RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, human

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-223	ENST00000611659	IFIT3	O14879	490 aa	Known RBP	13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	PTPRE	P23469	700 aa		13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	CDC25A	P30304	524 aa		13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	MAGEA9	P43362	315 aa		13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	NTRK3	Q16288	839 aa		13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	NUP88	Q99567	741 aa	Predicted RBP	13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	SLF1	Q9BQI6	1058 aa		13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	CSRNP2	Q9H175	543 aa		13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	RNF40	O75150	1001 aa		13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	CABP4	P57796	275 aa		13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	RRP12	Q5JTH9	1297 aa	Known RBP	13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	STAM	Q92783	540 aa		13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	GUCA1B	Q9UMX6	200 aa		13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	TTF2	Q9UNY4	1162 aa	Known RBP	13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	GYPC	P04921	128 aa		13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	CD44	P16070	742 aa	Known RBP	13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	NT5DC1	Q5TFE4	455 aa		13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	SPATA1	Q5VX52	437 aa		13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	KRT28	Q7Z3Y7	464 aa		13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	CNGA4	Q8IV77	575 aa		13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	IFNL2	Q8IZJ0	200 aa		13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	TRIML1	Q8N9V2	468 aa		13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	ZKSCAN3	Q9BRR0	538 aa		13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	C5	P01031	1676 aa		13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	ENC1	O14682	589 aa		13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	ACTN4	O43707	911 aa	Known RBP	13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	ERCC5	P28715	1186 aa	Predicted RBP	13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	ICE2	Q659A1	982 aa		13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	TICAM2	Q86XR7	235 aa		13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	CCDC148	Q8NFR7	591 aa		13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	CABP5	Q9NP86	173 aa		13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	ADD3	Q9UEY8	706 aa	Known RBP	13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	MKRN1	Q9UHC7	482 aa	Known RBP	13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	WWC3	Q9ULE0	1092 aa		13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	MYO6	Q9UM54	1294 aa		13.54	□□□□□ -0.24
TPM3-223	ENST00000611659	AFDN	P55196	1824 aa	Known RBP	13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	NBPF26	B4DH59	902 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	N4BP3	O15049	544 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	MMP1	P03956	469 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	WHAMMP3	Q1A5X7	153 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	NBPF14	Q5TI25	921 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	KANK3	Q6NY19	840 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	NBPF10	Q6P3W6	841 aa	Known RBP	13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	CTR9	Q6PD62	1173 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	NBPF15	Q8N660	670 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	RIN2	Q8WYP3	895 aa	Predicted RBP	13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	VPS16	Q9H269	839 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	WDR19	Q8NEZ3	1342 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	ZMYND10	O75800	440 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	A1BG	P04217	495 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	RILPL1	Q5EBL4	403 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	APTX	Q7Z2E3	356 aa	Known RBP	13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	TRIM22	Q8IYM9	498 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	IGDCC4	Q8TDY8	1250 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	AFAP1L1	Q8TED9	768 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	EPSTI1	Q96J88	318 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	DRC1	Q96MC2	740 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	LY9	Q9HBG7	655 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	TRIM10	Q9UDY6	481 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	JRKL	Q9Y4A0	524 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	CIAO1	O76071	339 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	ERVK-24	P63145	666 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	CTDSPL2	Q05D32	466 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	TUBB2A	Q13885	445 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	TUBB2B	Q9BVA1	445 aa		13.53	□□□□□ -0.24
TPM3-223	ENST00000611659	NWD2	Q9ULI1	1742 aa		13.52	□□□□□ -0.24
TPM3-223	ENST00000611659	TUBB4B	P68371	445 aa		13.52	□□□□□ -0.24
TPM3-223	ENST00000611659	OXER1	Q8TDS5	423 aa		13.52	□□□□□ -0.24
TPM3-223	ENST00000611659	NUP133	Q8WUM0	1156 aa		13.52	□□□□□ -0.24
TPM3-223	ENST00000611659	TMEM87B	Q96K49	555 aa		13.52	□□□□□ -0.24
TPM3-223	ENST00000611659	CAPZA3	Q96KX2	299 aa		13.52	□□□□□ -0.24
TPM3-223	ENST00000611659	CTAGE1	Q96RT6	745 aa		13.52	□□□□□ -0.24
TPM3-223	ENST00000611659	MED4	Q9NPJ6	270 aa		13.52	□□□□□ -0.24
TPM3-223	ENST00000611659	HDAC6	Q9UBN7	1215 aa		13.52	□□□□□ -0.24
TPM3-223	ENST00000611659	CTNND2	Q9UQB3	1225 aa		13.52	□□□□□ -0.24
TPM3-223	ENST00000611659	PES1	O00541	588 aa	Known RBP	13.52	□□□□□ -0.25
TPM3-223	ENST00000611659	MCAM	P43121	646 aa		13.52	□□□□□ -0.25
TPM3-223	ENST00000611659	PPM1E	Q8WY54	764 aa		13.52	□□□□□ -0.25
TPM3-223	ENST00000611659	WASF1	Q92558	559 aa		13.52	□□□□□ -0.25
TPM3-223	ENST00000611659	HINFP	Q9BQA5	517 aa		13.52	□□□□□ -0.25
TPM3-223	ENST00000611659	ZSWIM5	Q9P217	1185 aa		13.52	□□□□□ -0.25
TPM3-223	ENST00000611659	RPS6KA5	O75582	802 aa		13.51	□□□□□ -0.25
TPM3-223	ENST00000611659	FMNL1	O95466	1100 aa	Predicted RBP	13.51	□□□□□ -0.25
TPM3-223	ENST00000611659	TMTC1	Q8IUR5	882 aa		13.51	□□□□□ -0.25
TPM3-223	ENST00000611659	ELOA2	Q8IYF1	753 aa	Predicted RBP	13.51	□□□□□ -0.25
TPM3-223	ENST00000611659	SMARCC1	Q92922	1105 aa	Predicted RBP	13.51	□□□□□ -0.25
TPM3-223	ENST00000611659	RABEP2	Q9H5N1	569 aa		13.51	□□□□□ -0.25
TPM3-223	ENST00000611659		A0A087X0B3	334 aa		13.51	□□□□□ -0.25
TPM3-223	ENST00000611659	SRGAP2	O75044	1071 aa		13.51	□□□□□ -0.25
TPM3-223	ENST00000611659	METTL24	Q5JXM2	366 aa		13.51	□□□□□ -0.25
TPM3-223	ENST00000611659	PROSER2	Q86WR7	435 aa	Predicted RBP	13.51	□□□□□ -0.25
TPM3-223	ENST00000611659	ABHD10	Q9NUJ1	306 aa		13.51	□□□□□ -0.25
TPM3-223	ENST00000611659	TFR2	Q9UP52	801 aa		13.51	□□□□□ -0.25
TPM3-223	ENST00000611659	SRPRB	Q9Y5M8	271 aa	Known RBP	13.51	□□□□□ -0.25
TPM3-223	ENST00000611659	ARHGAP23	Q9P227	1491 aa		13.51	□□□□□ -0.25
TPM3-223	ENST00000611659	RNF225	M0QZC1	329 aa	Predicted RBP	13.5	□□□□□ -0.25
TPM3-223	ENST00000611659	KRT9	P35527	623 aa		13.5	□□□□□ -0.25

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