RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 NECTIN1Q15223 517 aa23.42■■□□□ 1.34
UPF3A-211ENST00000618700 NOL9Q5SY16 702 aaKnown RBP23.42■■□□□ 1.34
UPF3A-211ENST00000618700 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.42■■□□□ 1.34
UPF3A-211ENST00000618700 SAPCD2Q86UD0 394 aa23.42■■□□□ 1.34
UPF3A-211ENST00000618700 TBC1D10CQ8IV04 446 aa23.42■■□□□ 1.34
UPF3A-211ENST00000618700 DNAJC5GQ8N7S2 189 aa23.42■■□□□ 1.34
UPF3A-211ENST00000618700 CREBZFQ9NS37 354 aa23.42■■□□□ 1.34
UPF3A-211ENST00000618700 DOCK1Q14185 1865 aa23.42■■□□□ 1.34
UPF3A-211ENST00000618700 MYH8P13535 1937 aa23.41■■□□□ 1.34
UPF3A-211ENST00000618700 MAP3K9P80192 1104 aa23.41■■□□□ 1.34
UPF3A-211ENST00000618700 ANKRD13AQ8IZ07 590 aa23.41■■□□□ 1.34
UPF3A-211ENST00000618700 STAG1Q8WVM7 1258 aa23.41■■□□□ 1.34
UPF3A-211ENST00000618700 CTNND1O60716 968 aaKnown RBP23.4■■□□□ 1.34
UPF3A-211ENST00000618700 CAP2P40123 477 aa23.4■■□□□ 1.34
UPF3A-211ENST00000618700 HUNKP57058 714 aa23.4■■□□□ 1.34
UPF3A-211ENST00000618700 PDE4BQ07343 736 aa23.4■■□□□ 1.34
UPF3A-211ENST00000618700 VGLL4Q14135 290 aa23.4■■□□□ 1.34
UPF3A-211ENST00000618700 STK11IPQ8N1F8 1099 aa23.4■■□□□ 1.34
UPF3A-211ENST00000618700 ZKSCAN4Q969J2 545 aaPredicted RBP23.4■■□□□ 1.34
UPF3A-211ENST00000618700 ATAD5Q96QE3 1844 aa23.4■■□□□ 1.34
UPF3A-211ENST00000618700 ORC4O43929 436 aa23.39■■□□□ 1.33
UPF3A-211ENST00000618700 EIF5BO60841 1220 aaKnown RBP23.39■■□□□ 1.33
UPF3A-211ENST00000618700 SEC24BO95487 1268 aa23.39■■□□□ 1.33
UPF3A-211ENST00000618700 PCP11498 1178 aaKnown RBP23.39■■□□□ 1.33
UPF3A-211ENST00000618700 RASA1P20936 1047 aa23.39■■□□□ 1.33
UPF3A-211ENST00000618700 CERKLQ49MI3 558 aaPredicted RBP23.39■■□□□ 1.33
UPF3A-211ENST00000618700 AKNAD1Q5T1N1 836 aa23.39■■□□□ 1.33
UPF3A-211ENST00000618700 CREB3L3Q68CJ9 461 aa23.39■■□□□ 1.33
UPF3A-211ENST00000618700 SCYL3Q8IZE3 742 aa23.39■■□□□ 1.33
UPF3A-211ENST00000618700 ZNF287Q9HBT7 754 aa23.39■■□□□ 1.33
UPF3A-211ENST00000618700 SNCAIPQ9Y6H5 919 aa23.39■■□□□ 1.33
UPF3A-211ENST00000618700 TAF6LQ9Y6J9 622 aa23.39■■□□□ 1.33
UPF3A-211ENST00000618700 GREB1LQ9C091 1923 aaPredicted RBP23.38■■□□□ 1.33
UPF3A-211ENST00000618700 SLC27A2O14975 620 aa23.38■■□□□ 1.33
UPF3A-211ENST00000618700 PRDM1O75626 825 aa23.38■■□□□ 1.33
UPF3A-211ENST00000618700 GDF11O95390 407 aa23.38■■□□□ 1.33
UPF3A-211ENST00000618700 JAG1P78504 1218 aa23.38■■□□□ 1.33
UPF3A-211ENST00000618700 SHROOM1Q2M3G4 852 aaPredicted RBP23.38■■□□□ 1.33
UPF3A-211ENST00000618700 HHIPL1Q96JK4 782 aa23.38■■□□□ 1.33
UPF3A-211ENST00000618700 CLMNQ96JQ2 1002 aa23.38■■□□□ 1.33
UPF3A-211ENST00000618700 USP26Q9BXU7 913 aa23.38■■□□□ 1.33
UPF3A-211ENST00000618700 RNF41Q9H4P4 317 aaPredicted RBP23.38■■□□□ 1.33
UPF3A-211ENST00000618700 GINM1Q9NU53 330 aa23.38■■□□□ 1.33
UPF3A-211ENST00000618700 CSADQ9Y600 493 aa23.38■■□□□ 1.33
UPF3A-211ENST00000618700 NEDD4P46934 1319 aa23.37■■□□□ 1.33
UPF3A-211ENST00000618700 PRKAR2AP13861 404 aaKnown RBP23.37■■□□□ 1.33
UPF3A-211ENST00000618700 KCNB2Q92953 911 aa23.37■■□□□ 1.33
UPF3A-211ENST00000618700 CCDC17Q96LX7 622 aa23.37■■□□□ 1.33
UPF3A-211ENST00000618700 MKNK2Q9HBH9 465 aa23.37■■□□□ 1.33
UPF3A-211ENST00000618700 INCENPQ9NQS7 918 aa23.37■■□□□ 1.33
UPF3A-211ENST00000618700 ZBTB21Q9ULJ3 1066 aa23.37■■□□□ 1.33
UPF3A-211ENST00000618700 ABT1Q9ULW3 272 aaKnown RBP23.37■■□□□ 1.33
UPF3A-211ENST00000618700 PLIN4Q96Q06 1357 aa23.37■■□□□ 1.33
UPF3A-211ENST00000618700 AKR1B1P15121 316 aa23.36■■□□□ 1.33
UPF3A-211ENST00000618700 HSPA4P34932 840 aa23.36■■□□□ 1.33
UPF3A-211ENST00000618700 GH2P01242 217 aa23.35■■□□□ 1.33
UPF3A-211ENST00000618700 ASNSP08243 561 aa23.35■■□□□ 1.33
UPF3A-211ENST00000618700 ABCB5Q2M3G0 1257 aa23.35■■□□□ 1.33
UPF3A-211ENST00000618700 MFSD6Q6ZSS7 791 aa23.35■■□□□ 1.33
UPF3A-211ENST00000618700 STOX1Q6ZVD7 989 aa23.35■■□□□ 1.33
UPF3A-211ENST00000618700 SPDYE5A6NIY4 337 aa23.34■■□□□ 1.33
UPF3A-211ENST00000618700 RASSF10A6NK89 507 aa23.34■■□□□ 1.33
UPF3A-211ENST00000618700 GUCY1A2P33402 732 aa23.34■■□□□ 1.33
UPF3A-211ENST00000618700 NT5C2P49902 561 aa23.34■■□□□ 1.33
UPF3A-211ENST00000618700 RNF20Q5VTR2 975 aa23.34■■□□□ 1.33
UPF3A-211ENST00000618700 NKX2-3Q8TAU0 364 aa23.34■■□□□ 1.33
UPF3A-211ENST00000618700 ELP3Q9H9T3 547 aa23.34■■□□□ 1.33
UPF3A-211ENST00000618700 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.34■■□□□ 1.33
UPF3A-211ENST00000618700 CEP350Q5VT06 3117 aa23.34■■□□□ 1.33
UPF3A-211ENST00000618700 PHIPQ8WWQ0 1821 aa23.33■■□□□ 1.33
UPF3A-211ENST00000618700 E7EWF7 191 aa23.33■■□□□ 1.33
UPF3A-211ENST00000618700 PTPRAP18433 802 aa23.33■■□□□ 1.33
UPF3A-211ENST00000618700 TSGA10IPQ3SY00 556 aa23.33■■□□□ 1.33
UPF3A-211ENST00000618700 RGMBQ6NW40 437 aa23.33■■□□□ 1.33
UPF3A-211ENST00000618700 TMEM179Q6ZVK1 233 aa23.33■■□□□ 1.33
UPF3A-211ENST00000618700 ZNF444Q8N0Y2 327 aaPredicted RBP23.33■■□□□ 1.33
UPF3A-211ENST00000618700 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.33■■□□□ 1.33
UPF3A-211ENST00000618700 CNNM2Q9H8M5 875 aa23.33■■□□□ 1.33
UPF3A-211ENST00000618700 PICK1Q9NRD5 415 aa23.33■■□□□ 1.33
UPF3A-211ENST00000618700 ERO1BQ86YB8 467 aa23.32■■□□□ 1.32
UPF3A-211ENST00000618700 RASAL3Q86YV0 1011 aa23.32■■□□□ 1.32
UPF3A-211ENST00000618700 RASEFQ8IZ41 740 aa23.32■■□□□ 1.32
UPF3A-211ENST00000618700 SLC10A4Q96EP9 437 aa23.32■■□□□ 1.32
UPF3A-211ENST00000618700 CABP5Q9NP86 173 aa23.32■■□□□ 1.32
UPF3A-211ENST00000618700 IGKV6D-41A0A0C4DH26 115 aa23.31■■□□□ 1.32
UPF3A-211ENST00000618700 MPHOSPH10O00566 681 aaKnown RBP23.31■■□□□ 1.32
UPF3A-211ENST00000618700 GJA5P36382 358 aa23.31■■□□□ 1.32
UPF3A-211ENST00000618700 FAM47AQ5JRC9 791 aa23.31■■□□□ 1.32
UPF3A-211ENST00000618700 RRP12Q5JTH9 1297 aaKnown RBP23.31■■□□□ 1.32
UPF3A-211ENST00000618700 NEDD1Q8NHV4 660 aa23.31■■□□□ 1.32
UPF3A-211ENST00000618700 ESR2Q92731 530 aa23.31■■□□□ 1.32
UPF3A-211ENST00000618700 OPTNQ96CV9 577 aa23.31■■□□□ 1.32
UPF3A-211ENST00000618700 KRT23Q9C075 422 aa23.31■■□□□ 1.32
UPF3A-211ENST00000618700 TOMM22Q9NS69 142 aa23.31■■□□□ 1.32
UPF3A-211ENST00000618700 TSPY2A6NKD2 308 aa23.3■■□□□ 1.32
UPF3A-211ENST00000618700 SLC10A3P09131 477 aa23.3■■□□□ 1.32
UPF3A-211ENST00000618700 ZKSCAN1P17029 563 aaPredicted RBP23.3■■□□□ 1.32
UPF3A-211ENST00000618700 ZNF157P51786 506 aaPredicted RBP23.3■■□□□ 1.32
UPF3A-211ENST00000618700 TFAP4Q01664 338 aa23.3■■□□□ 1.32
UPF3A-211ENST00000618700 PPATQ06203 517 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms