RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 DDX4Q9NQI0 724 aaKnown RBP9.07□□□□□ -0.96
NEK3-207ENST00000617054 ARPP21Q9UBL0 812 aaPredicted RBP9.07□□□□□ -0.96
NEK3-207ENST00000617054 ECE2O60344 883 aa9.07□□□□□ -0.96
NEK3-207ENST00000617054 LDHCP07864 332 aa9.07□□□□□ -0.96
NEK3-207ENST00000617054 DPEP1P16444 411 aa9.07□□□□□ -0.96
NEK3-207ENST00000617054 PDE4BQ07343 736 aa9.07□□□□□ -0.96
NEK3-207ENST00000617054 GIMAP6Q6P9H5 292 aa9.07□□□□□ -0.96
NEK3-207ENST00000617054 ZFPM1Q8IX07 1006 aa9.07□□□□□ -0.96
NEK3-207ENST00000617054 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.07□□□□□ -0.96
NEK3-207ENST00000617054 CLIC4Q9Y696 253 aa9.07□□□□□ -0.96
NEK3-207ENST00000617054 FLT1P17948 1338 aa9.07□□□□□ -0.96
NEK3-207ENST00000617054 FAM196BA6NMK8 535 aa9.07□□□□□ -0.96
NEK3-207ENST00000617054 EIF6P56537 245 aaKnown RBP9.07□□□□□ -0.96
NEK3-207ENST00000617054 SSRP1Q08945 709 aaKnown RBP9.07□□□□□ -0.96
NEK3-207ENST00000617054 NFIAQ12857 509 aa9.07□□□□□ -0.96
NEK3-207ENST00000617054 KRT40Q6A162 431 aa9.07□□□□□ -0.96
NEK3-207ENST00000617054 CLEC10AQ8IUN9 316 aa9.07□□□□□ -0.96
NEK3-207ENST00000617054 RBSNQ9H1K0 784 aa9.07□□□□□ -0.96
NEK3-207ENST00000617054 CPVLQ9H3G5 476 aa9.07□□□□□ -0.96
NEK3-207ENST00000617054 STX8Q9UNK0 236 aa9.07□□□□□ -0.96
NEK3-207ENST00000617054 GOLGA6L4A6NEF3 574 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 PYGBP11216 843 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 HMGB2P26583 209 aaKnown RBP9.06□□□□□ -0.96
NEK3-207ENST00000617054 PPP4CP60510 307 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 TMC4Q7Z404 712 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 NBPF11Q86T75 865 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 TMEM87AQ8NBN3 555 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 C7orf43Q8WVR3 580 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 ZNF277Q9NRM2 450 aaPredicted RBP9.06□□□□□ -0.96
NEK3-207ENST00000617054 USP40Q9NVE5 1235 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 V9GY48 417 aaPredicted RBP9.06□□□□□ -0.96
NEK3-207ENST00000617054 NRXN2Q9P2S2 1712 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 MBD3O95983 291 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 FGRP09769 529 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 TSPY3P0CV98 308 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 TSPY8P0CW00 308 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 ATP2B1P20020 1258 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 RCSD1Q6JBY9 416 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 TBC1D22AQ8WUA7 517 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 ZSCAN16Q9H4T2 348 aaPredicted RBP9.06□□□□□ -0.96
NEK3-207ENST00000617054 SCAF8Q9UPN6 1271 aaKnown RBP9.06□□□□□ -0.96
NEK3-207ENST00000617054 KIF3AQ9Y496 699 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 FAM205AQ6ZU69 1335 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 RIOK3O14730 519 aaKnown RBP9.06□□□□□ -0.96
NEK3-207ENST00000617054 RAD17O75943 681 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 GOLGA8HP0CJ92 632 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 KCNA3P22001 575 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 TROAPQ12815 778 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 GNL2Q13823 731 aaKnown RBP9.06□□□□□ -0.96
NEK3-207ENST00000617054 SBK1Q52WX2 424 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 RBM26Q5T8P6 1007 aaKnown RBP9.06□□□□□ -0.96
NEK3-207ENST00000617054 STYK1Q6J9G0 422 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 CATIPQ7Z7H3 387 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 ZNF444Q8N0Y2 327 aaPredicted RBP9.06□□□□□ -0.96
NEK3-207ENST00000617054 STAG2Q8N3U4 1231 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 CRACR2BQ8N4Y2 399 aaPredicted RBP9.06□□□□□ -0.96
NEK3-207ENST00000617054 CNKSR1Q969H4 720 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 SHISA4Q96DD7 197 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 FAM117AQ9C073 453 aa9.06□□□□□ -0.96
NEK3-207ENST00000617054 PSDA5PKW4 1024 aaPredicted RBP9.05□□□□□ -0.96
NEK3-207ENST00000617054 YDJCA8MPS7 323 aa9.05□□□□□ -0.96
NEK3-207ENST00000617054 BTBD18B2RXH4 712 aa9.05□□□□□ -0.96
NEK3-207ENST00000617054 PPIP5K2O43314 1243 aa9.05□□□□□ -0.96
NEK3-207ENST00000617054 NR1I2O75469 434 aa9.05□□□□□ -0.96
NEK3-207ENST00000617054 SLC3A2P08195 630 aaKnown RBP9.05□□□□□ -0.96
NEK3-207ENST00000617054 CDK8P49336 464 aa9.05□□□□□ -0.96
NEK3-207ENST00000617054 NR5A1Q13285 461 aa9.05□□□□□ -0.96
NEK3-207ENST00000617054 R3HDM1Q15032 1099 aaKnown RBP9.05□□□□□ -0.96
NEK3-207ENST00000617054 SHROOM1Q2M3G4 852 aaPredicted RBP9.05□□□□□ -0.96
NEK3-207ENST00000617054 CPLX2Q6PUV4 134 aaKnown RBP9.05□□□□□ -0.96
NEK3-207ENST00000617054 CKAP2LQ8IYA6 745 aa9.05□□□□□ -0.96
NEK3-207ENST00000617054 BICD2Q8TD16 824 aa9.05□□□□□ -0.96
NEK3-207ENST00000617054 ERCC4Q92889 916 aaPredicted RBP9.05□□□□□ -0.96
NEK3-207ENST00000617054 DACT1Q9NYF0 836 aa9.05□□□□□ -0.96
NEK3-207ENST00000617054 VPS54Q9P1Q0 977 aa9.05□□□□□ -0.96
NEK3-207ENST00000617054 ZBTB12Q9Y330 459 aaPredicted RBP9.05□□□□□ -0.96
NEK3-207ENST00000617054 LTBP1Q14766 1721 aa9.05□□□□□ -0.96
NEK3-207ENST00000617054 ADAMTSL1Q8N6G6 1762 aa9.05□□□□□ -0.96
NEK3-207ENST00000617054 WDHD1O75717 1129 aaPredicted RBP9.05□□□□□ -0.96
NEK3-207ENST00000617054 MARCKSP29966 332 aaPredicted RBP9.05□□□□□ -0.96
NEK3-207ENST00000617054 KIF23Q02241 960 aaPredicted RBP9.05□□□□□ -0.96
NEK3-207ENST00000617054 APOBEC3HQ6NTF7 200 aaKnown RBP9.05□□□□□ -0.96
NEK3-207ENST00000617054 CDC42EP5Q6NZY7 148 aa9.05□□□□□ -0.96
NEK3-207ENST00000617054 OXER1Q8TDS5 423 aa9.05□□□□□ -0.96
NEK3-207ENST00000617054 EYA3Q99504 573 aa9.05□□□□□ -0.96
NEK3-207ENST00000617054 SCAND2PQ9GZW5 306 aaPredicted RBP9.05□□□□□ -0.96
NEK3-207ENST00000617054 SCN9AQ15858 1988 aa9.05□□□□□ -0.96
NEK3-207ENST00000617054 A0A087WWV3 80 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 ADAMTS3O15072 1205 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 FMNL1O95466 1100 aaPredicted RBP9.04□□□□□ -0.96
NEK3-207ENST00000617054 IFNAR1P17181 557 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 RASA1P20936 1047 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 ME1P48163 572 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 TMTC2Q8N394 836 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 SRBD1Q8N5C6 995 aaKnown RBP9.04□□□□□ -0.96
NEK3-207ENST00000617054 TTLL6Q8N841 843 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 PCNTO95613 3336 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 LRRC37AA6NMS7 1700 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 TIAM2Q8IVF5 1701 aa9.04□□□□□ -0.96
NEK3-207ENST00000617054 ORC4O43929 436 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms