RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 DLEC1Q9Y238 1755 aa16.75■□□□□ 0.27
VRK3-217ENST00000599538 A0A1W2PQ27 194 aa16.75■□□□□ 0.27
VRK3-217ENST00000599538 A0A1W2PQ64 194 aa16.75■□□□□ 0.27
VRK3-217ENST00000599538 A0A1W2PQD8 194 aa16.75■□□□□ 0.27
VRK3-217ENST00000599538 RIMBP2O15034 1052 aa16.75■□□□□ 0.27
VRK3-217ENST00000599538 DEXIO95424 95 aa16.75■□□□□ 0.27
VRK3-217ENST00000599538 MSL1Q68DK7 614 aa16.75■□□□□ 0.27
VRK3-217ENST00000599538 CATIPQ7Z7H3 387 aa16.75■□□□□ 0.27
VRK3-217ENST00000599538 SLC44A5Q8NCS7 719 aa16.75■□□□□ 0.27
VRK3-217ENST00000599538 OXER1Q8TDS5 423 aa16.75■□□□□ 0.27
VRK3-217ENST00000599538 LTBP1Q14766 1721 aa16.75■□□□□ 0.27
VRK3-217ENST00000599538 PPEF1O14829 653 aaPredicted RBP16.75■□□□□ 0.27
VRK3-217ENST00000599538 KINO60870 393 aaKnown RBP16.75■□□□□ 0.27
VRK3-217ENST00000599538 TOB1P50616 345 aaPredicted RBP16.75■□□□□ 0.27
VRK3-217ENST00000599538 PLCD1P51178 756 aa16.75■□□□□ 0.27
VRK3-217ENST00000599538 MFSD14BQ5SR56 506 aa16.75■□□□□ 0.27
VRK3-217ENST00000599538 RCSD1Q6JBY9 416 aa16.75■□□□□ 0.27
VRK3-217ENST00000599538 SASS6Q6UVJ0 657 aa16.75■□□□□ 0.27
VRK3-217ENST00000599538 MAPKAPK5Q8IW41 473 aa16.75■□□□□ 0.27
VRK3-217ENST00000599538 SAP30BPQ9UHR5 308 aaKnown RBP16.75■□□□□ 0.27
VRK3-217ENST00000599538 TSPY2A6NKD2 308 aa16.74■□□□□ 0.27
VRK3-217ENST00000599538 SRGNP10124 158 aa16.74■□□□□ 0.27
VRK3-217ENST00000599538 BTDP43251 543 aa16.74■□□□□ 0.27
VRK3-217ENST00000599538 PPP4CP60510 307 aa16.74■□□□□ 0.27
VRK3-217ENST00000599538 NOSTRINQ8IVI9 506 aa16.74■□□□□ 0.27
VRK3-217ENST00000599538 WASF1Q92558 559 aa16.74■□□□□ 0.27
VRK3-217ENST00000599538 PDE4BQ07343 736 aa16.73■□□□□ 0.27
VRK3-217ENST00000599538 HS1BP3Q53T59 392 aa16.73■□□□□ 0.27
VRK3-217ENST00000599538 TMED8Q6PL24 325 aaPredicted RBP16.73■□□□□ 0.27
VRK3-217ENST00000599538 C11orf57Q6ZUT1 292 aaPredicted RBP16.73■□□□□ 0.27
VRK3-217ENST00000599538 NLGN1Q8N2Q7 840 aa16.73■□□□□ 0.27
VRK3-217ENST00000599538 CLIC6Q96NY7 704 aa16.73■□□□□ 0.27
VRK3-217ENST00000599538 RNF26Q9BY78 433 aaPredicted RBP16.73■□□□□ 0.27
VRK3-217ENST00000599538 IL17RBQ9NRM6 502 aa16.73■□□□□ 0.27
VRK3-217ENST00000599538 VPS54Q9P1Q0 977 aa16.73■□□□□ 0.27
VRK3-217ENST00000599538 V9GY48 417 aaPredicted RBP16.73■□□□□ 0.27
VRK3-217ENST00000599538 LRRC37AA6NMS7 1700 aa16.73■□□□□ 0.27
VRK3-217ENST00000599538 BAG3O95817 575 aa16.73■□□□□ 0.27
VRK3-217ENST00000599538 MMP10P09238 476 aa16.73■□□□□ 0.27
VRK3-217ENST00000599538 GSTO1P78417 241 aa16.73■□□□□ 0.27
VRK3-217ENST00000599538 TFAP4Q01664 338 aa16.73■□□□□ 0.27
VRK3-217ENST00000599538 ZNF772Q68DY9 489 aaPredicted RBP16.73■□□□□ 0.27
VRK3-217ENST00000599538 SP8Q8IXZ3 490 aa16.73■□□□□ 0.27
VRK3-217ENST00000599538 NOL7Q9UMY1 257 aaKnown RBP16.73■□□□□ 0.27
VRK3-217ENST00000599538 CDK5RAP2Q96SN8 1893 aa16.72■□□□□ 0.27
VRK3-217ENST00000599538 FAM205CA6NFA0 338 aa16.72■□□□□ 0.27
VRK3-217ENST00000599538 SLC3A2P08195 630 aaKnown RBP16.72■□□□□ 0.27
VRK3-217ENST00000599538 VEGFAP15692 232 aaPredicted RBP16.72■□□□□ 0.27
VRK3-217ENST00000599538 GTF2IP78347 998 aa16.72■□□□□ 0.27
VRK3-217ENST00000599538 SRBD1Q8N5C6 995 aaKnown RBP16.72■□□□□ 0.27
VRK3-217ENST00000599538 ATP6V0A2Q9Y487 856 aa16.72■□□□□ 0.27
VRK3-217ENST00000599538 USP17L3A6NCW0 530 aa16.72■□□□□ 0.27
VRK3-217ENST00000599538 USP17L4A6NCW7 530 aa16.72■□□□□ 0.27
VRK3-217ENST00000599538 PFKFB1P16118 471 aa16.72■□□□□ 0.27
VRK3-217ENST00000599538 ZNF165P49910 485 aa16.72■□□□□ 0.27
VRK3-217ENST00000599538 SHC4Q6S5L8 630 aa16.72■□□□□ 0.27
VRK3-217ENST00000599538 USP17L1Q7RTZ2 530 aa16.72■□□□□ 0.27
VRK3-217ENST00000599538 NRXN2Q9P2S2 1712 aa16.71■□□□□ 0.27
VRK3-217ENST00000599538 GPR75-ASB3A0A0A6YYF3 556 aa16.71■□□□□ 0.27
VRK3-217ENST00000599538 CTAGE5O15320 804 aa16.71■□□□□ 0.27
VRK3-217ENST00000599538 ZNF202O95125 648 aa16.71■□□□□ 0.27
VRK3-217ENST00000599538 LDHCP07864 332 aa16.71■□□□□ 0.27
VRK3-217ENST00000599538 CMA1P23946 247 aa16.71■□□□□ 0.27
VRK3-217ENST00000599538 RHBDL3P58872 404 aa16.71■□□□□ 0.27
VRK3-217ENST00000599538 EARS2Q5JPH6 523 aaKnown RBP16.71■□□□□ 0.27
VRK3-217ENST00000599538 TMTC3Q6ZXV5 915 aa16.71■□□□□ 0.27
VRK3-217ENST00000599538 FBXW7Q969H0 707 aa16.71■□□□□ 0.27
VRK3-217ENST00000599538 MXD3Q9BW11 206 aa16.71■□□□□ 0.27
VRK3-217ENST00000599538 PRPF3O43395 683 aaKnown RBP16.7■□□□□ 0.26
VRK3-217ENST00000599538 DDAH1O94760 285 aa16.7■□□□□ 0.26
VRK3-217ENST00000599538 PTMAP06454 111 aaKnown RBP16.7■□□□□ 0.26
VRK3-217ENST00000599538 GRIN1Q05586 938 aa16.7■□□□□ 0.26
VRK3-217ENST00000599538 PPP2R5BQ15173 497 aa16.7■□□□□ 0.26
VRK3-217ENST00000599538 PIBF1Q8WXW3 757 aa16.7■□□□□ 0.26
VRK3-217ENST00000599538 ZNF830Q96NB3 372 aaPredicted RBP16.7■□□□□ 0.26
VRK3-217ENST00000599538 SDF4Q9BRK5 362 aa16.7■□□□□ 0.26
VRK3-217ENST00000599538 FOXP1Q9H334 677 aaPredicted RBP16.7■□□□□ 0.26
VRK3-217ENST00000599538 CCDC39Q9UFE4 941 aa16.7■□□□□ 0.26
VRK3-217ENST00000599538 PCDHB6Q9Y5E3 794 aa16.7■□□□□ 0.26
VRK3-217ENST00000599538 NAV1Q8NEY1 1877 aa16.7■□□□□ 0.26
VRK3-217ENST00000599538 CNTNAP5Q8WYK1 1306 aa16.7■□□□□ 0.26
VRK3-217ENST00000599538 PPP6R2O75170 966 aa16.7■□□□□ 0.26
VRK3-217ENST00000599538 SAFBQ15424 915 aaKnown RBP eCLIP16.7■□□□□ 0.26
VRK3-217ENST00000599538 NOM1Q5C9Z4 860 aaKnown RBP16.7■□□□□ 0.26
VRK3-217ENST00000599538 NOL10Q9BSC4 688 aaKnown RBP16.7■□□□□ 0.26
VRK3-217ENST00000599538 RBM28Q9NW13 759 aaKnown RBP16.7■□□□□ 0.26
VRK3-217ENST00000599538 ZKSCAN5Q9Y2L8 839 aa16.7■□□□□ 0.26
VRK3-217ENST00000599538 COL11A2P13942 1736 aaPredicted RBP16.7■□□□□ 0.26
VRK3-217ENST00000599538 CALM1P0DP23 149 aa16.69■□□□□ 0.26
VRK3-217ENST00000599538 CALM2P0DP24 149 aa16.69■□□□□ 0.26
VRK3-217ENST00000599538 CALM3P0DP25 149 aa16.69■□□□□ 0.26
VRK3-217ENST00000599538 ATP2B1P20020 1258 aa16.69■□□□□ 0.26
VRK3-217ENST00000599538 AKAP17AQ02040 695 aaKnown RBP16.69■□□□□ 0.26
VRK3-217ENST00000599538 IQCB1Q15051 598 aa16.69■□□□□ 0.26
VRK3-217ENST00000599538 SPECC1Q5M775 1068 aa16.69■□□□□ 0.26
VRK3-217ENST00000599538 TEX11Q8IYF3 940 aa16.69■□□□□ 0.26
VRK3-217ENST00000599538 CERS5Q8N5B7 392 aa16.69■□□□□ 0.26
VRK3-217ENST00000599538 PHF20Q9BVI0 1012 aa16.69■□□□□ 0.26
VRK3-217ENST00000599538 MKNK2Q9HBH9 465 aa16.69■□□□□ 0.26
VRK3-217ENST00000599538 ROBO3Q96MS0 1386 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms