RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 ACRBPQ8NEB7 543 aa16.03■□□□□ 0.16
LDB3-209ENST00000623056 ACBD3Q9H3P7 528 aa16.03■□□□□ 0.16
LDB3-209ENST00000623056 TTF2Q9UNY4 1162 aaKnown RBP16.03■□□□□ 0.16
LDB3-209ENST00000623056 SCN11AQ9UI33 1791 aa16.03■□□□□ 0.16
LDB3-209ENST00000623056 ACTN4O43707 911 aaKnown RBP16.03■□□□□ 0.16
LDB3-209ENST00000623056 CIAO1O76071 339 aa16.03■□□□□ 0.16
LDB3-209ENST00000623056 TUBBP07437 444 aa16.03■□□□□ 0.16
LDB3-209ENST00000623056 CASP14P31944 242 aa16.03■□□□□ 0.16
LDB3-209ENST00000623056 SCARF1Q14162 830 aa16.03■□□□□ 0.16
LDB3-209ENST00000623056 YY1AP1Q9H869 796 aa16.03■□□□□ 0.16
LDB3-209ENST00000623056 ZBTB43O43298 467 aa16.02■□□□□ 0.16
LDB3-209ENST00000623056 SPATA1Q5VX52 437 aa16.02■□□□□ 0.16
LDB3-209ENST00000623056 TTC5Q8N0Z6 440 aa16.02■□□□□ 0.16
LDB3-209ENST00000623056 SPATA20Q8TB22 786 aa16.02■□□□□ 0.16
LDB3-209ENST00000623056 PPM1EQ8WY54 764 aa16.02■□□□□ 0.16
LDB3-209ENST00000623056 ADD3Q9UEY8 706 aaKnown RBP16.02■□□□□ 0.16
LDB3-209ENST00000623056 ALS2Q96Q42 1657 aa16.02■□□□□ 0.16
LDB3-209ENST00000623056 ANKRD65E5RJM6 399 aa16.02■□□□□ 0.15
LDB3-209ENST00000623056 WDR93Q6P2C0 686 aa16.02■□□□□ 0.15
LDB3-209ENST00000623056 MYL10Q9BUA6 226 aa16.02■□□□□ 0.15
LDB3-209ENST00000623056 PLEKHA4Q9H4M7 779 aa16.02■□□□□ 0.15
LDB3-209ENST00000623056 FAM217BQ9NTX9 383 aaPredicted RBP16.02■□□□□ 0.15
LDB3-209ENST00000623056 CEP126Q9P2H0 1117 aa16.02■□□□□ 0.15
LDB3-209ENST00000623056 JRKLQ9Y4A0 524 aa16.02■□□□□ 0.15
LDB3-209ENST00000623056 GOLGA8AA7E2F4 631 aa16.01■□□□□ 0.15
LDB3-209ENST00000623056 BTBD18B2RXH4 712 aa16.01■□□□□ 0.15
LDB3-209ENST00000623056 RNF40O75150 1001 aa16.01■□□□□ 0.15
LDB3-209ENST00000623056 GYPCP04921 128 aa16.01■□□□□ 0.15
LDB3-209ENST00000623056 FECHP22830 423 aa16.01■□□□□ 0.15
LDB3-209ENST00000623056 ZAP70P43403 619 aa16.01■□□□□ 0.15
LDB3-209ENST00000623056 FXR1P51114 621 aaKnown RBP eCLIP16.01■□□□□ 0.15
LDB3-209ENST00000623056 STX17P56962 302 aa16.01■□□□□ 0.15
LDB3-209ENST00000623056 KANK3Q6NY19 840 aa16.01■□□□□ 0.15
LDB3-209ENST00000623056 CNGA4Q8IV77 575 aa16.01■□□□□ 0.15
LDB3-209ENST00000623056 XAGE2Q96GT9 111 aa16.01■□□□□ 0.15
LDB3-209ENST00000623056 SLC26A6Q9BXS9 759 aa16.01■□□□□ 0.15
LDB3-209ENST00000623056 CWC25Q9NXE8 425 aaPredicted RBP16.01■□□□□ 0.15
LDB3-209ENST00000623056 SYNRGQ9UMZ2 1314 aa16.01■□□□□ 0.15
LDB3-209ENST00000623056 PPFIA4O75335 1185 aa16.01■□□□□ 0.15
LDB3-209ENST00000623056 PHKG2P15735 406 aa16.01■□□□□ 0.15
LDB3-209ENST00000623056 ARHGAP25P42331 645 aa16.01■□□□□ 0.15
LDB3-209ENST00000623056 KLHL10Q6JEL2 608 aa16.01■□□□□ 0.15
LDB3-209ENST00000623056 WWC3Q9ULE0 1092 aa16.01■□□□□ 0.15
LDB3-209ENST00000623056 XIRP1Q702N8 1843 aaKnown RBP16.01■□□□□ 0.15
LDB3-209ENST00000623056 B4E1Z4 1266 aa16■□□□□ 0.15
LDB3-209ENST00000623056 CD44P16070 742 aaKnown RBP16■□□□□ 0.15
LDB3-209ENST00000623056 AARSP49588 968 aaKnown RBP eCLIP16■□□□□ 0.15
LDB3-209ENST00000623056 ERVK-24P63145 666 aa16■□□□□ 0.15
LDB3-209ENST00000623056 AMPD2Q01433 879 aa16■□□□□ 0.15
LDB3-209ENST00000623056 CDKAL1Q5VV42 579 aa16■□□□□ 0.15
LDB3-209ENST00000623056 NCAPH2Q6IBW4 605 aa16■□□□□ 0.15
LDB3-209ENST00000623056 PI16Q6UXB8 463 aa16■□□□□ 0.15
LDB3-209ENST00000623056 NFXL1Q6ZNB6 911 aa16■□□□□ 0.15
LDB3-209ENST00000623056 ZNF579Q8NAF0 562 aaKnown RBP16■□□□□ 0.15
LDB3-209ENST00000623056 CCDC51Q96ER9 411 aa16■□□□□ 0.15
LDB3-209ENST00000623056 VIPAS39Q9H9C1 493 aa16■□□□□ 0.15
LDB3-209ENST00000623056 MYO6Q9UM54 1294 aa16■□□□□ 0.15
LDB3-209ENST00000623056 SYF2O95926 243 aaKnown RBP16■□□□□ 0.15
LDB3-209ENST00000623056 MMP1P03956 469 aa16■□□□□ 0.15
LDB3-209ENST00000623056 SSRP1Q08945 709 aaKnown RBP16■□□□□ 0.15
LDB3-209ENST00000623056 CUL4BQ13620 913 aa16■□□□□ 0.15
LDB3-209ENST00000623056 USP49Q70CQ1 688 aa16■□□□□ 0.15
LDB3-209ENST00000623056 DIS3L2Q8IYB7 885 aaKnown RBP16■□□□□ 0.15
LDB3-209ENST00000623056 AFAP1L1Q8TED9 768 aa16■□□□□ 0.15
LDB3-209ENST00000623056 CTAGE1Q96RT6 745 aa16■□□□□ 0.15
LDB3-209ENST00000623056 BRMS1Q9HCU9 246 aa16■□□□□ 0.15
LDB3-209ENST00000623056 MYO1AQ9UBC5 1043 aa16■□□□□ 0.15
LDB3-209ENST00000623056 STK36Q9NRP7 1315 aa15.99■□□□□ 0.15
LDB3-209ENST00000623056 FILIP1LQ4L180 1135 aa15.99■□□□□ 0.15
LDB3-209ENST00000623056 TMTC1Q8IUR5 882 aa15.99■□□□□ 0.15
LDB3-209ENST00000623056 IGDCC4Q8TDY8 1250 aa15.99■□□□□ 0.15
LDB3-209ENST00000623056 RAPGEF4Q8WZA2 1011 aa15.99■□□□□ 0.15
LDB3-209ENST00000623056 LY9Q9HBG7 655 aa15.99■□□□□ 0.15
LDB3-209ENST00000623056 PCDHB6Q9Y5E3 794 aa15.99■□□□□ 0.15
LDB3-209ENST00000623056 PRPF6O94906 941 aaKnown RBP15.99■□□□□ 0.15
LDB3-209ENST00000623056 FMNL1O95466 1100 aaPredicted RBP15.99■□□□□ 0.15
LDB3-209ENST00000623056 GUCY2CP25092 1073 aa15.99■□□□□ 0.15
LDB3-209ENST00000623056 GUCY1A2P33402 732 aa15.99■□□□□ 0.15
LDB3-209ENST00000623056 SAFBQ15424 915 aaKnown RBP eCLIP15.99■□□□□ 0.15
LDB3-209ENST00000623056 CT47A1Q5JQC4 288 aaPredicted RBP15.99■□□□□ 0.15
LDB3-209ENST00000623056 CTCFLQ8NI51 663 aaPredicted RBP15.99■□□□□ 0.15
LDB3-209ENST00000623056 TMEM87BQ96K49 555 aa15.99■□□□□ 0.15
LDB3-209ENST00000623056 KCNJ14Q9UNX9 436 aa15.99■□□□□ 0.15
LDB3-209ENST00000623056 SRPRBQ9Y5M8 271 aaKnown RBP15.99■□□□□ 0.15
LDB3-209ENST00000623056 ITIH6Q6UXX5 1313 aa15.98■□□□□ 0.15
LDB3-209ENST00000623056 TJP1Q07157 1748 aa15.98■□□□□ 0.15
LDB3-209ENST00000623056 RGPD5Q99666 1765 aa15.98■□□□□ 0.15
LDB3-209ENST00000623056 RILPL1Q5EBL4 403 aa15.98■□□□□ 0.15
LDB3-209ENST00000623056 CCDC148Q8NFR7 591 aa15.98■□□□□ 0.15
LDB3-209ENST00000623056 CSRNP2Q9H175 543 aa15.98■□□□□ 0.15
LDB3-209ENST00000623056 AKAP17AQ02040 695 aaKnown RBP15.97■□□□□ 0.15
LDB3-209ENST00000623056 CHRNA2Q15822 529 aa15.97■□□□□ 0.15
LDB3-209ENST00000623056 TMEM67Q5HYA8 995 aa15.97■□□□□ 0.15
LDB3-209ENST00000623056 BRINP3Q76B58 766 aa15.97■□□□□ 0.15
LDB3-209ENST00000623056 SGMS1Q86VZ5 419 aa15.97■□□□□ 0.15
LDB3-209ENST00000623056 EFCAB13Q8IY85 973 aa15.97■□□□□ 0.15
LDB3-209ENST00000623056 HPCAL4Q9UM19 191 aa15.97■□□□□ 0.15
LDB3-209ENST00000623056 MYH8P13535 1937 aa15.97■□□□□ 0.15
LDB3-209ENST00000623056 WDR17Q8IZU2 1322 aa15.97■□□□□ 0.15
LDB3-209ENST00000623056 LTBP4Q8N2S1 1624 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms