N4Y2 399 aaPredicted RBP21.53■■□□□ 1.04
CLN3-254ENST00000637050 RNF181Q9P0P0 153 aa21.53■■□□□ 1.04
CLN3-254ENST00000637050 WDR33Q9C0J8 1336 aaKnown RBP21.52■■□□□ 1.04
CLN3-254ENST00000637050 DDAH1O94760 285 aa21.52■■□□□ 1.04
CLN3-254ENST00000637050 NOVP48745 357 aa21.52■■□□□ 1.04
CLN3-254ENST00000637050 TROAPQ12815 778 aa21.52■■□□□ 1.04
CLN3-254ENST00000637050 PPP2R5BQ15173 497 aa21.52■■□□□ 1.04
CLN3-254ENST00000637050 NTRK3Q16288 839 aa21.52■■□□□ 1.04
CLN3-254ENST00000637050 LARP1BQ659C4 914 aaKnown RBP21.52■■□□□ 1.04
CLN3-254ENST00000637050 CCDC144CPQ8IYA2 1237 aa21.52■■□□□ 1.04
CLN3-254ENST00000637050 FANCBQ8NB91 859 aa21.52■■□□□ 1.04
CLN3-254ENST00000637050 DDX11Q96FC9 970 aa21.52■■□□□ 1.04
CLN3-254ENST00000637050 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.52■■□□□ 1.04
CLN3-254ENST00000637050 VEZTQ9HBM0 779 aa21.52■■□□□ 1.04
CLN3-254ENST00000637050 MYH8P13535 1937 aa21.52■■□□□ 1.04
CLN3-254ENST00000637050 CALM1P0DP23 149 aa21.51■■□□□ 1.03
CLN3-254ENST00000637050 CALM2P0DP24 149 aa21.51■■□□□ 1.03
CLN3-254ENST00000637050 CALM3P0DP25 149 aa21.51■■□□□ 1.03
CLN3-254ENST00000637050 RTN1Q16799 776 aa21.51■■□□□ 1.03
CLN3-254ENST00000637050 SAMD7Q7Z3H4 446 aa21.51■■□□□ 1.03
CLN3-254ENST00000637050 CCDC17Q96LX7 622 aa21.51■■□□□ 1.03
CLN3-254ENST00000637050 CCDC196A0A1B0GTZ2 297 aa21.5■■□□□ 1.03
CLN3-254ENST00000637050 CDKL5O76039 1030 aa21.5■■□□□ 1.03
CLN3-254ENST00000637050 FDPSP14324 419 aaKnown RBP21.5■■□□□ 1.03
CLN3-254ENST00000637050 AKR1B1P15121 316 aa21.5■■□□□ 1.03
CLN3-254ENST00000637050 RBM26Q5T8P6 1007 aaKnown RBP21.5■■□□□ 1.03
CLN3-254ENST00000637050 TATDN1Q6P1N9 297 aa21.5■■□□□ 1.03
CLN3-254ENST00000637050 CPLX2Q6PUV4 134 aaKnown RBP21.5■■□□□ 1.03
CLN3-254ENST00000637050 CLEC17AQ6ZS10 378 aa21.5■■□□□ 1.03
CLN3-254ENST00000637050 NUP133Q8WUM0 1156 aa21.5■■□□□ 1.03
CLN3-254ENST00000637050 CSRNP1Q96S65 589 aa21.5■■□□□ 1.03
CLN3-254ENST00000637050 GPRC5DQ9NZD1 345 aa21.5■■□□□ 1.03
CLN3-254ENST00000637050 KIF3AQ9Y496 699 aa21.5■■□□□ 1.03
CLN3-254ENST00000637050 IGKV6D-41A0A0C4DH26 115 aa21.5■■□□□ 1.03
CLN3-254ENST00000637050 H7C1D1 291 aa21.5■■□□□ 1.03
CLN3-254ENST00000637050 SLURP2P0DP57 97 aa21.5■■□□□ 1.03
CLN3-254ENST00000637050 NFKBIBQ15653 356 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms