RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 CYP2C8P10632 490 aa15.22■□□□□ 0.03
PNKP-217ENST00000625216 BCRP11274 1271 aa15.22■□□□□ 0.03
PNKP-217ENST00000625216 CCDC84Q86UT8 332 aaPredicted RBP15.22■□□□□ 0.03
PNKP-217ENST00000625216 OSBPL3Q9H4L5 887 aa15.22■□□□□ 0.03
PNKP-217ENST00000625216 DNAJC18Q9H819 358 aa15.22■□□□□ 0.03
PNKP-217ENST00000625216 STAP2Q9UGK3 403 aa15.22■□□□□ 0.03
PNKP-217ENST00000625216 SERPINB13Q9UIV8 391 aa15.22■□□□□ 0.03
PNKP-217ENST00000625216 PNMA3Q9UL41 463 aa15.22■□□□□ 0.03
PNKP-217ENST00000625216 TAOK2Q9UL54 1235 aa15.22■□□□□ 0.03
PNKP-217ENST00000625216 C19orf81C9J6K1 198 aa15.21■□□□□ 0.03
PNKP-217ENST00000625216 PSMC4P43686 418 aa15.21■□□□□ 0.03
PNKP-217ENST00000625216 C8orf34Q49A92 452 aa15.21■□□□□ 0.03
PNKP-217ENST00000625216 ZSCAN25Q6NSZ9 544 aa15.21■□□□□ 0.03
PNKP-217ENST00000625216 TATDN1Q6P1N9 297 aa15.21■□□□□ 0.03
PNKP-217ENST00000625216 SMCR8Q8TEV9 937 aaPredicted RBP15.21■□□□□ 0.03
PNKP-217ENST00000625216 GPATCH3Q96I76 525 aa15.21■□□□□ 0.03
PNKP-217ENST00000625216 ECHDC1Q9NTX5 307 aa15.21■□□□□ 0.03
PNKP-217ENST00000625216 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.21■□□□□ 0.03
PNKP-217ENST00000625216 FMNL1O95466 1100 aaPredicted RBP15.2■□□□□ 0.02
PNKP-217ENST00000625216 OSBPP22059 807 aa15.2■□□□□ 0.02
PNKP-217ENST00000625216 ADD2P35612 726 aa15.2■□□□□ 0.02
PNKP-217ENST00000625216 BACE1P56817 501 aa15.2■□□□□ 0.02
PNKP-217ENST00000625216 UBE3CQ15386 1083 aa15.2■□□□□ 0.02
PNKP-217ENST00000625216 SLC9C1Q4G0N8 1177 aa15.2■□□□□ 0.02
PNKP-217ENST00000625216 BMP2KLQ5H9B9 411 aa15.2■□□□□ 0.02
PNKP-217ENST00000625216 EDC3Q96F86 508 aaKnown RBP15.2■□□□□ 0.02
PNKP-217ENST00000625216 ARHGAP39Q9C0H5 1083 aa15.2■□□□□ 0.02
PNKP-217ENST00000625216 SRRDQ9UH36 339 aa15.2■□□□□ 0.02
PNKP-217ENST00000625216 ZBTB21Q9ULJ3 1066 aa15.2■□□□□ 0.02
PNKP-217ENST00000625216 PTCH2Q9Y6C5 1203 aa15.2■□□□□ 0.02
PNKP-217ENST00000625216 USP17L10C9JJH3 530 aa15.19■□□□□ 0.02
PNKP-217ENST00000625216 POLR3DP05423 398 aaPredicted RBP15.19■□□□□ 0.02
PNKP-217ENST00000625216 GCLCP48506 637 aaPredicted RBP15.19■□□□□ 0.02
PNKP-217ENST00000625216 HMGCS2P54868 508 aa15.19■□□□□ 0.02
PNKP-217ENST00000625216 FCGRTP55899 365 aa15.19■□□□□ 0.02
PNKP-217ENST00000625216 PI4K2BQ8TCG2 481 aa15.19■□□□□ 0.02
PNKP-217ENST00000625216 TRIM47Q96LD4 638 aa15.19■□□□□ 0.02
PNKP-217ENST00000625216 TSHZ2Q9NRE2 1034 aa15.19■□□□□ 0.02
PNKP-217ENST00000625216 TMOD4Q9NZQ9 345 aa15.19■□□□□ 0.02
PNKP-217ENST00000625216 GDF11O95390 407 aa15.18■□□□□ 0.02
PNKP-217ENST00000625216 HOXA7P31268 230 aaPredicted RBP15.18■□□□□ 0.02
PNKP-217ENST00000625216 PLCD1P51178 756 aa15.18■□□□□ 0.02
PNKP-217ENST00000625216 JAG1P78504 1218 aa15.18■□□□□ 0.02
PNKP-217ENST00000625216 CERKLQ49MI3 558 aaPredicted RBP15.18■□□□□ 0.02
PNKP-217ENST00000625216 TREML2Q5T2D2 321 aa15.18■□□□□ 0.02
PNKP-217ENST00000625216 ZNF333Q96JL9 665 aa15.18■□□□□ 0.02
PNKP-217ENST00000625216 TMEM106CQ9BVX2 250 aa15.18■□□□□ 0.02
PNKP-217ENST00000625216 BACH2Q9BYV9 841 aa15.18■□□□□ 0.02
PNKP-217ENST00000625216 CABP5Q9NP86 173 aa15.18■□□□□ 0.02
PNKP-217ENST00000625216 DCP1AQ9NPI6 582 aaPredicted RBP15.18■□□□□ 0.02
PNKP-217ENST00000625216 ATP8A2Q9NTI2 1148 aa15.18■□□□□ 0.02
PNKP-217ENST00000625216 MCM9Q9NXL9 1143 aa15.18■□□□□ 0.02
PNKP-217ENST00000625216 HTTP42858 3142 aa15.18■□□□□ 0.02
PNKP-217ENST00000625216 TTC41PQ6P2S7 1318 aa15.17■□□□□ 0.02
PNKP-217ENST00000625216 DOCK1Q14185 1865 aa15.17■□□□□ 0.02
PNKP-217ENST00000625216 GH2P01242 217 aa15.17■□□□□ 0.02
PNKP-217ENST00000625216 CTGFP29279 349 aa15.17■□□□□ 0.02
PNKP-217ENST00000625216 GABPAQ06546 454 aa15.17■□□□□ 0.02
PNKP-217ENST00000625216 MTMR2Q13614 643 aa15.17■□□□□ 0.02
PNKP-217ENST00000625216 FAM110CQ1W6H9 321 aa15.17■□□□□ 0.02
PNKP-217ENST00000625216 SLC4A8Q2Y0W8 1093 aa15.17■□□□□ 0.02
PNKP-217ENST00000625216 LCORLQ8N3X6 602 aa15.17■□□□□ 0.02
PNKP-217ENST00000625216 ARMT1Q9H993 441 aa15.17■□□□□ 0.02
PNKP-217ENST00000625216 MBD4O95243 580 aa15.16■□□□□ 0.02
PNKP-217ENST00000625216 ABCB5Q2M3G0 1257 aa15.16■□□□□ 0.02
PNKP-217ENST00000625216 USP17L2Q6R6M4 530 aa15.16■□□□□ 0.02
PNKP-217ENST00000625216 RAET1EQ8TD07 263 aa15.16■□□□□ 0.02
PNKP-217ENST00000625216 SDR42E1Q8WUS8 393 aa15.16■□□□□ 0.02
PNKP-217ENST00000625216 DDRGK1Q96HY6 314 aa15.16■□□□□ 0.02
PNKP-217ENST00000625216 ASCC2Q9H1I8 757 aaPredicted RBP15.16■□□□□ 0.02
PNKP-217ENST00000625216 MYPNQ86TC9 1320 aa15.16■□□□□ 0.02
PNKP-217ENST00000625216 ERC2O15083 957 aa15.15■□□□□ 0.02
PNKP-217ENST00000625216 SDSP20132 328 aa15.15■□□□□ 0.02
PNKP-217ENST00000625216 SHMT1P34896 483 aa15.15■□□□□ 0.02
PNKP-217ENST00000625216 USP14P54578 494 aa15.15■□□□□ 0.02
PNKP-217ENST00000625216 IRX3P78415 501 aaPredicted RBP15.15■□□□□ 0.02
PNKP-217ENST00000625216 LRRFIP1Q32MZ4 808 aaKnown RBP15.15■□□□□ 0.02
PNKP-217ENST00000625216 AMOTL1Q8IY63 956 aa15.15■□□□□ 0.02
PNKP-217ENST00000625216 KBTBD3Q8NAB2 608 aa15.15■□□□□ 0.02
PNKP-217ENST00000625216 SWAP70Q9UH65 585 aa15.15■□□□□ 0.02
PNKP-217ENST00000625216 MYH7P12883 1935 aa15.15■□□□□ 0.02
PNKP-217ENST00000625216 MYO5AQ9Y4I1 1855 aaKnown RBP15.14■□□□□ 0.01
PNKP-217ENST00000625216 ZFYP08048 801 aaPredicted RBP15.14■□□□□ 0.01
PNKP-217ENST00000625216 GRK4P32298 578 aa15.14■□□□□ 0.01
PNKP-217ENST00000625216 SHROOM1Q2M3G4 852 aaPredicted RBP15.14■□□□□ 0.01
PNKP-217ENST00000625216 ANKRD13CQ8N6S4 541 aa15.14■□□□□ 0.01
PNKP-217ENST00000625216 GTF3C2Q8WUA4 911 aaPredicted RBP15.14■□□□□ 0.01
PNKP-217ENST00000625216 COA7Q96BR5 231 aa15.14■□□□□ 0.01
PNKP-217ENST00000625216 C12orf42Q96LP6 360 aa15.14■□□□□ 0.01
PNKP-217ENST00000625216 POTEFA5A3E0 1075 aa15.13■□□□□ 0.01
PNKP-217ENST00000625216 TNPO2O14787 897 aaKnown RBP15.13■□□□□ 0.01
PNKP-217ENST00000625216 PRKAB2O43741 272 aa15.13■□□□□ 0.01
PNKP-217ENST00000625216 GLRX3O76003 335 aaKnown RBP15.13■□□□□ 0.01
PNKP-217ENST00000625216 ECM2O94769 699 aaPredicted RBP15.13■□□□□ 0.01
PNKP-217ENST00000625216 PRKCZQ05513 592 aa15.13■□□□□ 0.01
PNKP-217ENST00000625216 IRF5Q13568 498 aa15.13■□□□□ 0.01
PNKP-217ENST00000625216 RAB3GAP1Q15042 981 aa15.13■□□□□ 0.01
PNKP-217ENST00000625216 SLAIN1Q8ND83 568 aa15.13■□□□□ 0.01
PNKP-217ENST00000625216 SH3TC2Q8TF17 1288 aa15.13■□□□□ 0.01
PNKP-217ENST00000625216 KIAA1683Q9H0B3 1180 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms