RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	ECM29	Q5VYK3	1845 aa		11.24	□□□□□ -0.61
PDLIM5-223	ENST00000627587	LDHB	P07195	334 aa	Known RBP	11.23	□□□□□ -0.61
PDLIM5-223	ENST00000627587	GNAT2	P19087	354 aa		11.23	□□□□□ -0.61
PDLIM5-223	ENST00000627587	ANTXR2	P58335	489 aa		11.23	□□□□□ -0.61
PDLIM5-223	ENST00000627587	PKP1	Q13835	747 aa		11.23	□□□□□ -0.61
PDLIM5-223	ENST00000627587	DIXDC1	Q155Q3	683 aa		11.23	□□□□□ -0.61
PDLIM5-223	ENST00000627587	DHX32	Q7L7V1	743 aa	Known RBP	11.23	□□□□□ -0.61
PDLIM5-223	ENST00000627587	CERS5	Q8N5B7	392 aa		11.23	□□□□□ -0.61
PDLIM5-223	ENST00000627587	INTS4	Q96HW7	963 aa	Known RBP	11.23	□□□□□ -0.61
PDLIM5-223	ENST00000627587	LRRC2	Q9BYS8	371 aa		11.23	□□□□□ -0.61
PDLIM5-223	ENST00000627587	INCENP	Q9NQS7	918 aa		11.23	□□□□□ -0.61
PDLIM5-223	ENST00000627587	SCAF8	Q9UPN6	1271 aa	Known RBP	11.23	□□□□□ -0.61
PDLIM5-223	ENST00000627587	NEDD4	P46934	1319 aa		11.23	□□□□□ -0.61
PDLIM5-223	ENST00000627587	ZNF213	O14771	459 aa		11.23	□□□□□ -0.61
PDLIM5-223	ENST00000627587	HMGB1	P09429	215 aa	Known RBP	11.23	□□□□□ -0.61
PDLIM5-223	ENST00000627587	EVX2	Q03828	476 aa		11.23	□□□□□ -0.61
PDLIM5-223	ENST00000627587	CHST3	Q7LGC8	479 aa		11.23	□□□□□ -0.61
PDLIM5-223	ENST00000627587	AATF	Q9NY61	560 aa	Known RBP eCLIP	11.23	□□□□□ -0.61
PDLIM5-223	ENST00000627587	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.23	□□□□□ -0.61
PDLIM5-223	ENST00000627587	PDE4DIP	Q5VU43	2346 aa		11.22	□□□□□ -0.61
PDLIM5-223	ENST00000627587	DTNB	O60941	627 aa		11.22	□□□□□ -0.61
PDLIM5-223	ENST00000627587	PRKG1	Q13976	671 aa		11.22	□□□□□ -0.61
PDLIM5-223	ENST00000627587	ANKRD1	Q15327	319 aa		11.22	□□□□□ -0.61
PDLIM5-223	ENST00000627587	MFSD14B	Q5SR56	506 aa		11.22	□□□□□ -0.61
PDLIM5-223	ENST00000627587		Q6ZUG5	572 aa		11.22	□□□□□ -0.61
PDLIM5-223	ENST00000627587	DZIP1	Q86YF9	867 aa	Known RBP	11.22	□□□□□ -0.61
PDLIM5-223	ENST00000627587	FBXL16	Q8N461	479 aa		11.22	□□□□□ -0.61
PDLIM5-223	ENST00000627587	NAPB	Q9H115	298 aa		11.22	□□□□□ -0.61
PDLIM5-223	ENST00000627587	GPHN	Q9NQX3	736 aa	Predicted RBP	11.22	□□□□□ -0.61
PDLIM5-223	ENST00000627587	MYH1	P12882	1939 aa		11.21	□□□□□ -0.61
PDLIM5-223	ENST00000627587	IREB2	P48200	963 aa	Known RBP	11.21	□□□□□ -0.61
PDLIM5-223	ENST00000627587	CTDSPL2	Q05D32	466 aa		11.21	□□□□□ -0.61
PDLIM5-223	ENST00000627587	MKRN3	Q13064	507 aa	Known RBP	11.21	□□□□□ -0.61
PDLIM5-223	ENST00000627587	RAB3GAP1	Q15042	981 aa		11.21	□□□□□ -0.61
PDLIM5-223	ENST00000627587	IFNL1	Q8IU54	200 aa		11.21	□□□□□ -0.61
PDLIM5-223	ENST00000627587	NECAB1	Q8N987	351 aa		11.21	□□□□□ -0.61
PDLIM5-223	ENST00000627587	NACAP1	Q9BZK3	213 aa		11.21	□□□□□ -0.61
PDLIM5-223	ENST00000627587	ZDHHC9	Q9Y397	364 aa		11.21	□□□□□ -0.61
PDLIM5-223	ENST00000627587	MROH7-TTC4	A0A0A0MT08	1334 aa		11.21	□□□□□ -0.62
PDLIM5-223	ENST00000627587	NFKBIB	Q15653	356 aa		11.21	□□□□□ -0.62
PDLIM5-223	ENST00000627587	CFAP100	Q494V2	611 aa		11.21	□□□□□ -0.62
PDLIM5-223	ENST00000627587	CYB5R4	Q7L1T6	521 aa		11.21	□□□□□ -0.62
PDLIM5-223	ENST00000627587	TBC1D22A	Q8WUA7	517 aa		11.21	□□□□□ -0.62
PDLIM5-223	ENST00000627587	BRF1	Q92994	677 aa		11.21	□□□□□ -0.62
PDLIM5-223	ENST00000627587	ERO1A	Q96HE7	468 aa		11.21	□□□□□ -0.62
PDLIM5-223	ENST00000627587	WNK4	Q96J92	1243 aa		11.21	□□□□□ -0.62
PDLIM5-223	ENST00000627587	DCP1A	Q9NPI6	582 aa	Predicted RBP	11.21	□□□□□ -0.62
PDLIM5-223	ENST00000627587	TNRC18	O15417	2968 aa	Predicted RBP	11.21	□□□□□ -0.62
PDLIM5-223	ENST00000627587	GAK	O14976	1311 aa		11.2	□□□□□ -0.62
PDLIM5-223	ENST00000627587	CYP2D7	A0A087X1C5	515 aa		11.2	□□□□□ -0.62
PDLIM5-223	ENST00000627587	SPDYE2B	A6NHP3	402 aa		11.2	□□□□□ -0.62
PDLIM5-223	ENST00000627587	SPDYE6	P0CI01	402 aa		11.2	□□□□□ -0.62
PDLIM5-223	ENST00000627587	TDO2	P48775	406 aa		11.2	□□□□□ -0.62
PDLIM5-223	ENST00000627587	EVC	P57679	992 aa		11.2	□□□□□ -0.62
PDLIM5-223	ENST00000627587	PPP4C	P60510	307 aa		11.2	□□□□□ -0.62
PDLIM5-223	ENST00000627587	GSTO1	P78417	241 aa		11.2	□□□□□ -0.62
PDLIM5-223	ENST00000627587	TNFAIP1	Q13829	316 aa		11.2	□□□□□ -0.62
PDLIM5-223	ENST00000627587	ARHGEF6	Q15052	776 aa		11.2	□□□□□ -0.62
PDLIM5-223	ENST00000627587	SPDYE2	Q495Y8	402 aa		11.2	□□□□□ -0.62
PDLIM5-223	ENST00000627587	CCDC83	Q8IWF9	413 aa		11.2	□□□□□ -0.62
PDLIM5-223	ENST00000627587	NCOA7	Q8NI08	942 aa		11.2	□□□□□ -0.62
PDLIM5-223	ENST00000627587	FAM163A	Q96GL9	167 aa	Predicted RBP	11.2	□□□□□ -0.62
PDLIM5-223	ENST00000627587	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.2	□□□□□ -0.62
PDLIM5-223	ENST00000627587	CWC22	Q9HCG8	908 aa	Known RBP	11.2	□□□□□ -0.62
PDLIM5-223	ENST00000627587	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.2	□□□□□ -0.62
PDLIM5-223	ENST00000627587	ANAPC4	Q9UJX5	808 aa		11.2	□□□□□ -0.62
PDLIM5-223	ENST00000627587		B4E1Z4	1266 aa		11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	PPARA	Q07869	468 aa		11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	GIMAP6	Q6P9H5	292 aa		11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	CTR9	Q6PD62	1173 aa		11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	ANKRD13A	Q8IZ07	590 aa		11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	STAG1	Q8WVM7	1258 aa		11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	PRMT6	Q96LA8	375 aa	Predicted RBP	11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	TCHH	Q07283	1943 aa		11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	WDR19	Q8NEZ3	1342 aa		11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	GPR75-ASB3	A0A0A6YYF3	556 aa		11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	TESPA1	A2RU30	521 aa	Predicted RBP	11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	PRC1	O43663	620 aa		11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	RHBDL3	P58872	404 aa		11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	FGD1	P98174	961 aa		11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	APOBR	Q0VD83	1088 aa		11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	TRDN	Q13061	729 aa		11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	AKNAD1	Q5T1N1	836 aa		11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	RALYL	Q86SE5	291 aa	Known RBP	11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	TNPO1	Q92973	898 aa	Known RBP	11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	SERPINA10	Q9UK55	444 aa		11.19	□□□□□ -0.62
PDLIM5-223	ENST00000627587	USP17L12	C9JPN9	530 aa		11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	USP17L21	D6R901	530 aa		11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	USP2	O75604	605 aa	Predicted RBP	11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	LDHC	P07864	332 aa		11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	FGR	P09769	529 aa		11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	MCM5	P33992	734 aa		11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	RBM5	P52756	815 aa	Known RBP eCLIP	11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	NBR1	Q14596	966 aa		11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	GTF3C6	Q969F1	213 aa		11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	NOL10	Q9BSC4	688 aa	Known RBP	11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	CRNKL1	Q9BZJ0	848 aa	Known RBP	11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	R3HDML	Q9H3Y0	253 aa		11.18	□□□□□ -0.62
PDLIM5-223	ENST00000627587	VEZT	Q9HBM0	779 aa		11.18	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms