RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 TDO2P48775 406 aa13.28□□□□□ -0.28
LIG1-211ENST00000596457 GTF2A2P52657 109 aa13.28□□□□□ -0.28
LIG1-211ENST00000596457 PPATQ06203 517 aa13.28□□□□□ -0.28
LIG1-211ENST00000596457 PPIL2Q13356 520 aa13.28□□□□□ -0.28
LIG1-211ENST00000596457 CCL15Q16663 113 aa13.28□□□□□ -0.28
LIG1-211ENST00000596457 CTR9Q6PD62 1173 aa13.28□□□□□ -0.28
LIG1-211ENST00000596457 A0A0D9SFI3 127 aa13.27□□□□□ -0.29
LIG1-211ENST00000596457 SMIM22K7EJ46 135 aa13.27□□□□□ -0.29
LIG1-211ENST00000596457 MPHOSPH10O00566 681 aaKnown RBP13.27□□□□□ -0.29
LIG1-211ENST00000596457 TBC1D8O95759 1140 aa13.27□□□□□ -0.29
LIG1-211ENST00000596457 SNAPC2Q13487 334 aa13.27□□□□□ -0.29
LIG1-211ENST00000596457 SHROOM1Q2M3G4 852 aaPredicted RBP13.27□□□□□ -0.29
LIG1-211ENST00000596457 CERKLQ49MI3 558 aaPredicted RBP13.27□□□□□ -0.29
LIG1-211ENST00000596457 IFNL1Q8IU54 200 aa13.27□□□□□ -0.29
LIG1-211ENST00000596457 CFHR5Q9BXR6 569 aa13.27□□□□□ -0.29
LIG1-211ENST00000596457 HELLSQ9NRZ9 838 aa13.27□□□□□ -0.29
LIG1-211ENST00000596457 DIAPH3Q9NSV4 1193 aa13.27□□□□□ -0.29
LIG1-211ENST00000596457 PHIPQ8WWQ0 1821 aa13.27□□□□□ -0.29
LIG1-211ENST00000596457 TRIM75PA6NK02 468 aa13.26□□□□□ -0.29
LIG1-211ENST00000596457 LAMB1P07942 1786 aa13.26□□□□□ -0.29
LIG1-211ENST00000596457 CETPP11597 493 aa13.26□□□□□ -0.29
LIG1-211ENST00000596457 GSPT1P15170 499 aaKnown RBP13.26□□□□□ -0.29
LIG1-211ENST00000596457 JAG1P78504 1218 aa13.26□□□□□ -0.29
LIG1-211ENST00000596457 MCMDC2Q4G0Z9 681 aa13.26□□□□□ -0.29
LIG1-211ENST00000596457 C12orf60Q5U649 245 aa13.26□□□□□ -0.29
LIG1-211ENST00000596457 OTUD7BQ6GQQ9 843 aa13.26□□□□□ -0.29
LIG1-211ENST00000596457 CWC27Q6UX04 472 aaKnown RBP13.26□□□□□ -0.29
LIG1-211ENST00000596457 GADL1Q6ZQY3 521 aa13.26□□□□□ -0.29
LIG1-211ENST00000596457 METTL16Q86W50 562 aaKnown RBP13.26□□□□□ -0.29
LIG1-211ENST00000596457 IFNL3Q8IZI9 196 aa13.26□□□□□ -0.29
LIG1-211ENST00000596457 SLC44A5Q8NCS7 719 aa13.26□□□□□ -0.29
LIG1-211ENST00000596457 MS4A4AQ96JQ5 239 aa13.26□□□□□ -0.29
LIG1-211ENST00000596457 NACAP1Q9BZK3 213 aa13.26□□□□□ -0.29
LIG1-211ENST00000596457 EHD4Q9H223 541 aa13.26□□□□□ -0.29
LIG1-211ENST00000596457 CABP5Q9NP86 173 aa13.26□□□□□ -0.29
LIG1-211ENST00000596457 USP17L5A8MUK1 530 aa13.25□□□□□ -0.29
LIG1-211ENST00000596457 IGF2BP3O00425 579 aaKnown RBP eCLIP13.25□□□□□ -0.29
LIG1-211ENST00000596457 GH2P01242 217 aa13.25□□□□□ -0.29
LIG1-211ENST00000596457 SHMT1P34896 483 aa13.25□□□□□ -0.29
LIG1-211ENST00000596457 RAB3GAP1Q15042 981 aa13.25□□□□□ -0.29
LIG1-211ENST00000596457 ABCB5Q2M3G0 1257 aa13.25□□□□□ -0.29
LIG1-211ENST00000596457 TATDN1Q6P1N9 297 aa13.25□□□□□ -0.29
LIG1-211ENST00000596457 BRI3BPQ8WY22 251 aa13.25□□□□□ -0.29
LIG1-211ENST00000596457 PTPN18Q99952 460 aa13.25□□□□□ -0.29
LIG1-211ENST00000596457 NAPBQ9H115 298 aa13.25□□□□□ -0.29
LIG1-211ENST00000596457 AS3MTQ9HBK9 375 aa13.25□□□□□ -0.29
LIG1-211ENST00000596457 EPB41L4AQ9HCS5 686 aaPredicted RBP13.25□□□□□ -0.29
LIG1-211ENST00000596457 PPP4R2Q9NY27 417 aa13.25□□□□□ -0.29
LIG1-211ENST00000596457 ARPP21Q9UBL0 812 aaPredicted RBP13.25□□□□□ -0.29
LIG1-211ENST00000596457 AFG3L2Q9Y4W6 797 aa13.25□□□□□ -0.29
LIG1-211ENST00000596457 HIP1O00291 1037 aa13.24□□□□□ -0.29
LIG1-211ENST00000596457 DLL1O00548 723 aa13.24□□□□□ -0.29
LIG1-211ENST00000596457 CDK8P49336 464 aa13.24□□□□□ -0.29
LIG1-211ENST00000596457 SPP2Q13103 211 aa13.24□□□□□ -0.29
LIG1-211ENST00000596457 PKN2Q16513 984 aaKnown RBP13.24□□□□□ -0.29
LIG1-211ENST00000596457 VPS53Q5VIR6 699 aa13.24□□□□□ -0.29
LIG1-211ENST00000596457 GIMAP6Q6P9H5 292 aa13.24□□□□□ -0.29
LIG1-211ENST00000596457 SWAP70Q9UH65 585 aa13.24□□□□□ -0.29
LIG1-211ENST00000596457 ZBTB21Q9ULJ3 1066 aa13.24□□□□□ -0.29
LIG1-211ENST00000596457 TESPA1A2RU30 521 aaPredicted RBP13.23□□□□□ -0.29
LIG1-211ENST00000596457 BTBD19C9JJ37 291 aa13.23□□□□□ -0.29
LIG1-211ENST00000596457 CXCL11O14625 94 aa13.23□□□□□ -0.29
LIG1-211ENST00000596457 ASNSP08243 561 aa13.23□□□□□ -0.29
LIG1-211ENST00000596457 GABPAQ06546 454 aa13.23□□□□□ -0.29
LIG1-211ENST00000596457 SBK1Q52WX2 424 aa13.23□□□□□ -0.29
LIG1-211ENST00000596457 CTU1Q7Z7A3 348 aaKnown RBP13.23□□□□□ -0.29
LIG1-211ENST00000596457 ZNF589Q86UQ0 364 aaPredicted RBP13.23□□□□□ -0.29
LIG1-211ENST00000596457 FAM43AQ8N2R8 423 aa13.23□□□□□ -0.29
LIG1-211ENST00000596457 ZNF280CQ8ND82 737 aa13.23□□□□□ -0.29
LIG1-211ENST00000596457 R3HDMLQ9H3Y0 253 aa13.23□□□□□ -0.29
LIG1-211ENST00000596457 MKNK2Q9HBH9 465 aa13.23□□□□□ -0.29
LIG1-211ENST00000596457 KCNH4Q9UQ05 1017 aa13.23□□□□□ -0.29
LIG1-211ENST00000596457 CCDC171Q6TFL3 1326 aa13.22□□□□□ -0.29
LIG1-211ENST00000596457 PTPRFP10586 1907 aa13.22□□□□□ -0.29
LIG1-211ENST00000596457 AKR1B1P15121 316 aa13.22□□□□□ -0.29
LIG1-211ENST00000596457 MFAP1P55081 439 aaKnown RBP13.22□□□□□ -0.29
LIG1-211ENST00000596457 CTDSPL2Q05D32 466 aa13.22□□□□□ -0.29
LIG1-211ENST00000596457 SEPT2Q15019 361 aa13.22□□□□□ -0.29
LIG1-211ENST00000596457 TAF1CQ15572 869 aaPredicted RBP13.22□□□□□ -0.29
LIG1-211ENST00000596457 ZYXQ15942 572 aaKnown RBP13.22□□□□□ -0.29
LIG1-211ENST00000596457 HABP4Q5JVS0 413 aaKnown RBP13.22□□□□□ -0.29
LIG1-211ENST00000596457 C16orf86Q6ZW13 317 aa13.22□□□□□ -0.29
LIG1-211ENST00000596457 A0A0G2JLL6 359 aaPredicted RBP13.21□□□□□ -0.29
LIG1-211ENST00000596457 GPR25O00155 361 aa13.21□□□□□ -0.29
LIG1-211ENST00000596457 PDHXO00330 501 aa13.21□□□□□ -0.29
LIG1-211ENST00000596457 PRDM1O75626 825 aa13.21□□□□□ -0.29
LIG1-211ENST00000596457 HSPD1P10809 573 aaKnown RBP13.21□□□□□ -0.29
LIG1-211ENST00000596457 HMGCS2P54868 508 aa13.21□□□□□ -0.29
LIG1-211ENST00000596457 PPARAQ07869 468 aa13.21□□□□□ -0.29
LIG1-211ENST00000596457 MTMR2Q13614 643 aa13.21□□□□□ -0.29
LIG1-211ENST00000596457 ERICH6BQ5W0A0 696 aa13.21□□□□□ -0.29
LIG1-211ENST00000596457 FASTKD5Q7L8L6 764 aaKnown RBP13.21□□□□□ -0.29
LIG1-211ENST00000596457 PRRT2Q7Z6L0 340 aaPredicted RBP13.21□□□□□ -0.29
LIG1-211ENST00000596457 TICAM2Q86XR7 235 aa13.21□□□□□ -0.29
LIG1-211ENST00000596457 FEZ1Q99689 392 aa13.21□□□□□ -0.29
LIG1-211ENST00000596457 TBC1D2Q9BYX2 928 aa13.21□□□□□ -0.29
LIG1-211ENST00000596457 ZFYVE28Q9HCC9 887 aa13.21□□□□□ -0.29
LIG1-211ENST00000596457 GINM1Q9NU53 330 aa13.21□□□□□ -0.29
LIG1-211ENST00000596457 USP17L10C9JJH3 530 aa13.2□□□□□ -0.3
LIG1-211ENST00000596457 FOXP2O15409 715 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms