RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 ASCC2Q9H1I8 757 aaPredicted RBP7.73□□□□□ -1.17
CUX1-220ENST00000607092 LRP2BPQ9P2M1 347 aa7.73□□□□□ -1.17
CUX1-220ENST00000607092 STAP2Q9UGK3 403 aa7.73□□□□□ -1.17
CUX1-220ENST00000607092 OGDHLQ9ULD0 1010 aa7.73□□□□□ -1.17
CUX1-220ENST00000607092 USP17L10C9JJH3 530 aa7.72□□□□□ -1.17
CUX1-220ENST00000607092 USP14P54578 494 aa7.72□□□□□ -1.17
CUX1-220ENST00000607092 TIMM10P62072 90 aa7.72□□□□□ -1.17
CUX1-220ENST00000607092 CCDC158Q5M9N0 1113 aa7.72□□□□□ -1.17
CUX1-220ENST00000607092 TREML2Q5T2D2 321 aa7.72□□□□□ -1.17
CUX1-220ENST00000607092 C7orf61Q8IZ16 206 aa7.72□□□□□ -1.17
CUX1-220ENST00000607092 CRACR2BQ8N4Y2 399 aaPredicted RBP7.72□□□□□ -1.17
CUX1-220ENST00000607092 DEFB123Q8N688 67 aa7.72□□□□□ -1.17
CUX1-220ENST00000607092 NSUN4Q96CB9 384 aaKnown RBP7.72□□□□□ -1.17
CUX1-220ENST00000607092 UBE2OQ9C0C9 1292 aaKnown RBP7.72□□□□□ -1.17
CUX1-220ENST00000607092 GPR108Q9NPR9 543 aa7.72□□□□□ -1.17
CUX1-220ENST00000607092 DDX4Q9NQI0 724 aaKnown RBP7.72□□□□□ -1.17
CUX1-220ENST00000607092 HMG20BQ9P0W2 317 aa7.72□□□□□ -1.17
CUX1-220ENST00000607092 PRKAG2Q9UGJ0 569 aa7.72□□□□□ -1.17
CUX1-220ENST00000607092 GJD2Q9UKL4 321 aa7.72□□□□□ -1.17
CUX1-220ENST00000607092 STXBP5LQ9Y2K9 1186 aa7.72□□□□□ -1.17
CUX1-220ENST00000607092 ZSWIM8A7E2V4 1837 aa7.72□□□□□ -1.17
CUX1-220ENST00000607092 BDP1A6H8Y1 2624 aa7.72□□□□□ -1.17
CUX1-220ENST00000607092 MYH2Q9UKX2 1941 aa7.72□□□□□ -1.17
CUX1-220ENST00000607092 GNAI2P04899 355 aa7.71□□□□□ -1.18
CUX1-220ENST00000607092 PRKAR2AP13861 404 aaKnown RBP7.71□□□□□ -1.18
CUX1-220ENST00000607092 ARID4AP29374 1257 aaPredicted RBP7.71□□□□□ -1.18
CUX1-220ENST00000607092 ADORA1P30542 326 aa7.71□□□□□ -1.18
CUX1-220ENST00000607092 PPP4CP60510 307 aa7.71□□□□□ -1.18
CUX1-220ENST00000607092 HERVK_113P62684 666 aa7.71□□□□□ -1.18
CUX1-220ENST00000607092 TFCP2Q12800 502 aa7.71□□□□□ -1.18
CUX1-220ENST00000607092 MAP3K21Q5TCX8 1036 aa7.71□□□□□ -1.18
CUX1-220ENST00000607092 MFSD14CQ5VZR4 134 aa7.71□□□□□ -1.18
CUX1-220ENST00000607092 NAA16Q6N069 864 aaPredicted RBP7.71□□□□□ -1.18
CUX1-220ENST00000607092 APBA2Q99767 749 aa7.71□□□□□ -1.18
CUX1-220ENST00000607092 LBHD1Q9BQE6 289 aaPredicted RBP7.71□□□□□ -1.18
CUX1-220ENST00000607092 NOB1Q9ULX3 412 aaKnown RBP7.71□□□□□ -1.18
CUX1-220ENST00000607092 PTPRFP10586 1907 aa7.7□□□□□ -1.18
CUX1-220ENST00000607092 LOC285556D6RIA3 1793 aa7.7□□□□□ -1.18
CUX1-220ENST00000607092 CYP2B6P20813 491 aa7.7□□□□□ -1.18
CUX1-220ENST00000607092 ERVK-9P63128 1117 aa7.7□□□□□ -1.18
CUX1-220ENST00000607092 ERVK-24P63145 666 aa7.7□□□□□ -1.18
CUX1-220ENST00000607092 MTMR2Q13614 643 aa7.7□□□□□ -1.18
CUX1-220ENST00000607092 GSE1Q14687 1217 aa7.7□□□□□ -1.18
CUX1-220ENST00000607092 TTC39AQ5SRH9 613 aa7.7□□□□□ -1.18
CUX1-220ENST00000607092 FAM109BQ6ICB4 259 aaPredicted RBP7.7□□□□□ -1.18
CUX1-220ENST00000607092 USP17L2Q6R6M4 530 aa7.7□□□□□ -1.18
CUX1-220ENST00000607092 PLEKHH3Q7Z736 793 aa7.7□□□□□ -1.18
CUX1-220ENST00000607092 TTC6Q86TZ1 520 aa7.7□□□□□ -1.18
CUX1-220ENST00000607092 METTL16Q86W50 562 aaKnown RBP7.7□□□□□ -1.18
CUX1-220ENST00000607092 TRIB2Q92519 343 aa7.7□□□□□ -1.18
CUX1-220ENST00000607092 ZNF512BQ96KM6 892 aaPredicted RBP7.7□□□□□ -1.18
CUX1-220ENST00000607092 SLC5A4Q9NY91 659 aa7.7□□□□□ -1.18
CUX1-220ENST00000607092 PA2G4Q9UQ80 394 aaKnown RBP7.7□□□□□ -1.18
CUX1-220ENST00000607092 RABGAP1Q9Y3P9 1069 aa7.7□□□□□ -1.18
CUX1-220ENST00000607092 IVNS1ABPQ9Y6Y0 642 aa7.7□□□□□ -1.18
CUX1-220ENST00000607092 NCOR1O75376 2440 aa7.7□□□□□ -1.18
CUX1-220ENST00000607092 USP17L15C9J2P7 530 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 USP17L13C9JLJ4 530 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 USP17L11C9JVI0 530 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 USP17L18D6R9N7 530 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 USP17L22D6RA61 530 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 USP17L17D6RBQ6 530 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 USP17L19D6RCP7 530 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 USP17L20D6RJB6 530 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 COL6A1P12109 1028 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 MAGEA10P43363 369 aaPredicted RBP7.69□□□□□ -1.18
CUX1-220ENST00000607092 NUBP1P53384 320 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 USP17L24Q0WX57 530 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 MAP2K5Q13163 448 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 OS9Q13438 667 aaPredicted RBP7.69□□□□□ -1.18
CUX1-220ENST00000607092 TPRNQ4KMQ1 711 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 TRMT2AQ8IZ69 625 aaKnown RBP7.69□□□□□ -1.18
CUX1-220ENST00000607092 HS6ST3Q8IZP7 471 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 DIS3LQ8TF46 1054 aaKnown RBP7.69□□□□□ -1.18
CUX1-220ENST00000607092 RNF25Q96BH1 459 aaPredicted RBP7.69□□□□□ -1.18
CUX1-220ENST00000607092 EDC3Q96F86 508 aaKnown RBP7.69□□□□□ -1.18
CUX1-220ENST00000607092 LRCH3Q96II8 777 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 P2RX7Q99572 595 aaKnown RBP7.69□□□□□ -1.18
CUX1-220ENST00000607092 MEIS3Q99687 375 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 FEZ1Q99689 392 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 CABP5Q9NP86 173 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 ZBTB21Q9ULJ3 1066 aa7.69□□□□□ -1.18
CUX1-220ENST00000607092 ZMYND8Q9ULU4 1186 aaPredicted RBP7.69□□□□□ -1.18
CUX1-220ENST00000607092 SLC15A5A6NIM6 579 aa7.68□□□□□ -1.18
CUX1-220ENST00000607092 FAM196BA6NMK8 535 aa7.68□□□□□ -1.18
CUX1-220ENST00000607092 SOX1O00570 391 aaPredicted RBP7.68□□□□□ -1.18
CUX1-220ENST00000607092 STRNO43815 780 aa7.68□□□□□ -1.18
CUX1-220ENST00000607092 HOXC6P09630 235 aa7.68□□□□□ -1.18
CUX1-220ENST00000607092 CACNB2Q08289 660 aaPredicted RBP7.68□□□□□ -1.18
CUX1-220ENST00000607092 LBX2Q6XYB7 198 aa7.68□□□□□ -1.18
CUX1-220ENST00000607092 GPR142Q7Z601 462 aa7.68□□□□□ -1.18
CUX1-220ENST00000607092 CCDC84Q86UT8 332 aaPredicted RBP7.68□□□□□ -1.18
CUX1-220ENST00000607092 ARRDC4Q8NCT1 418 aa7.68□□□□□ -1.18
CUX1-220ENST00000607092 SH3RF3Q8TEJ3 882 aaPredicted RBP7.68□□□□□ -1.18
CUX1-220ENST00000607092 TGFBRAP1Q8WUH2 860 aa7.68□□□□□ -1.18
CUX1-220ENST00000607092 C12orf42Q96LP6 360 aa7.68□□□□□ -1.18
CUX1-220ENST00000607092 PAGR1Q9BTK6 254 aa7.68□□□□□ -1.18
CUX1-220ENST00000607092 EHD4Q9H223 541 aa7.68□□□□□ -1.18
CUX1-220ENST00000607092 MTMR10Q9NXD2 777 aa7.68□□□□□ -1.18
CUX1-220ENST00000607092 AATFQ9NY61 560 aaKnown RBP eCLIP7.68□□□□□ -1.181e-6■■■■■ 27.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms