RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 BRF1Q92994 677 aa16.61■□□□□ 0.25
CLN3-242ENST00000635958 HACL1Q9UJ83 578 aa16.61■□□□□ 0.25
CLN3-242ENST00000635958 TPCN1Q9ULQ1 816 aa16.61■□□□□ 0.25
CLN3-242ENST00000635958 ANGEL1Q9UNK9 670 aaKnown RBP16.61■□□□□ 0.25
CLN3-242ENST00000635958 SH2B2O14492 632 aaPredicted RBP16.61■□□□□ 0.25
CLN3-242ENST00000635958 ZSCAN29Q8IWY8 852 aaPredicted RBP16.61■□□□□ 0.25
CLN3-242ENST00000635958 SH2B1Q9NRF2 756 aaPredicted RBP16.61■□□□□ 0.25
CLN3-242ENST00000635958 TCP11L1Q9NUJ3 509 aa16.61■□□□□ 0.25
CLN3-242ENST00000635958 SIPA1L1O43166 1804 aa16.6■□□□□ 0.25
CLN3-242ENST00000635958 FGD1P98174 961 aa16.6■□□□□ 0.25
CLN3-242ENST00000635958 MAP3K10Q02779 954 aa16.6■□□□□ 0.25
CLN3-242ENST00000635958 SART3Q15020 963 aaKnown RBP16.6■□□□□ 0.25
CLN3-242ENST00000635958 SEC23AQ15436 765 aa16.6■□□□□ 0.25
CLN3-242ENST00000635958 SGMS1Q86VZ5 419 aa16.6■□□□□ 0.25
CLN3-242ENST00000635958 IQCA1Q86XH1 822 aa16.6■□□□□ 0.25
CLN3-242ENST00000635958 TMTC2Q8N394 836 aa16.6■□□□□ 0.25
CLN3-242ENST00000635958 ZNF274Q96GC6 653 aaPredicted RBP16.6■□□□□ 0.25
CLN3-242ENST00000635958 GPHNQ9NQX3 736 aaPredicted RBP16.6■□□□□ 0.25
CLN3-242ENST00000635958 ASTN2O75129 1339 aaPredicted RBP16.6■□□□□ 0.25
CLN3-242ENST00000635958 IFIT3O14879 490 aaKnown RBP16.59■□□□□ 0.25
CLN3-242ENST00000635958 TBC1D12O60347 775 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 SHMT1P34896 483 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 TFAP4Q01664 338 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 RASA3Q14644 834 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 ME3Q16798 604 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 TATDN1Q6P1N9 297 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 CSRNP1Q96S65 589 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 ZSCAN10Q96SZ4 725 aaPredicted RBP16.59■□□□□ 0.25
CLN3-242ENST00000635958 LARP6Q9BRS8 491 aaKnown RBP16.59■□□□□ 0.25
CLN3-242ENST00000635958 TMEM39BQ9GZU3 492 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 DNAJC18Q9H819 358 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 LY9Q9HBG7 655 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 HERC5Q9UII4 1024 aaKnown RBP16.59■□□□□ 0.25
CLN3-242ENST00000635958 TSPY2A6NKD2 308 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 CCDC178Q5BJE1 867 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 TMEM67Q5HYA8 995 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 FAM47AQ5JRC9 791 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 APOBEC3FQ8IUX4 373 aaKnown RBP16.59■□□□□ 0.25
CLN3-242ENST00000635958 NEDD1Q8NHV4 660 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 ANKS1AQ92625 1134 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 CCDC17Q96LX7 622 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 TEPSINQ96N21 525 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 UBAC1Q9BSL1 405 aa16.59■□□□□ 0.25
CLN3-242ENST00000635958 PITPNM2Q9BZ72 1349 aa16.58■□□□□ 0.25
CLN3-242ENST00000635958 APOBRQ0VD83 1088 aa16.58■□□□□ 0.24
CLN3-242ENST00000635958 USP50Q70EL3 339 aaPredicted RBP16.58■□□□□ 0.24
CLN3-242ENST00000635958 NOL8Q76FK4 1167 aaKnown RBP16.58■□□□□ 0.24
CLN3-242ENST00000635958 INTS4Q96HW7 963 aaKnown RBP16.58■□□□□ 0.24
CLN3-242ENST00000635958 DEFB129Q9H1M3 183 aa16.58■□□□□ 0.24
CLN3-242ENST00000635958 ERICH2A1L162 156 aa16.57■□□□□ 0.24
CLN3-242ENST00000635958 LARGE1O95461 756 aa16.57■□□□□ 0.24
CLN3-242ENST00000635958 NOVP48745 357 aa16.57■□□□□ 0.24
CLN3-242ENST00000635958 ANGEL2Q5VTE6 544 aaKnown RBP16.57■□□□□ 0.24
CLN3-242ENST00000635958 CRACR2BQ8N4Y2 399 aaPredicted RBP16.57■□□□□ 0.24
CLN3-242ENST00000635958 ENAHQ8N8S7 591 aaPredicted RBP16.57■□□□□ 0.24
CLN3-242ENST00000635958 ZKSCAN3Q9BRR0 538 aa16.57■□□□□ 0.24
CLN3-242ENST00000635958 IL17RBQ9NRM6 502 aa16.57■□□□□ 0.24
CLN3-242ENST00000635958 TNKSO95271 1327 aa16.57■□□□□ 0.24
CLN3-242ENST00000635958 PLIN4Q96Q06 1357 aa16.57■□□□□ 0.24
CLN3-242ENST00000635958 SCN4AP35499 1836 aa16.57■□□□□ 0.24
CLN3-242ENST00000635958 IQCA1LA6NCM1 817 aa16.56■□□□□ 0.24
CLN3-242ENST00000635958 POTECB2RU33 542 aa16.56■□□□□ 0.24
CLN3-242ENST00000635958 PFKFB2O60825 505 aa16.56■□□□□ 0.24
CLN3-242ENST00000635958 TSPY3P0CV98 308 aa16.56■□□□□ 0.24
CLN3-242ENST00000635958 TSPY8P0CW00 308 aa16.56■□□□□ 0.24
CLN3-242ENST00000635958 PDIA3P30101 505 aaKnown RBP16.56■□□□□ 0.24
CLN3-242ENST00000635958 WTAPQ15007 396 aa16.56■□□□□ 0.24
CLN3-242ENST00000635958 CLEC17AQ6ZS10 378 aa16.56■□□□□ 0.24
CLN3-242ENST00000635958 DGKHQ86XP1 1220 aa16.56■□□□□ 0.24
CLN3-242ENST00000635958 ZC3H15Q8WU90 426 aaKnown RBP16.56■□□□□ 0.24
CLN3-242ENST00000635958 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.56■□□□□ 0.24
CLN3-242ENST00000635958 SENP2Q9HC62 589 aa16.56■□□□□ 0.24
CLN3-242ENST00000635958 PPP2R3BQ9Y5P8 575 aa16.56■□□□□ 0.24
CLN3-242ENST00000635958 WDR90Q96KV7 1748 aa16.56■□□□□ 0.24
CLN3-242ENST00000635958 EPHX2P34913 555 aa16.56■□□□□ 0.24
CLN3-242ENST00000635958 RAB3GAP1Q15042 981 aa16.56■□□□□ 0.24
CLN3-242ENST00000635958 RCSD1Q6JBY9 416 aa16.56■□□□□ 0.24
CLN3-242ENST00000635958 GGA3Q9NZ52 723 aa16.56■□□□□ 0.24
CLN3-242ENST00000635958 IGKV6D-41A0A0C4DH26 115 aa16.55■□□□□ 0.24
CLN3-242ENST00000635958 GOLGA6L22H0YM25 854 aa16.55■□□□□ 0.24
CLN3-242ENST00000635958 SLURP2P0DP57 97 aa16.55■□□□□ 0.24
CLN3-242ENST00000635958 XRCC6P12956 609 aaKnown RBP eCLIP16.55■□□□□ 0.24
CLN3-242ENST00000635958 RCAN1P53805 252 aa16.55■□□□□ 0.24
CLN3-242ENST00000635958 CDAN1Q8IWY9 1227 aa16.55■□□□□ 0.24
CLN3-242ENST00000635958 TRIM34Q9BYJ4 488 aa16.55■□□□□ 0.24
CLN3-242ENST00000635958 TAF1DQ9H5J8 278 aaPredicted RBP16.55■□□□□ 0.24
CLN3-242ENST00000635958 KLF18A0A0U1RQI7 1052 aa16.54■□□□□ 0.24
CLN3-242ENST00000635958 NMT2O60551 498 aa16.54■□□□□ 0.24
CLN3-242ENST00000635958 AKR1B1P15121 316 aa16.54■□□□□ 0.24
CLN3-242ENST00000635958 ST3GAL1Q11201 340 aa16.54■□□□□ 0.24
CLN3-242ENST00000635958 CERKLQ49MI3 558 aaPredicted RBP16.54■□□□□ 0.24
CLN3-242ENST00000635958 APOA5Q6Q788 366 aa16.54■□□□□ 0.24
CLN3-242ENST00000635958 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.54■□□□□ 0.24
CLN3-242ENST00000635958 HPS5Q9UPZ3 1129 aa16.54■□□□□ 0.24
CLN3-242ENST00000635958 MYH8P13535 1937 aa16.54■□□□□ 0.24
CLN3-242ENST00000635958 IFIT1BQ5T764 474 aaKnown RBP16.54■□□□□ 0.24
CLN3-242ENST00000635958 GTF3C6Q969F1 213 aa16.54■□□□□ 0.24
CLN3-242ENST00000635958 CHMP4CQ96CF2 233 aa16.54■□□□□ 0.24
CLN3-242ENST00000635958 POLR2AP24928 1970 aaKnown RBP16.53■□□□□ 0.24
CLN3-242ENST00000635958 CCDC69A6NI79 296 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms