RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 TMOD2Q9NZR1 351 aa12.35□□□□□ -0.43
CLN3-248ENST00000636355 MYH4Q9Y623 1939 aa12.35□□□□□ -0.43
CLN3-248ENST00000636355 SPDYE2BA6NHP3 402 aa12.34□□□□□ -0.43
CLN3-248ENST00000636355 F8W031 263 aaPredicted RBP12.34□□□□□ -0.43
CLN3-248ENST00000636355 SPDYE6P0CI01 402 aa12.34□□□□□ -0.43
CLN3-248ENST00000636355 SCNN1DP51172 638 aa12.34□□□□□ -0.43
CLN3-248ENST00000636355 RTN1Q16799 776 aa12.34□□□□□ -0.43
CLN3-248ENST00000636355 TMEM87AQ8NBN3 555 aa12.34□□□□□ -0.43
CLN3-248ENST00000636355 ZSCAN16Q9H4T2 348 aaPredicted RBP12.34□□□□□ -0.43
CLN3-248ENST00000636355 MKNK2Q9HBH9 465 aa12.34□□□□□ -0.43
CLN3-248ENST00000636355 GPHNQ9NQX3 736 aaPredicted RBP12.34□□□□□ -0.43
CLN3-248ENST00000636355 USP40Q9NVE5 1235 aa12.34□□□□□ -0.43
CLN3-248ENST00000636355 RBM27Q9P2N5 1060 aaKnown RBP12.34□□□□□ -0.43
CLN3-248ENST00000636355 SERPINB13Q9UIV8 391 aa12.34□□□□□ -0.43
CLN3-248ENST00000636355 NAP1L2Q9ULW6 460 aaPredicted RBP12.34□□□□□ -0.43
CLN3-248ENST00000636355 PSMD14O00487 310 aa12.33□□□□□ -0.44
CLN3-248ENST00000636355 JAK2O60674 1132 aa12.33□□□□□ -0.44
CLN3-248ENST00000636355 TSPY3P0CV98 308 aa12.33□□□□□ -0.44
CLN3-248ENST00000636355 TSPY8P0CW00 308 aa12.33□□□□□ -0.44
CLN3-248ENST00000636355 CYP2D6P10635 497 aa12.33□□□□□ -0.44
CLN3-248ENST00000636355 RASA1P20936 1047 aa12.33□□□□□ -0.44
CLN3-248ENST00000636355 KIF5BP33176 963 aa12.33□□□□□ -0.44
CLN3-248ENST00000636355 NOVP48745 357 aa12.33□□□□□ -0.44
CLN3-248ENST00000636355 CDK8P49336 464 aa12.33□□□□□ -0.44
CLN3-248ENST00000636355 ATL3Q6DD88 541 aa12.33□□□□□ -0.44
CLN3-248ENST00000636355 CIAPIN1Q6FI81 312 aa12.33□□□□□ -0.44
CLN3-248ENST00000636355 TRIM22Q8IYM9 498 aa12.33□□□□□ -0.44
CLN3-248ENST00000636355 ZNF444Q8N0Y2 327 aaPredicted RBP12.33□□□□□ -0.44
CLN3-248ENST00000636355 FAM177A1Q8N128 213 aaPredicted RBP12.33□□□□□ -0.44
CLN3-248ENST00000636355 CCDC17Q96LX7 622 aa12.33□□□□□ -0.44
CLN3-248ENST00000636355 NCOA5Q9HCD5 579 aaKnown RBP12.33□□□□□ -0.44
CLN3-248ENST00000636355 VPS37CA5D8V6 355 aaPredicted RBP12.32□□□□□ -0.44
CLN3-248ENST00000636355 H3BQV1 296 aa12.32□□□□□ -0.44
CLN3-248ENST00000636355 PLCD1P51178 756 aa12.32□□□□□ -0.44
CLN3-248ENST00000636355 CCT2P78371 535 aaKnown RBP12.32□□□□□ -0.44
CLN3-248ENST00000636355 TROAPQ12815 778 aa12.32□□□□□ -0.44
CLN3-248ENST00000636355 NBR1Q14596 966 aa12.32□□□□□ -0.44
CLN3-248ENST00000636355 NTRK3Q16288 839 aa12.32□□□□□ -0.44
CLN3-248ENST00000636355 CFAP100Q494V2 611 aa12.32□□□□□ -0.44
CLN3-248ENST00000636355 METTL16Q86W50 562 aaKnown RBP12.32□□□□□ -0.44
CLN3-248ENST00000636355 FANCBQ8NB91 859 aa12.32□□□□□ -0.44
CLN3-248ENST00000636355 NEDD1Q8NHV4 660 aa12.32□□□□□ -0.44
CLN3-248ENST00000636355 NKX2-3Q8TAU0 364 aa12.32□□□□□ -0.44
CLN3-248ENST00000636355 MXD3Q9BW11 206 aa12.32□□□□□ -0.44
CLN3-248ENST00000636355 RNF26Q9BY78 433 aaPredicted RBP12.32□□□□□ -0.44
CLN3-248ENST00000636355 DDX4Q9NQI0 724 aaKnown RBP12.32□□□□□ -0.44
CLN3-248ENST00000636355 KCNQ5Q9NR82 932 aa12.32□□□□□ -0.44
CLN3-248ENST00000636355 ORC3Q9UBD5 711 aaPredicted RBP12.32□□□□□ -0.44
CLN3-248ENST00000636355 BCS1LQ9Y276 419 aa12.32□□□□□ -0.44
CLN3-248ENST00000636355 FZD9O00144 591 aa12.31□□□□□ -0.44
CLN3-248ENST00000636355 MYO1BO43795 1136 aa12.31□□□□□ -0.44
CLN3-248ENST00000636355 PRDM1O75626 825 aa12.31□□□□□ -0.44
CLN3-248ENST00000636355 FMNL1O95466 1100 aaPredicted RBP12.31□□□□□ -0.44
CLN3-248ENST00000636355 RBM5P52756 815 aaKnown RBP eCLIP12.31□□□□□ -0.44
CLN3-248ENST00000636355 ZNF280AP59817 542 aaPredicted RBP12.31□□□□□ -0.44
CLN3-248ENST00000636355 CXCL9Q07325 125 aa12.31□□□□□ -0.44
CLN3-248ENST00000636355 PICALMQ13492 652 aa12.31□□□□□ -0.44
CLN3-248ENST00000636355 SPDYE2Q495Y8 402 aa12.31□□□□□ -0.44
CLN3-248ENST00000636355 RCSD1Q6JBY9 416 aa12.31□□□□□ -0.44
CLN3-248ENST00000636355 CDC37L1Q7L3B6 337 aa12.31□□□□□ -0.44
CLN3-248ENST00000636355 CTCFLQ8NI51 663 aaPredicted RBP12.31□□□□□ -0.44
CLN3-248ENST00000636355 DPF2Q92785 391 aa12.31□□□□□ -0.44
CLN3-248ENST00000636355 ZBED3Q96IU2 234 aaPredicted RBP12.31□□□□□ -0.44
CLN3-248ENST00000636355 KAT14Q9H8E8 782 aa12.31□□□□□ -0.44
CLN3-248ENST00000636355 INCENPQ9NQS7 918 aa12.31□□□□□ -0.44
CLN3-248ENST00000636355 PI4KBQ9UBF8 816 aa12.31□□□□□ -0.44
CLN3-248ENST00000636355 SAP30BPQ9UHR5 308 aaKnown RBP12.31□□□□□ -0.44
CLN3-248ENST00000636355 SYNPO2Q9UMS6 1093 aa12.31□□□□□ -0.44
CLN3-248ENST00000636355 ELP1O95163 1332 aa12.31□□□□□ -0.44
CLN3-248ENST00000636355 RAD17O75943 681 aa12.3□□□□□ -0.44
CLN3-248ENST00000636355 DEXIO95424 95 aa12.3□□□□□ -0.44
CLN3-248ENST00000636355 MBD3O95983 291 aa12.3□□□□□ -0.44
CLN3-248ENST00000636355 FDPSP14324 419 aaKnown RBP12.3□□□□□ -0.44
CLN3-248ENST00000636355 GNAQP50148 359 aa12.3□□□□□ -0.44
CLN3-248ENST00000636355 TFAP4Q01664 338 aa12.3□□□□□ -0.44
CLN3-248ENST00000636355 DLGAP5Q15398 846 aa12.3□□□□□ -0.44
CLN3-248ENST00000636355 BRAPQ7Z569 592 aa12.3□□□□□ -0.44
CLN3-248ENST00000636355 FAM83AQ86UY5 434 aa12.3□□□□□ -0.44
CLN3-248ENST00000636355 FBXO18Q8NFZ0 1043 aa12.3□□□□□ -0.44
CLN3-248ENST00000636355 C8orf76Q96K31 380 aa12.3□□□□□ -0.44
CLN3-248ENST00000636355 ZKSCAN3Q9BRR0 538 aa12.3□□□□□ -0.44
CLN3-248ENST00000636355 SENP2Q9HC62 589 aa12.3□□□□□ -0.44
CLN3-248ENST00000636355 FAM217BQ9NTX9 383 aaPredicted RBP12.3□□□□□ -0.44
CLN3-248ENST00000636355 FAM198AQ9UFP1 575 aa12.3□□□□□ -0.44
CLN3-248ENST00000636355 HERC5Q9UII4 1024 aaKnown RBP12.3□□□□□ -0.44
CLN3-248ENST00000636355 SMIM22K7EJ46 135 aa12.29□□□□□ -0.44
CLN3-248ENST00000636355 TOP1P11387 765 aaKnown RBP12.29□□□□□ -0.44
CLN3-248ENST00000636355 XBP1P17861 261 aa12.29□□□□□ -0.44
CLN3-248ENST00000636355 CDC27P30260 824 aa12.29□□□□□ -0.44
CLN3-248ENST00000636355 EIF6P56537 245 aaKnown RBP12.29□□□□□ -0.44
CLN3-248ENST00000636355 KRT85P78386 507 aa12.29□□□□□ -0.44
CLN3-248ENST00000636355 SSRP1Q08945 709 aaKnown RBP12.29□□□□□ -0.44
CLN3-248ENST00000636355 TNFAIP1Q13829 316 aa12.29□□□□□ -0.44
CLN3-248ENST00000636355 KLHL40Q2TBA0 621 aa12.29□□□□□ -0.44
CLN3-248ENST00000636355 TMTC3Q6ZXV5 915 aa12.29□□□□□ -0.44
CLN3-248ENST00000636355 FOXP4Q8IVH2 680 aaPredicted RBP12.29□□□□□ -0.44
CLN3-248ENST00000636355 KLHL34Q8N239 644 aa12.29□□□□□ -0.44
CLN3-248ENST00000636355 PNMA1Q8ND90 353 aa12.29□□□□□ -0.44
CLN3-248ENST00000636355 NLGN2Q8NFZ4 835 aa12.29□□□□□ -0.44
CLN3-248ENST00000636355 DDX11Q96FC9 970 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms