RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 STOX1Q6ZVD7 989 aa12.61□□□□□ -0.39
LIG1-210ENST00000596332 SCYL3Q8IZE3 742 aa12.61□□□□□ -0.39
LIG1-210ENST00000596332 STK11IPQ8N1F8 1099 aa12.61□□□□□ -0.39
LIG1-210ENST00000596332 KCNB2Q92953 911 aa12.61□□□□□ -0.39
LIG1-210ENST00000596332 MS4A4AQ96JQ5 239 aa12.61□□□□□ -0.39
LIG1-210ENST00000596332 NACAP1Q9BZK3 213 aa12.61□□□□□ -0.39
LIG1-210ENST00000596332 ELP3Q9H9T3 547 aa12.61□□□□□ -0.39
LIG1-210ENST00000596332 TAOK2Q9UL54 1235 aa12.61□□□□□ -0.39
LIG1-210ENST00000596332 IGKV6D-41A0A0C4DH26 115 aa12.6□□□□□ -0.39
LIG1-210ENST00000596332 PRDM1O75626 825 aa12.6□□□□□ -0.39
LIG1-210ENST00000596332 GDF11O95390 407 aa12.6□□□□□ -0.39
LIG1-210ENST00000596332 HAND2P61296 217 aa12.6□□□□□ -0.39
LIG1-210ENST00000596332 TTLL12Q14166 644 aaPredicted RBP12.6□□□□□ -0.39
LIG1-210ENST00000596332 SPRYD7Q5W111 196 aa12.6□□□□□ -0.39
LIG1-210ENST00000596332 SWAP70Q9UH65 585 aa12.6□□□□□ -0.39
LIG1-210ENST00000596332 ABT1Q9ULW3 272 aaKnown RBP12.6□□□□□ -0.39
LIG1-210ENST00000596332 AFG3L2Q9Y4W6 797 aa12.6□□□□□ -0.39
LIG1-210ENST00000596332 RBM8AQ9Y5S9 174 aaKnown RBP12.6□□□□□ -0.39
LIG1-210ENST00000596332 ORC4O43929 436 aa12.59□□□□□ -0.39
LIG1-210ENST00000596332 AOC2O75106 756 aa12.59□□□□□ -0.39
LIG1-210ENST00000596332 NOVP48745 357 aa12.59□□□□□ -0.39
LIG1-210ENST00000596332 CERKLQ49MI3 558 aaPredicted RBP12.59□□□□□ -0.39
LIG1-210ENST00000596332 ERO1BQ86YB8 467 aa12.59□□□□□ -0.39
LIG1-210ENST00000596332 RASEFQ8IZ41 740 aa12.59□□□□□ -0.39
LIG1-210ENST00000596332 CRACR2BQ8N4Y2 399 aaPredicted RBP12.59□□□□□ -0.39
LIG1-210ENST00000596332 STAG1Q8WVM7 1258 aa12.59□□□□□ -0.39
LIG1-210ENST00000596332 SLC10A4Q96EP9 437 aa12.59□□□□□ -0.39
LIG1-210ENST00000596332 WNK4Q96J92 1243 aa12.59□□□□□ -0.39
LIG1-210ENST00000596332 USP26Q9BXU7 913 aa12.59□□□□□ -0.39
LIG1-210ENST00000596332 IL17RBQ9NRM6 502 aa12.59□□□□□ -0.39
LIG1-210ENST00000596332 ZBTB21Q9ULJ3 1066 aa12.59□□□□□ -0.39
LIG1-210ENST00000596332 PHIPQ8WWQ0 1821 aa12.59□□□□□ -0.39
LIG1-210ENST00000596332 LAMB1P07942 1786 aa12.58□□□□□ -0.39
LIG1-210ENST00000596332 GREB1LQ9C091 1923 aaPredicted RBP12.58□□□□□ -0.39
LIG1-210ENST00000596332 A0A1W2PRG0 241 aa12.58□□□□□ -0.4
LIG1-210ENST00000596332 TESPA1A2RU30 521 aaPredicted RBP12.58□□□□□ -0.4
LIG1-210ENST00000596332 IRF6O14896 467 aa12.58□□□□□ -0.4
LIG1-210ENST00000596332 SLC27A2O14975 620 aa12.58□□□□□ -0.4
LIG1-210ENST00000596332 GH2P01242 217 aa12.58□□□□□ -0.4
LIG1-210ENST00000596332 ZNF157P51786 506 aaPredicted RBP12.58□□□□□ -0.4
LIG1-210ENST00000596332 PPATQ06203 517 aa12.58□□□□□ -0.4
LIG1-210ENST00000596332 SEPT2Q15019 361 aa12.58□□□□□ -0.4
LIG1-210ENST00000596332 CLEC10AQ8IUN9 316 aa12.58□□□□□ -0.4
LIG1-210ENST00000596332 OPTNQ96CV9 577 aa12.58□□□□□ -0.4
LIG1-210ENST00000596332 DDRGK1Q96HY6 314 aa12.58□□□□□ -0.4
LIG1-210ENST00000596332 CAPNS2Q96L46 248 aa12.58□□□□□ -0.4
LIG1-210ENST00000596332 PTPN18Q99952 460 aa12.58□□□□□ -0.4
LIG1-210ENST00000596332 KCNH4Q9UQ05 1017 aa12.58□□□□□ -0.4
LIG1-210ENST00000596332 U3KPZ7 1027 aaPredicted RBP12.58□□□□□ -0.4
LIG1-210ENST00000596332 NEDD4P46934 1319 aa12.58□□□□□ -0.4
LIG1-210ENST00000596332 ZNF213O14771 459 aa12.57□□□□□ -0.4
LIG1-210ENST00000596332 HOXD11P31277 338 aaPredicted RBP12.57□□□□□ -0.4
LIG1-210ENST00000596332 PPIL2Q13356 520 aa12.57□□□□□ -0.4
LIG1-210ENST00000596332 DGKZQ13574 1117 aa12.57□□□□□ -0.4
LIG1-210ENST00000596332 ABCB5Q2M3G0 1257 aa12.57□□□□□ -0.4
LIG1-210ENST00000596332 TSGA10IPQ3SY00 556 aa12.57□□□□□ -0.4
LIG1-210ENST00000596332 FAM47AQ5JRC9 791 aa12.57□□□□□ -0.4
LIG1-210ENST00000596332 KIAA1755Q5JYT7 1200 aa12.57□□□□□ -0.4
LIG1-210ENST00000596332 AKNAD1Q5T1N1 836 aa12.57□□□□□ -0.4
LIG1-210ENST00000596332 CREB3L3Q68CJ9 461 aa12.57□□□□□ -0.4
LIG1-210ENST00000596332 NEDD1Q8NHV4 660 aa12.57□□□□□ -0.4
LIG1-210ENST00000596332 ACER1Q8TDN7 264 aa12.57□□□□□ -0.4
LIG1-210ENST00000596332 CCDC17Q96LX7 622 aa12.57□□□□□ -0.4
LIG1-210ENST00000596332 WDR18Q9BV38 432 aa12.57□□□□□ -0.4
LIG1-210ENST00000596332 ANO2Q9NQ90 1003 aa12.57□□□□□ -0.4
LIG1-210ENST00000596332 ZHX2Q9Y6X8 837 aa12.57□□□□□ -0.4
LIG1-210ENST00000596332 WDR33Q9C0J8 1336 aaKnown RBP12.57□□□□□ -0.4
LIG1-210ENST00000596332 USP17L5A8MUK1 530 aa12.56□□□□□ -0.4
LIG1-210ENST00000596332 E7EWF7 191 aa12.56□□□□□ -0.4
LIG1-210ENST00000596332 ASNSP08243 561 aa12.56□□□□□ -0.4
LIG1-210ENST00000596332 ZBTB48P10074 688 aaPredicted RBP12.56□□□□□ -0.4
LIG1-210ENST00000596332 HSPA4P34932 840 aa12.56□□□□□ -0.4
LIG1-210ENST00000596332 KIF23Q02241 960 aaPredicted RBP12.56□□□□□ -0.4
LIG1-210ENST00000596332 RCSD1Q6JBY9 416 aa12.56□□□□□ -0.4
LIG1-210ENST00000596332 GPAT2Q6NUI2 795 aa12.56□□□□□ -0.4
LIG1-210ENST00000596332 CYB5R4Q7L1T6 521 aa12.56□□□□□ -0.4
LIG1-210ENST00000596332 CCDC102AQ96A19 550 aa12.56□□□□□ -0.4
LIG1-210ENST00000596332 OTUD5Q96G74 571 aa12.56□□□□□ -0.4
LIG1-210ENST00000596332 GINM1Q9NU53 330 aa12.56□□□□□ -0.4
LIG1-210ENST00000596332 CTNNA3Q9UI47 895 aa12.56□□□□□ -0.4
LIG1-210ENST00000596332 CSADQ9Y600 493 aa12.56□□□□□ -0.4
LIG1-210ENST00000596332 DOCK1Q14185 1865 aa12.56□□□□□ -0.4
LIG1-210ENST00000596332 PLIN4Q96Q06 1357 aa12.56□□□□□ -0.4
LIG1-210ENST00000596332 LAMA4Q16363 1823 aa12.55□□□□□ -0.4
LIG1-210ENST00000596332 THSD7BQ9C0I4 1608 aa12.55□□□□□ -0.4
LIG1-210ENST00000596332 EPB41L2O43491 1005 aaKnown RBP12.55□□□□□ -0.4
LIG1-210ENST00000596332 NMT2O60551 498 aa12.55□□□□□ -0.4
LIG1-210ENST00000596332 ECE1P42892 770 aa12.55□□□□□ -0.4
LIG1-210ENST00000596332 TM4SF4P48230 202 aa12.55□□□□□ -0.4
LIG1-210ENST00000596332 ANTXR2P58335 489 aa12.55□□□□□ -0.4
LIG1-210ENST00000596332 TFAP4Q01664 338 aa12.55□□□□□ -0.4
LIG1-210ENST00000596332 MKRN3Q13064 507 aaKnown RBP12.55□□□□□ -0.4
LIG1-210ENST00000596332 ADCK5Q3MIX3 580 aa12.55□□□□□ -0.4
LIG1-210ENST00000596332 SH3D19Q5HYK7 790 aa12.55□□□□□ -0.4
LIG1-210ENST00000596332 BRI3BPQ8WY22 251 aa12.55□□□□□ -0.4
LIG1-210ENST00000596332 TCP11L1Q9NUJ3 509 aa12.55□□□□□ -0.4
LIG1-210ENST00000596332 ZSWIM5Q9P217 1185 aa12.55□□□□□ -0.4
LIG1-210ENST00000596332 PCNTO95613 3336 aa12.54□□□□□ -0.4
LIG1-210ENST00000596332 ATAD5Q96QE3 1844 aa12.54□□□□□ -0.4
LIG1-210ENST00000596332 A0A0G2JLL6 359 aaPredicted RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms