RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 AMOTL1Q8IY63 956 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 TBC1D2Q9BYX2 928 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 GINM1Q9NU53 330 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 ZBTB21Q9ULJ3 1066 aa17.47■□□□□ 0.39
VRK3-206ENST00000594090 MYH8P13535 1937 aa17.46■□□□□ 0.39
VRK3-206ENST00000594090 CYP2D7A0A087X1C5 515 aa17.46■□□□□ 0.39
VRK3-206ENST00000594090 A0A0G2JLL6 359 aaPredicted RBP17.46■□□□□ 0.39
VRK3-206ENST00000594090 TRIM75PA6NK02 468 aa17.46■□□□□ 0.39
VRK3-206ENST00000594090 USP17L5A8MUK1 530 aa17.46■□□□□ 0.39
VRK3-206ENST00000594090 MOGSQ13724 837 aa17.46■□□□□ 0.39
VRK3-206ENST00000594090 CTR9Q6PD62 1173 aa17.46■□□□□ 0.39
VRK3-206ENST00000594090 PRRT2Q7Z6L0 340 aaPredicted RBP17.46■□□□□ 0.39
VRK3-206ENST00000594090 R3HDMLQ9H3Y0 253 aa17.46■□□□□ 0.39
VRK3-206ENST00000594090 EPB41L4AQ9HCS5 686 aaPredicted RBP17.46■□□□□ 0.39
VRK3-206ENST00000594090 ARPP21Q9UBL0 812 aaPredicted RBP17.46■□□□□ 0.39
VRK3-206ENST00000594090 TAOK2Q9UL54 1235 aa17.46■□□□□ 0.39
VRK3-206ENST00000594090 LOC285556D6RIA3 1793 aa17.46■□□□□ 0.38
VRK3-206ENST00000594090 A0A0D9SFI3 127 aa17.45■□□□□ 0.38
VRK3-206ENST00000594090 NEFLP07196 543 aa17.45■□□□□ 0.38
VRK3-206ENST00000594090 CRHR2Q13324 411 aa17.45■□□□□ 0.38
VRK3-206ENST00000594090 CERKLQ49MI3 558 aaPredicted RBP17.45■□□□□ 0.38
VRK3-206ENST00000594090 CCDC129Q6ZRS4 1044 aa17.45■□□□□ 0.38
VRK3-206ENST00000594090 CENPQQ7L2Z9 268 aaPredicted RBP17.45■□□□□ 0.38
VRK3-206ENST00000594090 SLC44A5Q8NCS7 719 aa17.45■□□□□ 0.38
VRK3-206ENST00000594090 DYNLL2Q96FJ2 89 aa17.45■□□□□ 0.38
VRK3-206ENST00000594090 FAM227BQ96M60 508 aa17.45■□□□□ 0.38
VRK3-206ENST00000594090 AS3MTQ9HBK9 375 aa17.45■□□□□ 0.38
VRK3-206ENST00000594090 ZCCHC17Q9NP64 241 aaKnown RBP17.45■□□□□ 0.38
VRK3-206ENST00000594090 HELLSQ9NRZ9 838 aa17.45■□□□□ 0.38
VRK3-206ENST00000594090 CASP8AP2Q9UKL3 1982 aa17.44■□□□□ 0.38
VRK3-206ENST00000594090 SMIM22K7EJ46 135 aa17.44■□□□□ 0.38
VRK3-206ENST00000594090 GH2P01242 217 aa17.44■□□□□ 0.38
VRK3-206ENST00000594090 SBK1Q52WX2 424 aa17.44■□□□□ 0.38
VRK3-206ENST00000594090 NOM1Q5C9Z4 860 aaKnown RBP17.44■□□□□ 0.38
VRK3-206ENST00000594090 TTC22Q5TAA0 569 aa17.44■□□□□ 0.38
VRK3-206ENST00000594090 ANKRD23Q86SG2 305 aa17.44■□□□□ 0.38
VRK3-206ENST00000594090 ZNF280CQ8ND82 737 aa17.44■□□□□ 0.38
VRK3-206ENST00000594090 SWAP70Q9UH65 585 aa17.44■□□□□ 0.38
VRK3-206ENST00000594090 ROBO3Q96MS0 1386 aa17.43■□□□□ 0.38
VRK3-206ENST00000594090 PATL2C9JE40 543 aaKnown RBP17.43■□□□□ 0.38
VRK3-206ENST00000594090 GPR25O00155 361 aa17.43■□□□□ 0.38
VRK3-206ENST00000594090 APPP05067 770 aa17.43■□□□□ 0.38
VRK3-206ENST00000594090 GSPT1P15170 499 aaKnown RBP17.43■□□□□ 0.38
VRK3-206ENST00000594090 SDSP20132 328 aa17.43■□□□□ 0.38
VRK3-206ENST00000594090 TDO2P48775 406 aa17.43■□□□□ 0.38
VRK3-206ENST00000594090 SPP2Q13103 211 aa17.43■□□□□ 0.38
VRK3-206ENST00000594090 NMIQ13287 307 aaPredicted RBP17.43■□□□□ 0.38
VRK3-206ENST00000594090 TAF1CQ15572 869 aaPredicted RBP17.43■□□□□ 0.38
VRK3-206ENST00000594090 ABCB5Q2M3G0 1257 aa17.43■□□□□ 0.38
VRK3-206ENST00000594090 C16orf86Q6ZW13 317 aa17.43■□□□□ 0.38
VRK3-206ENST00000594090 FASTKD5Q7L8L6 764 aaKnown RBP17.43■□□□□ 0.38
VRK3-206ENST00000594090 WDR18Q9BV38 432 aa17.43■□□□□ 0.38
VRK3-206ENST00000594090 FOXP2O15409 715 aa17.42■□□□□ 0.38
VRK3-206ENST00000594090 GPAT2Q6NUI2 795 aa17.42■□□□□ 0.38
VRK3-206ENST00000594090 GADL1Q6ZQY3 521 aa17.42■□□□□ 0.38
VRK3-206ENST00000594090 ZNF296Q8WUU4 475 aaPredicted RBP17.42■□□□□ 0.38
VRK3-206ENST00000594090 NACAP1Q9BZK3 213 aa17.42■□□□□ 0.38
VRK3-206ENST00000594090 PDHXO00330 501 aa17.41■□□□□ 0.38
VRK3-206ENST00000594090 CDK8P49336 464 aa17.41■□□□□ 0.38
VRK3-206ENST00000594090 MCMDC2Q4G0Z9 681 aa17.41■□□□□ 0.38
VRK3-206ENST00000594090 IFNL3Q8IZI9 196 aa17.41■□□□□ 0.38
VRK3-206ENST00000594090 ZFYVE28Q9HCC9 887 aa17.41■□□□□ 0.38
VRK3-206ENST00000594090 CABP5Q9NP86 173 aa17.41■□□□□ 0.38
VRK3-206ENST00000594090 MINDY4BA8MYZ0 360 aa17.4■□□□□ 0.38
VRK3-206ENST00000594090 MTMR2Q13614 643 aa17.4■□□□□ 0.38
VRK3-206ENST00000594090 RAB3GAP1Q15042 981 aa17.4■□□□□ 0.38
VRK3-206ENST00000594090 SH3D19Q5HYK7 790 aa17.4■□□□□ 0.38
VRK3-206ENST00000594090 ZNF589Q86UQ0 364 aaPredicted RBP17.4■□□□□ 0.38
VRK3-206ENST00000594090 PROCA1Q8NCQ7 364 aaPredicted RBP17.4■□□□□ 0.38
VRK3-206ENST00000594090 NAPBQ9H115 298 aa17.4■□□□□ 0.38
VRK3-206ENST00000594090 HIP1O00291 1037 aa17.39■□□□□ 0.38
VRK3-206ENST00000594090 MPHOSPH10O00566 681 aaKnown RBP17.39■□□□□ 0.38
VRK3-206ENST00000594090 GUCY1A2P33402 732 aa17.39■□□□□ 0.38
VRK3-206ENST00000594090 HMGCS2P54868 508 aa17.39■□□□□ 0.38
VRK3-206ENST00000594090 BACE1P56817 501 aa17.39■□□□□ 0.38
VRK3-206ENST00000594090 DGKZQ13574 1117 aa17.39■□□□□ 0.38
VRK3-206ENST00000594090 VPS53Q5VIR6 699 aa17.39■□□□□ 0.38
VRK3-206ENST00000594090 CCDC136Q96JN2 1154 aa17.39■□□□□ 0.38
VRK3-206ENST00000594090 DIAPH3Q9NSV4 1193 aa17.39■□□□□ 0.38
VRK3-206ENST00000594090 AGTPBP1Q9UPW5 1226 aa17.39■□□□□ 0.38
VRK3-206ENST00000594090 CCDC171Q6TFL3 1326 aa17.39■□□□□ 0.37
VRK3-206ENST00000594090 USP17L10C9JJH3 530 aa17.38■□□□□ 0.37
VRK3-206ENST00000594090 FKTNO75072 461 aa17.38■□□□□ 0.37
VRK3-206ENST00000594090 SEPT2Q15019 361 aa17.38■□□□□ 0.37
VRK3-206ENST00000594090 TMEM179Q6ZVK1 233 aa17.38■□□□□ 0.37
VRK3-206ENST00000594090 TNS4Q8IZW8 715 aa17.38■□□□□ 0.37
VRK3-206ENST00000594090 CCDC17Q96LX7 622 aa17.38■□□□□ 0.37
VRK3-206ENST00000594090 PARK7Q99497 189 aaKnown RBP17.38■□□□□ 0.37
VRK3-206ENST00000594090 SLC45A1Q9Y2W3 748 aa17.38■□□□□ 0.37
VRK3-206ENST00000594090 ADGRA2Q96PE1 1338 aa17.38■□□□□ 0.37
VRK3-206ENST00000594090 GREB1LQ9C091 1923 aaPredicted RBP17.38■□□□□ 0.37
VRK3-206ENST00000594090 C19orf81C9J6K1 198 aa17.38■□□□□ 0.37
VRK3-206ENST00000594090 TLR2O60603 784 aa17.38■□□□□ 0.37
VRK3-206ENST00000594090 AKR1B1P15121 316 aa17.38■□□□□ 0.37
VRK3-206ENST00000594090 TREML2Q5T2D2 321 aa17.38■□□□□ 0.37
VRK3-206ENST00000594090 CWC27Q6UX04 472 aaKnown RBP17.38■□□□□ 0.37
VRK3-206ENST00000594090 STK11IPQ8N1F8 1099 aa17.38■□□□□ 0.37
VRK3-206ENST00000594090 PPARAQ07869 468 aa17.37■□□□□ 0.37
VRK3-206ENST00000594090 TMOD4Q9NZQ9 345 aa17.37■□□□□ 0.37
VRK3-206ENST00000594090 CYP2C8P10632 490 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms