RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 R3HDMLQ9H3Y0 253 aa17.01■□□□□ 0.31
SHKBP1-217ENST00000598558 INCENPQ9NQS7 918 aa17.01■□□□□ 0.31
SHKBP1-217ENST00000598558 PICK1Q9NRD5 415 aa17.01■□□□□ 0.31
SHKBP1-217ENST00000598558 DIAPH3Q9NSV4 1193 aa17.01■□□□□ 0.31
SHKBP1-217ENST00000598558 PCNTO95613 3336 aa17.01■□□□□ 0.31
SHKBP1-217ENST00000598558 CCDC171Q6TFL3 1326 aa17■□□□□ 0.31
SHKBP1-217ENST00000598558 AK9Q5TCS8 1911 aa17■□□□□ 0.31
SHKBP1-217ENST00000598558 TRPA1O75762 1119 aa17■□□□□ 0.31
SHKBP1-217ENST00000598558 GH2P01242 217 aa17■□□□□ 0.31
SHKBP1-217ENST00000598558 TDO2P48775 406 aa17■□□□□ 0.31
SHKBP1-217ENST00000598558 DGKZQ13574 1117 aa17■□□□□ 0.31
SHKBP1-217ENST00000598558 CERKLQ49MI3 558 aaPredicted RBP17■□□□□ 0.31
SHKBP1-217ENST00000598558 C16orf86Q6ZW13 317 aa17■□□□□ 0.31
SHKBP1-217ENST00000598558 IFNL1Q8IU54 200 aa17■□□□□ 0.31
SHKBP1-217ENST00000598558 ARPP21Q9UBL0 812 aaPredicted RBP17■□□□□ 0.31
SHKBP1-217ENST00000598558 ZBTB21Q9ULJ3 1066 aa17■□□□□ 0.31
SHKBP1-217ENST00000598558 CCL15-CCL14A0A0B4J2E2 113 aa16.99■□□□□ 0.31
SHKBP1-217ENST00000598558 FGAP02671 866 aa16.99■□□□□ 0.31
SHKBP1-217ENST00000598558 AKR1B1P15121 316 aa16.99■□□□□ 0.31
SHKBP1-217ENST00000598558 GTF2A2P52657 109 aa16.99■□□□□ 0.31
SHKBP1-217ENST00000598558 ALX1Q15699 326 aa16.99■□□□□ 0.31
SHKBP1-217ENST00000598558 CCL15Q16663 113 aa16.99■□□□□ 0.31
SHKBP1-217ENST00000598558 FAM43AQ8N2R8 423 aa16.99■□□□□ 0.31
SHKBP1-217ENST00000598558 DDRGK1Q96HY6 314 aa16.99■□□□□ 0.31
SHKBP1-217ENST00000598558 MYH1P12882 1939 aa16.98■□□□□ 0.31
SHKBP1-217ENST00000598558 TRIM75PA6NK02 468 aa16.98■□□□□ 0.31
SHKBP1-217ENST00000598558 USP17L5A8MUK1 530 aa16.98■□□□□ 0.31
SHKBP1-217ENST00000598558 CXCL11O14625 94 aa16.98■□□□□ 0.31
SHKBP1-217ENST00000598558 HSPA8P11142 646 aaKnown RBP16.98■□□□□ 0.31
SHKBP1-217ENST00000598558 SPP2Q13103 211 aa16.98■□□□□ 0.31
SHKBP1-217ENST00000598558 SNAPC2Q13487 334 aa16.98■□□□□ 0.31
SHKBP1-217ENST00000598558 ABCB5Q2M3G0 1257 aa16.98■□□□□ 0.31
SHKBP1-217ENST00000598558 GPAT2Q6NUI2 795 aa16.98■□□□□ 0.31
SHKBP1-217ENST00000598558 SIAH1Q8IUQ4 282 aa16.98■□□□□ 0.31
SHKBP1-217ENST00000598558 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.98■□□□□ 0.31
SHKBP1-217ENST00000598558 NAPBQ9H115 298 aa16.98■□□□□ 0.31
SHKBP1-217ENST00000598558 NAV1Q8NEY1 1877 aa16.98■□□□□ 0.31
SHKBP1-217ENST00000598558 BTBD19C9JJ37 291 aa16.97■□□□□ 0.31
SHKBP1-217ENST00000598558 HIP1O00291 1037 aa16.97■□□□□ 0.31
SHKBP1-217ENST00000598558 PRDM1O75626 825 aa16.97■□□□□ 0.31
SHKBP1-217ENST00000598558 TBC1D8O95759 1140 aa16.97■□□□□ 0.31
SHKBP1-217ENST00000598558 ASNSP08243 561 aa16.97■□□□□ 0.31
SHKBP1-217ENST00000598558 INHBEP58166 350 aa16.97■□□□□ 0.31
SHKBP1-217ENST00000598558 CTDSPL2Q05D32 466 aa16.97■□□□□ 0.31
SHKBP1-217ENST00000598558 PPARAQ07869 468 aa16.97■□□□□ 0.31
SHKBP1-217ENST00000598558 SREBF2Q12772 1141 aa16.97■□□□□ 0.31
SHKBP1-217ENST00000598558 SEPT2Q15019 361 aa16.97■□□□□ 0.31
SHKBP1-217ENST00000598558 BMP2KLQ5H9B9 411 aa16.97■□□□□ 0.31
SHKBP1-217ENST00000598558 CLEC10AQ8IUN9 316 aa16.97■□□□□ 0.31
SHKBP1-217ENST00000598558 REM2Q8IYK8 340 aaPredicted RBP16.97■□□□□ 0.31
SHKBP1-217ENST00000598558 NKX2-3Q8TAU0 364 aa16.97■□□□□ 0.31
SHKBP1-217ENST00000598558 WDR18Q9BV38 432 aa16.97■□□□□ 0.31
SHKBP1-217ENST00000598558 NACAP1Q9BZK3 213 aa16.97■□□□□ 0.31
SHKBP1-217ENST00000598558 NBPF3Q9H094 633 aa16.97■□□□□ 0.31
SHKBP1-217ENST00000598558 SWAP70Q9UH65 585 aa16.97■□□□□ 0.31
SHKBP1-217ENST00000598558 A0A0G2JLL6 359 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-217ENST00000598558 CETPP11597 493 aa16.96■□□□□ 0.31
SHKBP1-217ENST00000598558 RASA1P20936 1047 aa16.96■□□□□ 0.31
SHKBP1-217ENST00000598558 PRRT2Q7Z6L0 340 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-217ENST00000598558 ZNF280CQ8ND82 737 aa16.96■□□□□ 0.31
SHKBP1-217ENST00000598558 ACER1Q8TDN7 264 aa16.96■□□□□ 0.31
SHKBP1-217ENST00000598558 ROBO3Q96MS0 1386 aa16.96■□□□□ 0.31
SHKBP1-217ENST00000598558 BAZ2AQ9UIF9 1905 aaKnown RBP16.96■□□□□ 0.3
SHKBP1-217ENST00000598558 A0A1W2PRG0 241 aa16.95■□□□□ 0.3
SHKBP1-217ENST00000598558 SGSM2O43147 1006 aa16.95■□□□□ 0.3
SHKBP1-217ENST00000598558 LBX1P52954 281 aa16.95■□□□□ 0.3
SHKBP1-217ENST00000598558 PTH1RQ03431 593 aa16.95■□□□□ 0.3
SHKBP1-217ENST00000598558 RAB3GAP1Q15042 981 aa16.95■□□□□ 0.3
SHKBP1-217ENST00000598558 AMOTL1Q8IY63 956 aa16.95■□□□□ 0.3
SHKBP1-217ENST00000598558 GINM1Q9NU53 330 aa16.95■□□□□ 0.3
SHKBP1-217ENST00000598558 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.95■□□□□ 0.3
SHKBP1-217ENST00000598558 MPHOSPH10O00566 681 aaKnown RBP16.94■□□□□ 0.3
SHKBP1-217ENST00000598558 BEGAINQ9BUH8 593 aa16.94■□□□□ 0.3
SHKBP1-217ENST00000598558 SAGE1Q9NXZ1 904 aa16.94■□□□□ 0.3
SHKBP1-217ENST00000598558 ANAPC4Q9UJX5 808 aa16.94■□□□□ 0.3
SHKBP1-217ENST00000598558 CTCFP49711 727 aaPredicted RBP16.93■□□□□ 0.3
SHKBP1-217ENST00000598558 HMGCS2P54868 508 aa16.93■□□□□ 0.3
SHKBP1-217ENST00000598558 BACE1P56817 501 aa16.93■□□□□ 0.3
SHKBP1-217ENST00000598558 HAND2P61296 217 aa16.93■□□□□ 0.3
SHKBP1-217ENST00000598558 MTMR2Q13614 643 aa16.93■□□□□ 0.3
SHKBP1-217ENST00000598558 SH3D19Q5HYK7 790 aa16.93■□□□□ 0.3
SHKBP1-217ENST00000598558 TREML2Q5T2D2 321 aa16.93■□□□□ 0.3
SHKBP1-217ENST00000598558 GADL1Q6ZQY3 521 aa16.93■□□□□ 0.3
SHKBP1-217ENST00000598558 CABP5Q9NP86 173 aa16.93■□□□□ 0.3
SHKBP1-217ENST00000598558 EMILIN3Q9NT22 766 aa16.93■□□□□ 0.3
SHKBP1-217ENST00000598558 TAOK2Q9UL54 1235 aa16.93■□□□□ 0.3
SHKBP1-217ENST00000598558 DOCK1Q14185 1865 aa16.93■□□□□ 0.3
SHKBP1-217ENST00000598558 FGRP09769 529 aa16.92■□□□□ 0.3
SHKBP1-217ENST00000598558 MFAP1P55081 439 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-217ENST00000598558 CRHR2Q13324 411 aa16.92■□□□□ 0.3
SHKBP1-217ENST00000598558 FAM47AQ5JRC9 791 aa16.92■□□□□ 0.3
SHKBP1-217ENST00000598558 KIAA1755Q5JYT7 1200 aa16.92■□□□□ 0.3
SHKBP1-217ENST00000598558 ANKRD23Q86SG2 305 aa16.92■□□□□ 0.3
SHKBP1-217ENST00000598558 TBC1D10CQ8IV04 446 aa16.92■□□□□ 0.3
SHKBP1-217ENST00000598558 CCDC17Q96LX7 622 aa16.92■□□□□ 0.3
SHKBP1-217ENST00000598558 DSCC1Q9BVC3 393 aa16.92■□□□□ 0.3
SHKBP1-217ENST00000598558 CFHR5Q9BXR6 569 aa16.92■□□□□ 0.3
SHKBP1-217ENST00000598558 MKNK2Q9HBH9 465 aa16.92■□□□□ 0.3
SHKBP1-217ENST00000598558 AS3MTQ9HBK9 375 aa16.92■□□□□ 0.3
SHKBP1-217ENST00000598558 ZMYM6O95789 1325 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms