RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 SH3D19Q5HYK7 790 aa31.52■■■□□ 2.64
PNKP-216ENST00000601816 ADD2P35612 726 aa31.51■■■□□ 2.63
PNKP-216ENST00000601816 FCGRTP55899 365 aa31.51■■■□□ 2.63
PNKP-216ENST00000601816 SHROOM1Q2M3G4 852 aaPredicted RBP31.51■■■□□ 2.63
PNKP-216ENST00000601816 SRRDQ9UH36 339 aa31.51■■■□□ 2.63
PNKP-216ENST00000601816 OSBPP22059 807 aa31.5■■■□□ 2.63
PNKP-216ENST00000601816 BACE1P56817 501 aa31.5■■■□□ 2.63
PNKP-216ENST00000601816 MTMR2Q13614 643 aa31.5■■■□□ 2.63
PNKP-216ENST00000601816 LCORLQ8N3X6 602 aa31.5■■■□□ 2.63
PNKP-216ENST00000601816 ZNF333Q96JL9 665 aa31.5■■■□□ 2.63
PNKP-216ENST00000601816 ECHDC1Q9NTX5 307 aa31.5■■■□□ 2.63
PNKP-216ENST00000601816 POLR3DP05423 398 aaPredicted RBP31.49■■■□□ 2.63
PNKP-216ENST00000601816 TATDN1Q6P1N9 297 aa31.49■■■□□ 2.63
PNKP-216ENST00000601816 TMOD4Q9NZQ9 345 aa31.49■■■□□ 2.63
PNKP-216ENST00000601816 DDX60LQ5H9U9 1706 aaKnown RBP31.49■■■□□ 2.63
PNKP-216ENST00000601816 NAV1Q8NEY1 1877 aa31.48■■■□□ 2.63
PNKP-216ENST00000601816 POTEFA5A3E0 1075 aa31.48■■■□□ 2.63
PNKP-216ENST00000601816 GPATCH3Q96I76 525 aa31.48■■■□□ 2.63
PNKP-216ENST00000601816 ARMT1Q9H993 441 aa31.48■■■□□ 2.63
PNKP-216ENST00000601816 MCM9Q9NXL9 1143 aa31.48■■■□□ 2.63
PNKP-216ENST00000601816 PCDHB15Q9Y5E8 787 aa31.48■■■□□ 2.63
PNKP-216ENST00000601816 MYPNQ86TC9 1320 aa31.48■■■□□ 2.63
PNKP-216ENST00000601816 C19orf81C9J6K1 198 aa31.47■■■□□ 2.63
PNKP-216ENST00000601816 GH2P01242 217 aa31.47■■■□□ 2.63
PNKP-216ENST00000601816 PLCD1P51178 756 aa31.47■■■□□ 2.63
PNKP-216ENST00000601816 SH3TC2Q8TF17 1288 aa31.47■■■□□ 2.63
PNKP-216ENST00000601816 SDR42E1Q8WUS8 393 aa31.47■■■□□ 2.63
PNKP-216ENST00000601816 USP17L10C9JJH3 530 aa31.46■■■□□ 2.63
PNKP-216ENST00000601816 SLFNL1Q499Z3 407 aa31.46■■■□□ 2.63
PNKP-216ENST00000601816 RAET1EQ8TD07 263 aa31.46■■■□□ 2.63
PNKP-216ENST00000601816 TMEM106CQ9BVX2 250 aa31.46■■■□□ 2.63
PNKP-216ENST00000601816 MBD4O95243 580 aa31.45■■■□□ 2.63
PNKP-216ENST00000601816 UBE3CQ15386 1083 aa31.45■■■□□ 2.63
PNKP-216ENST00000601816 CERKLQ49MI3 558 aaPredicted RBP31.45■■■□□ 2.63
PNKP-216ENST00000601816 ZSCAN25Q6NSZ9 544 aa31.45■■■□□ 2.63
PNKP-216ENST00000601816 ANKRD13CQ8N6S4 541 aa31.45■■■□□ 2.63
PNKP-216ENST00000601816 ASCC2Q9H1I8 757 aaPredicted RBP31.45■■■□□ 2.63
PNKP-216ENST00000601816 DCP1AQ9NPI6 582 aaPredicted RBP31.45■■■□□ 2.63
PNKP-216ENST00000601816 GCLCP48506 637 aaPredicted RBP31.44■■■□□ 2.62
PNKP-216ENST00000601816 RBBP6Q7Z6E9 1792 aaKnown RBP31.43■■■□□ 2.62
PNKP-216ENST00000601816 SHMT1P34896 483 aa31.43■■■□□ 2.62
PNKP-216ENST00000601816 PRKCZQ05513 592 aa31.43■■■□□ 2.62
PNKP-216ENST00000601816 FAM110CQ1W6H9 321 aa31.43■■■□□ 2.62
PNKP-216ENST00000601816 ABCB5Q2M3G0 1257 aa31.43■■■□□ 2.62
PNKP-216ENST00000601816 IRX3P78415 501 aaPredicted RBP31.42■■■□□ 2.62
PNKP-216ENST00000601816 CRBNQ96SW2 442 aa31.42■■■□□ 2.62
PNKP-216ENST00000601816 CABP5Q9NP86 173 aa31.42■■■□□ 2.62
PNKP-216ENST00000601816 CENPFP49454 3210 aa31.42■■■□□ 2.62
PNKP-216ENST00000601816 MGAMO43451 1857 aa31.42■■■□□ 2.62
PNKP-216ENST00000601816 TNRC18O15417 2968 aaPredicted RBP31.41■■■□□ 2.62
PNKP-216ENST00000601816 TNPO2O14787 897 aaKnown RBP31.41■■■□□ 2.62
PNKP-216ENST00000601816 MYCP01106 439 aaPredicted RBP31.41■■■□□ 2.62
PNKP-216ENST00000601816 CHGBP05060 677 aa31.41■■■□□ 2.62
PNKP-216ENST00000601816 GABPAQ06546 454 aa31.41■■■□□ 2.62
PNKP-216ENST00000601816 RAB3GAP1Q15042 981 aa31.41■■■□□ 2.62
PNKP-216ENST00000601816 FEZ1Q99689 392 aa31.41■■■□□ 2.62
PNKP-216ENST00000601816 ATP8A2Q9NTI2 1148 aa31.41■■■□□ 2.62
PNKP-216ENST00000601816 MYH7P12883 1935 aa31.4■■■□□ 2.62
PNKP-216ENST00000601816 PRKAB2O43741 272 aa31.4■■■□□ 2.62
PNKP-216ENST00000601816 HOXA7P31268 230 aaPredicted RBP31.4■■■□□ 2.62
PNKP-216ENST00000601816 GRK4P32298 578 aa31.4■■■□□ 2.62
PNKP-216ENST00000601816 TSHZ3Q63HK5 1081 aa31.4■■■□□ 2.62
PNKP-216ENST00000601816 USP17L2Q6R6M4 530 aa31.4■■■□□ 2.62
PNKP-216ENST00000601816 EVX2Q03828 476 aa31.39■■■□□ 2.62
PNKP-216ENST00000601816 GABRQQ9UN88 632 aa31.39■■■□□ 2.62
PNKP-216ENST00000601816 CYP2D6P10635 497 aa31.38■■■□□ 2.61
PNKP-216ENST00000601816 EN2P19622 333 aaPredicted RBP31.38■■■□□ 2.61
PNKP-216ENST00000601816 DDRGK1Q96HY6 314 aa31.38■■■□□ 2.61
PNKP-216ENST00000601816 EMILIN3Q9NT22 766 aa31.38■■■□□ 2.61
PNKP-216ENST00000601816 KBTBD3Q8NAB2 608 aa31.37■■■□□ 2.61
PNKP-216ENST00000601816 TAOK2Q9UL54 1235 aa31.37■■■□□ 2.61
PNKP-216ENST00000601816 KIAA0100Q14667 2235 aaKnown RBP31.36■■■□□ 2.61
PNKP-216ENST00000601816 FLT3LGP49771 235 aa31.36■■■□□ 2.61
PNKP-216ENST00000601816 ZYXQ15942 572 aaKnown RBP31.36■■■□□ 2.61
PNKP-216ENST00000601816 AMOTL1Q8IY63 956 aa31.36■■■□□ 2.61
PNKP-216ENST00000601816 SLAIN1Q8ND83 568 aa31.36■■■□□ 2.61
PNKP-216ENST00000601816 COA7Q96BR5 231 aa31.36■■■□□ 2.61
PNKP-216ENST00000601816 PUS7LQ9H0K6 701 aaKnown RBP31.36■■■□□ 2.61
PNKP-216ENST00000601816 SWAP70Q9UH65 585 aa31.36■■■□□ 2.61
PNKP-216ENST00000601816 USP14P54578 494 aa31.35■■■□□ 2.61
PNKP-216ENST00000601816 HERVK_113P62684 666 aa31.35■■■□□ 2.61
PNKP-216ENST00000601816 C12orf42Q96LP6 360 aa31.35■■■□□ 2.61
PNKP-216ENST00000601816 P2RX7Q99572 595 aaKnown RBP31.35■■■□□ 2.61
PNKP-216ENST00000601816 KIAA1683Q9H0B3 1180 aa31.35■■■□□ 2.61
PNKP-216ENST00000601816 MORF4L1Q9UBU8 362 aa31.35■■■□□ 2.61
PNKP-216ENST00000601816 BIN2Q9UBW5 565 aaPredicted RBP31.35■■■□□ 2.61
PNKP-216ENST00000601816 SLC4A4Q9Y6R1 1079 aa31.35■■■□□ 2.61
PNKP-216ENST00000601816 TTC41PQ6P2S7 1318 aa31.34■■■□□ 2.61
PNKP-216ENST00000601816 MPHOSPH10O00566 681 aaKnown RBP31.34■■■□□ 2.61
PNKP-216ENST00000601816 SLC44A5Q8NCS7 719 aa31.34■■■□□ 2.61
PNKP-216ENST00000601816 ACER1Q8TDN7 264 aa31.34■■■□□ 2.61
PNKP-216ENST00000601816 GUCY1A2P33402 732 aa31.33■■■□□ 2.61
PNKP-216ENST00000601816 SEPT2Q15019 361 aa31.33■■■□□ 2.61
PNKP-216ENST00000601816 DYNLL2Q96FJ2 89 aa31.33■■■□□ 2.61
PNKP-216ENST00000601816 ERC2O15083 957 aa31.32■■■□□ 2.6
PNKP-216ENST00000601816 ADCY3O60266 1144 aa31.32■■■□□ 2.6
PNKP-216ENST00000601816 UBXN2AP68543 259 aa31.32■■■□□ 2.6
PNKP-216ENST00000601816 IRF5Q13568 498 aa31.32■■■□□ 2.6
PNKP-216ENST00000601816 MTFR1Q15390 333 aa31.32■■■□□ 2.6
PNKP-216ENST00000601816 C12orf60Q5U649 245 aa31.32■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms