RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 CDKL5O76039 1030 aa19.69■□□□□ 0.74
CLN3-252ENST00000636907 CFAP100Q494V2 611 aa19.69■□□□□ 0.74
CLN3-252ENST00000636907 IFFO2Q5TF58 517 aa19.69■□□□□ 0.74
CLN3-252ENST00000636907 CPLX2Q6PUV4 134 aaKnown RBP19.69■□□□□ 0.74
CLN3-252ENST00000636907 FERMT3Q86UX7 667 aa19.69■□□□□ 0.74
CLN3-252ENST00000636907 ZNF444Q8N0Y2 327 aaPredicted RBP19.69■□□□□ 0.74
CLN3-252ENST00000636907 NUP133Q8WUM0 1156 aa19.69■□□□□ 0.74
CLN3-252ENST00000636907 GMLQ99445 158 aa19.69■□□□□ 0.74
CLN3-252ENST00000636907 ZNF287Q9HBT7 754 aa19.69■□□□□ 0.74
CLN3-252ENST00000636907 IL17RBQ9NRM6 502 aa19.69■□□□□ 0.74
CLN3-252ENST00000636907 ATP6V1DQ9Y5K8 247 aa19.69■□□□□ 0.74
CLN3-252ENST00000636907 RTN1Q16799 776 aa19.68■□□□□ 0.74
CLN3-252ENST00000636907 TTC6Q86TZ1 520 aa19.68■□□□□ 0.74
CLN3-252ENST00000636907 LMBRD1Q9NUN5 540 aa19.68■□□□□ 0.74
CLN3-252ENST00000636907 TSPY3P0CV98 308 aa19.68■□□□□ 0.74
CLN3-252ENST00000636907 TSPY8P0CW00 308 aa19.68■□□□□ 0.74
CLN3-252ENST00000636907 CACNB3P54284 484 aa19.68■□□□□ 0.74
CLN3-252ENST00000636907 RCSD1Q6JBY9 416 aa19.68■□□□□ 0.74
CLN3-252ENST00000636907 FANCBQ8NB91 859 aa19.68■□□□□ 0.74
CLN3-252ENST00000636907 PHKBQ93100 1093 aa19.68■□□□□ 0.74
CLN3-252ENST00000636907 ZBTB12Q9Y330 459 aaPredicted RBP19.68■□□□□ 0.74
CLN3-252ENST00000636907 PRPF40AO75400 957 aaKnown RBP19.67■□□□□ 0.74
CLN3-252ENST00000636907 GABPAQ06546 454 aa19.67■□□□□ 0.74
CLN3-252ENST00000636907 CATIPQ7Z7H3 387 aa19.67■□□□□ 0.74
CLN3-252ENST00000636907 ZFPM1Q8IX07 1006 aa19.67■□□□□ 0.74
CLN3-252ENST00000636907 IDI2Q9BXS1 227 aa19.67■□□□□ 0.74
CLN3-252ENST00000636907 TCP11L1Q9NUJ3 509 aa19.67■□□□□ 0.74
CLN3-252ENST00000636907 CXCL9Q07325 125 aa19.66■□□□□ 0.74
CLN3-252ENST00000636907 TROAPQ12815 778 aa19.66■□□□□ 0.74
CLN3-252ENST00000636907 RESTQ13127 1097 aa19.66■□□□□ 0.74
CLN3-252ENST00000636907 JDP2Q8WYK2 163 aa19.66■□□□□ 0.74
CLN3-252ENST00000636907 PRMT6Q96LA8 375 aaPredicted RBP19.66■□□□□ 0.74
CLN3-252ENST00000636907 SPON1Q9HCB6 807 aa19.66■□□□□ 0.74
CLN3-252ENST00000636907 FAM198AQ9UFP1 575 aa19.66■□□□□ 0.74
CLN3-252ENST00000636907 CNPY2Q9Y2B0 182 aa19.66■□□□□ 0.74
CLN3-252ENST00000636907 CCDC196A0A1B0GTZ2 297 aa19.65■□□□□ 0.74
CLN3-252ENST00000636907 DDAH1O94760 285 aa19.65■□□□□ 0.74
CLN3-252ENST00000636907 IFNAR1P17181 557 aa19.65■□□□□ 0.74
CLN3-252ENST00000636907 DNM1Q05193 864 aaKnown RBP19.65■□□□□ 0.74
CLN3-252ENST00000636907 DGKHQ86XP1 1220 aa19.65■□□□□ 0.74
CLN3-252ENST00000636907 ANKS1AQ92625 1134 aa19.65■□□□□ 0.74
CLN3-252ENST00000636907 TDRD3Q9H7E2 651 aaKnown RBP19.65■□□□□ 0.74
CLN3-252ENST00000636907 HDAC9Q9UKV0 1011 aa19.65■□□□□ 0.74
CLN3-252ENST00000636907 LTBP3Q9NS15 1303 aa19.65■□□□□ 0.74
CLN3-252ENST00000636907 ARFGEF1Q9Y6D6 1849 aa19.65■□□□□ 0.74
CLN3-252ENST00000636907 NPM3O75607 178 aaKnown RBP19.65■□□□□ 0.74
CLN3-252ENST00000636907 FMNL1O95466 1100 aaPredicted RBP19.65■□□□□ 0.74
CLN3-252ENST00000636907 GUCY1B3Q02153 619 aa19.65■□□□□ 0.74
CLN3-252ENST00000636907 RASSF7Q02833 373 aa19.65■□□□□ 0.74
CLN3-252ENST00000636907 TCP10Q12799 353 aa19.65■□□□□ 0.74
CLN3-252ENST00000636907 CCDC178Q5BJE1 867 aa19.65■□□□□ 0.74
CLN3-252ENST00000636907 AGBL3Q8NEM8 1001 aa19.65■□□□□ 0.74
CLN3-252ENST00000636907 C8orf76Q96K31 380 aa19.65■□□□□ 0.74
CLN3-252ENST00000636907 GDPD2Q9HCC8 539 aa19.65■□□□□ 0.74
CLN3-252ENST00000636907 STK36Q9NRP7 1315 aa19.64■□□□□ 0.74
CLN3-252ENST00000636907 HLA-DOAP06340 250 aa19.64■□□□□ 0.73
CLN3-252ENST00000636907 CALM1P0DP23 149 aa19.64■□□□□ 0.73
CLN3-252ENST00000636907 CALM2P0DP24 149 aa19.64■□□□□ 0.73
CLN3-252ENST00000636907 CALM3P0DP25 149 aa19.64■□□□□ 0.73
CLN3-252ENST00000636907 PPP2R5BQ15173 497 aa19.64■□□□□ 0.73
CLN3-252ENST00000636907 SKOR2Q2VWA4 1001 aaPredicted RBP19.64■□□□□ 0.73
CLN3-252ENST00000636907 CIAPIN1Q6FI81 312 aa19.64■□□□□ 0.73
CLN3-252ENST00000636907 FAM173BQ6P4H8 233 aa19.64■□□□□ 0.73
CLN3-252ENST00000636907 NEDD1Q8NHV4 660 aa19.64■□□□□ 0.73
CLN3-252ENST00000636907 SLC26A6Q9BXS9 759 aa19.64■□□□□ 0.73
CLN3-252ENST00000636907 SERPINB13Q9UIV8 391 aa19.64■□□□□ 0.73
CLN3-252ENST00000636907 TCHHQ07283 1943 aa19.64■□□□□ 0.73
CLN3-252ENST00000636907 SPDYE2BA6NHP3 402 aa19.63■□□□□ 0.73
CLN3-252ENST00000636907 SPDYE6P0CI01 402 aa19.63■□□□□ 0.73
CLN3-252ENST00000636907 PRELPP51888 382 aa19.63■□□□□ 0.73
CLN3-252ENST00000636907 SSRP1Q08945 709 aaKnown RBP19.63■□□□□ 0.73
CLN3-252ENST00000636907 OTUD7BQ6GQQ9 843 aa19.63■□□□□ 0.73
CLN3-252ENST00000636907 NBPF11Q86T75 865 aa19.63■□□□□ 0.73
CLN3-252ENST00000636907 CMTR1Q8N1G2 835 aaKnown RBP19.63■□□□□ 0.73
CLN3-252ENST00000636907 OGFOD1Q8N543 542 aa19.63■□□□□ 0.73
CLN3-252ENST00000636907 AIFM3Q96NN9 605 aa19.63■□□□□ 0.73
CLN3-252ENST00000636907 ALG1Q9BT22 464 aa19.63■□□□□ 0.73
CLN3-252ENST00000636907 KAT14Q9H8E8 782 aa19.63■□□□□ 0.73
CLN3-252ENST00000636907 SWAP70Q9UH65 585 aa19.63■□□□□ 0.73
CLN3-252ENST00000636907 UBE2Q2LH0YL09 131 aa19.62■□□□□ 0.73
CLN3-252ENST00000636907 CRACR2BQ8N4Y2 399 aaPredicted RBP19.62■□□□□ 0.73
CLN3-252ENST00000636907 TMEM87AQ8NBN3 555 aa19.62■□□□□ 0.73
CLN3-252ENST00000636907 FBXO18Q8NFZ0 1043 aa19.62■□□□□ 0.73
CLN3-252ENST00000636907 EHD4Q9H223 541 aa19.62■□□□□ 0.73
CLN3-252ENST00000636907 ZSCAN16Q9H4T2 348 aaPredicted RBP19.62■□□□□ 0.73
CLN3-252ENST00000636907 GJB4Q9NTQ9 266 aa19.62■□□□□ 0.73
CLN3-252ENST00000636907 RBM28Q9NW13 759 aaKnown RBP19.62■□□□□ 0.73
CLN3-252ENST00000636907 SIPA1L1O43166 1804 aa19.62■□□□□ 0.73
CLN3-252ENST00000636907 DDTLA6NHG4 134 aaPredicted RBP19.62■□□□□ 0.73
CLN3-252ENST00000636907 NCLP19338 710 aaKnown RBP19.62■□□□□ 0.73
CLN3-252ENST00000636907 DLGAP5Q15398 846 aa19.62■□□□□ 0.73
CLN3-252ENST00000636907 SH3BP5LQ7L8J4 393 aa19.62■□□□□ 0.73
CLN3-252ENST00000636907 USP48Q86UV5 1035 aa19.62■□□□□ 0.73
CLN3-252ENST00000636907 CCDC82Q8N4S0 544 aa19.62■□□□□ 0.73
CLN3-252ENST00000636907 DHX36Q9H2U1 1008 aaKnown RBP19.62■□□□□ 0.73
CLN3-252ENST00000636907 FIBPO43427 364 aa19.61■□□□□ 0.73
CLN3-252ENST00000636907 PLEKHA8P1O95397 391 aa19.61■□□□□ 0.73
CLN3-252ENST00000636907 SHMT1P34896 483 aa19.61■□□□□ 0.73
CLN3-252ENST00000636907 PNMA1Q8ND90 353 aa19.61■□□□□ 0.73
CLN3-252ENST00000636907 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms