RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 IRX3P78415 501 aaPredicted RBP19.73■□□□□ 0.75
CLN3-246ENST00000636228 TRIM32Q13049 653 aa19.73■□□□□ 0.75
CLN3-246ENST00000636228 MAGEB6Q8N7X4 407 aa19.73■□□□□ 0.75
CLN3-246ENST00000636228 HTATIP2Q9BUP3 242 aa19.73■□□□□ 0.75
CLN3-246ENST00000636228 TMOD4Q9NZQ9 345 aa19.73■□□□□ 0.75
CLN3-246ENST00000636228 GJD2Q9UKL4 321 aa19.73■□□□□ 0.75
CLN3-246ENST00000636228 AACSQ86V21 672 aa19.72■□□□□ 0.75
CLN3-246ENST00000636228 TXNRD2Q9NNW7 524 aa19.72■□□□□ 0.75
CLN3-246ENST00000636228 PAK6Q9NQU5 681 aaPredicted RBP19.72■□□□□ 0.75
CLN3-246ENST00000636228 RBM27Q9P2N5 1060 aaKnown RBP19.72■□□□□ 0.75
CLN3-246ENST00000636228 ZBTB21Q9ULJ3 1066 aa19.72■□□□□ 0.75
CLN3-246ENST00000636228 PTPRFP10586 1907 aa19.72■□□□□ 0.75
CLN3-246ENST00000636228 USP17L10C9JJH3 530 aa19.71■□□□□ 0.75
CLN3-246ENST00000636228 HLA-DOAP06340 250 aa19.71■□□□□ 0.75
CLN3-246ENST00000636228 USP5P45974 858 aa19.71■□□□□ 0.75
CLN3-246ENST00000636228 BCL11AQ9H165 835 aa19.71■□□□□ 0.75
CLN3-246ENST00000636228 IL1RAPL2Q9NP60 686 aa19.71■□□□□ 0.75
CLN3-246ENST00000636228 EMILIN3Q9NT22 766 aa19.71■□□□□ 0.75
CLN3-246ENST00000636228 GH2P01242 217 aa19.7■□□□□ 0.74
CLN3-246ENST00000636228 CYP2B6P20813 491 aa19.7■□□□□ 0.74
CLN3-246ENST00000636228 HOXA7P31268 230 aaPredicted RBP19.7■□□□□ 0.74
CLN3-246ENST00000636228 ZYXQ15942 572 aaKnown RBP19.7■□□□□ 0.74
CLN3-246ENST00000636228 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.7■□□□□ 0.74
CLN3-246ENST00000636228 MORF4L1Q9UBU8 362 aa19.7■□□□□ 0.74
CLN3-246ENST00000636228 MGAMO43451 1857 aa19.7■□□□□ 0.74
CLN3-246ENST00000636228 SIPA1L1O43166 1804 aa19.69■□□□□ 0.74
CLN3-246ENST00000636228 C19orf81C9J6K1 198 aa19.69■□□□□ 0.74
CLN3-246ENST00000636228 APBB1O00213 710 aa19.69■□□□□ 0.74
CLN3-246ENST00000636228 HERVK_113P62684 666 aa19.69■□□□□ 0.74
CLN3-246ENST00000636228 Q3C1V9 767 aa19.69■□□□□ 0.74
CLN3-246ENST00000636228 DIS3LQ8TF46 1054 aaKnown RBP19.69■□□□□ 0.74
CLN3-246ENST00000636228 PAWRQ96IZ0 340 aaKnown RBP19.69■□□□□ 0.74
CLN3-246ENST00000636228 RBPJLQ9UBG7 517 aa19.69■□□□□ 0.74
CLN3-246ENST00000636228 HMGCRP04035 888 aa19.68■□□□□ 0.74
CLN3-246ENST00000636228 POTEEQ6S8J3 1075 aa19.68■□□□□ 0.74
CLN3-246ENST00000636228 GPRC5AQ8NFJ5 357 aa19.68■□□□□ 0.74
CLN3-246ENST00000636228 PAGR1Q9BTK6 254 aa19.68■□□□□ 0.74
CLN3-246ENST00000636228 CRISPLD2Q9H0B8 497 aa19.68■□□□□ 0.74
CLN3-246ENST00000636228 NR2E3Q9Y5X4 410 aa19.68■□□□□ 0.74
CLN3-246ENST00000636228 LOC285556D6RIA3 1793 aa19.67■□□□□ 0.74
CLN3-246ENST00000636228 EVI5O60447 810 aa19.67■□□□□ 0.74
CLN3-246ENST00000636228 MAP3K12Q12852 859 aa19.67■□□□□ 0.74
CLN3-246ENST00000636228 DIEXFQ68CQ4 756 aaKnown RBP19.67■□□□□ 0.74
CLN3-246ENST00000636228 TATDN1Q6P1N9 297 aa19.67■□□□□ 0.74
CLN3-246ENST00000636228 ERC1Q8IUD2 1116 aa19.67■□□□□ 0.74
CLN3-246ENST00000636228 TRIB2Q92519 343 aa19.67■□□□□ 0.74
CLN3-246ENST00000636228 GINM1Q9NU53 330 aa19.67■□□□□ 0.74
CLN3-246ENST00000636228 MAST2Q6P0Q8 1798 aa19.66■□□□□ 0.74
CLN3-246ENST00000636228 IGSF3O75054 1194 aa19.66■□□□□ 0.74
CLN3-246ENST00000636228 PLCD1P51178 756 aa19.66■□□□□ 0.74
CLN3-246ENST00000636228 EVX2Q03828 476 aa19.66■□□□□ 0.74
CLN3-246ENST00000636228 RAB3GAP1Q15042 981 aa19.66■□□□□ 0.74
CLN3-246ENST00000636228 USP17L2Q6R6M4 530 aa19.66■□□□□ 0.74
CLN3-246ENST00000636228 RHPN1Q8TCX5 695 aa19.66■□□□□ 0.74
CLN3-246ENST00000636228 PORCNQ9H237 461 aa19.66■□□□□ 0.74
CLN3-246ENST00000636228 HMX1Q9NP08 348 aaPredicted RBP19.66■□□□□ 0.74
CLN3-246ENST00000636228 ATAD5Q96QE3 1844 aa19.65■□□□□ 0.74
CLN3-246ENST00000636228 ACER1Q8TDN7 264 aa19.65■□□□□ 0.74
CLN3-246ENST00000636228 FEZ1Q99689 392 aa19.65■□□□□ 0.74
CLN3-246ENST00000636228 SERPINB13Q9UIV8 391 aa19.65■□□□□ 0.74
CLN3-246ENST00000636228 RPTORQ8N122 1335 aa19.65■□□□□ 0.74
CLN3-246ENST00000636228 ERVK-9P63128 1117 aa19.64■□□□□ 0.73
CLN3-246ENST00000636228 ERVK-24P63145 666 aa19.64■□□□□ 0.73
CLN3-246ENST00000636228 CERKLQ49MI3 558 aaPredicted RBP19.64■□□□□ 0.73
CLN3-246ENST00000636228 NECAB2Q7Z6G3 386 aa19.64■□□□□ 0.73
CLN3-246ENST00000636228 TTC6Q86TZ1 520 aa19.64■□□□□ 0.73
CLN3-246ENST00000636228 NUDT12Q9BQG2 462 aa19.64■□□□□ 0.73
CLN3-246ENST00000636228 RIOK1Q9BRS2 568 aaKnown RBP19.64■□□□□ 0.73
CLN3-246ENST00000636228 PRO3102Q9H379 93 aa19.64■□□□□ 0.73
CLN3-246ENST00000636228 MYO5AQ9Y4I1 1855 aaKnown RBP19.63■□□□□ 0.73
CLN3-246ENST00000636228 ZBED9Q6R2W3 1325 aa19.63■□□□□ 0.73
CLN3-246ENST00000636228 MAGEB6P1A0A0J9YX57 407 aa19.63■□□□□ 0.73
CLN3-246ENST00000636228 CCL14Q16627 93 aa19.63■□□□□ 0.73
CLN3-246ENST00000636228 ABCB5Q2M3G0 1257 aa19.63■□□□□ 0.73
CLN3-246ENST00000636228 SLC9C2Q5TAH2 1124 aa19.63■□□□□ 0.73
CLN3-246ENST00000636228 CCAR1Q8IX12 1150 aaKnown RBP19.63■□□□□ 0.73
CLN3-246ENST00000636228 EDC3Q96F86 508 aaKnown RBP19.63■□□□□ 0.73
CLN3-246ENST00000636228 EHD4Q9H223 541 aa19.63■□□□□ 0.73
CLN3-246ENST00000636228 STAP2Q9UGK3 403 aa19.63■□□□□ 0.73
CLN3-246ENST00000636228 COG6Q9Y2V7 657 aa19.63■□□□□ 0.73
CLN3-246ENST00000636228 GOLIM4O00461 696 aa19.62■□□□□ 0.73
CLN3-246ENST00000636228 CNMDO75829 334 aa19.62■□□□□ 0.73
CLN3-246ENST00000636228 POLR3DP05423 398 aaPredicted RBP19.62■□□□□ 0.73
CLN3-246ENST00000636228 PRKAR2AP13861 404 aaKnown RBP19.62■□□□□ 0.73
CLN3-246ENST00000636228 MAPK4P31152 587 aa19.62■□□□□ 0.73
CLN3-246ENST00000636228 SHMT1P34896 483 aa19.62■□□□□ 0.73
CLN3-246ENST00000636228 GPR142Q7Z601 462 aa19.62■□□□□ 0.73
CLN3-246ENST00000636228 CERS3Q8IU89 383 aa19.62■□□□□ 0.73
CLN3-246ENST00000636228 SIRT2Q8IXJ6 389 aa19.62■□□□□ 0.73
CLN3-246ENST00000636228 DNAJC2Q99543 621 aaKnown RBP19.62■□□□□ 0.73
CLN3-246ENST00000636228 USP17L15C9J2P7 530 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 USP17L13C9JLJ4 530 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 USP17L11C9JVI0 530 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 USP17L18D6R9N7 530 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 USP17L22D6RA61 530 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 USP17L17D6RBQ6 530 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 USP17L19D6RCP7 530 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 USP17L20D6RJB6 530 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 PDE6AP16499 860 aa19.61■□□□□ 0.73
CLN3-246ENST00000636228 GUCY1A2P33402 732 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms