RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PTCD1O75127 700 aaKnown RBP4.56□□□□□ -1.68
SCN1A-214ENST00000637038 APPP05067 770 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 CMA1P23946 247 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 PDIA3P30101 505 aaKnown RBP4.56□□□□□ -1.68
SCN1A-214ENST00000637038 MYL5Q02045 173 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 CFAP100Q494V2 611 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 JAKMIP3Q5VZ66 844 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 ANO1Q5XXA6 986 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 CCDC102BQ68D86 513 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 MAST2Q6P0Q8 1798 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 TMCO3Q6UWJ1 677 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 APPBP2Q92624 585 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 HOOK2Q96ED9 719 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 ZNF496Q96IT1 587 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-214ENST00000637038 LRRC2Q9BYS8 371 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 NACAP1Q9BZK3 213 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 POTEB2H3BUK9 544 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 FANCGO15287 622 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 UQCRFS1P1P0C7P4 283 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 HSPD1P10809 573 aaKnown RBP4.56□□□□□ -1.68
SCN1A-214ENST00000637038 METAP2P50579 478 aaKnown RBP eCLIP4.56□□□□□ -1.68
SCN1A-214ENST00000637038 GUCY1B3Q02153 619 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 NCBP1Q09161 790 aaKnown RBP4.56□□□□□ -1.68
SCN1A-214ENST00000637038 IFIT5Q13325 482 aaKnown RBP4.56□□□□□ -1.68
SCN1A-214ENST00000637038 IQCB1Q15051 598 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 NBPF20Q3BBV1 942 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 FILIP1LQ4L180 1135 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 STYK1Q6J9G0 422 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 FBXL16Q8N461 479 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 KLHDC4Q8TBB5 520 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 FBXW7Q969H0 707 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 TMEM87BQ96K49 555 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 ACBD3Q9H3P7 528 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 KCND1Q9NSA2 647 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 H7C1D1 291 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 CTDNEP1O95476 244 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 BMP15O95972 392 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 U2AF2P26368 475 aaKnown RBP eCLIP4.56□□□□□ -1.683e-8■■■■□ 20.2
SCN1A-214ENST00000637038 MYSM1Q5VVJ2 828 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 C11orf57Q6ZUT1 292 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-214ENST00000637038 NLGN2Q8NFZ4 835 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 HELBQ8NG08 1087 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-214ENST00000637038 PSMD1Q99460 953 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 HSD3B7Q9H2F3 369 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 CNNM2Q9H8M5 875 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 BRMS1Q9HCU9 246 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 TRMT1Q9NXH9 659 aaKnown RBP4.56□□□□□ -1.68
SCN1A-214ENST00000637038 TMOD3Q9NYL9 352 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 IFNKQ9P0W0 207 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 CALCOCO1Q9P1Z2 691 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 PCDHA7Q9UN72 937 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 TAF1LQ8IZX4 1826 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 LTBP1Q14766 1721 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 A0A1B0GUL7 405 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 H7C1W4 665 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 CUTAO60888 179 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 DTNBO60941 627 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 IARSP41252 1262 aaKnown RBP4.55□□□□□ -1.68
SCN1A-214ENST00000637038 UBASH3AP57075 661 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 EXOSC10Q01780 885 aaKnown RBP4.55□□□□□ -1.68
SCN1A-214ENST00000637038 TUBB2AQ13885 445 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 EAPPQ56P03 285 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-214ENST00000637038 MARCH10Q8NA82 808 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-214ENST00000637038 LINC00301Q8NCQ3 95 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 CNNM3Q8NE01 707 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 FBXO18Q8NFZ0 1043 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 SMARCE1Q969G3 411 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 PYM1Q9BRP8 204 aaKnown RBP4.55□□□□□ -1.68
SCN1A-214ENST00000637038 ALG1Q9BT22 464 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 TUBB2BQ9BVA1 445 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 TSPYL1Q9H0U9 437 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 MAST3O60307 1309 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 PHLPP2Q6ZVD8 1323 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 A0A0G2JLW4 131 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 PPP6R2O75170 966 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 ZNF202O95125 648 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 MMP10P09238 476 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 EPHX2P34913 555 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 SSRP1Q08945 709 aaKnown RBP4.55□□□□□ -1.68
SCN1A-214ENST00000637038 CHRNA2Q15822 529 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 METTL24Q5JXM2 366 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 FMR1NBQ8N0W7 255 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-214ENST00000637038 EDC3Q96F86 508 aaKnown RBP4.55□□□□□ -1.68
SCN1A-214ENST00000637038 NRBP1Q9UHY1 535 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 DDX41Q9UJV9 622 aaKnown RBP4.55□□□□□ -1.68
SCN1A-214ENST00000637038 RIC1Q4ADV7 1423 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 ZMYM6O95789 1325 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 GOLGA8AA7E2F4 631 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 VGLL3A8MV65 326 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 ERVV-2B6SEH9 535 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 ZBTB43O43298 467 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 ATP8B1O43520 1251 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 ERLIN1O75477 346 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 FANCCQ00597 558 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 FAM109BQ6ICB4 259 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-214ENST00000637038 STOX1Q6ZVD7 989 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 PPFIBP1Q86W92 1011 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 TMTC2Q8N394 836 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 TSC1Q92574 1164 aa4.55□□□□□ -1.68
SCN1A-214ENST00000637038 MPHOSPH8Q99549 860 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms