RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 BSNDQ8WZ55 320 aa7.54□□□□□ -1.2
SMAD4-208ENST00000589706 MKL1Q969V6 931 aa7.54□□□□□ -1.2
SMAD4-208ENST00000589706 KIFC2Q96AC6 838 aa7.54□□□□□ -1.2
SMAD4-208ENST00000589706 MRFAP1L1Q96HT8 127 aa7.54□□□□□ -1.2
SMAD4-208ENST00000589706 TRERF1Q96PN7 1200 aa7.54□□□□□ -1.2
SMAD4-208ENST00000589706 SRRTQ9BXP5 876 aaKnown RBP7.54□□□□□ -1.2
SMAD4-208ENST00000589706 UBE2OQ9C0C9 1292 aaKnown RBP7.54□□□□□ -1.2
SMAD4-208ENST00000589706 CLEC4MQ9H2X3 399 aaPredicted RBP7.54□□□□□ -1.2
SMAD4-208ENST00000589706 SAMM50Q9Y512 469 aa7.54□□□□□ -1.2
SMAD4-208ENST00000589706 TNS1Q9HBL0 1735 aaKnown RBP7.54□□□□□ -1.2
SMAD4-208ENST00000589706 PXDNQ92626 1479 aa7.54□□□□□ -1.2
SMAD4-208ENST00000589706 CHD4Q14839 1912 aa7.54□□□□□ -1.2
SMAD4-208ENST00000589706 PPM1GO15355 546 aaPredicted RBP7.53□□□□□ -1.2
SMAD4-208ENST00000589706 LMNB1P20700 586 aa7.53□□□□□ -1.2
SMAD4-208ENST00000589706 TBC1D8BQ0IIM8 1120 aa7.53□□□□□ -1.2
SMAD4-208ENST00000589706 CEP135Q66GS9 1140 aa7.53□□□□□ -1.2
SMAD4-208ENST00000589706 MIR1-1HGQ9H1L0 117 aa7.53□□□□□ -1.2
SMAD4-208ENST00000589706 SIRPGQ9P1W8 387 aa7.53□□□□□ -1.2
SMAD4-208ENST00000589706 PCDHB5Q9Y5E4 795 aa7.53□□□□□ -1.2
SMAD4-208ENST00000589706 PARD3Q8TEW0 1356 aa7.52□□□□□ -1.21
SMAD4-208ENST00000589706 TLR3O15455 904 aaKnown RBP7.52□□□□□ -1.21
SMAD4-208ENST00000589706 KLF4O43474 513 aa7.52□□□□□ -1.21
SMAD4-208ENST00000589706 F13A1P00488 732 aa7.52□□□□□ -1.21
SMAD4-208ENST00000589706 CDK11BP21127 795 aaKnown RBP7.52□□□□□ -1.21
SMAD4-208ENST00000589706 BMP6P22004 513 aa7.52□□□□□ -1.21
SMAD4-208ENST00000589706 PCDH1Q08174 1060 aa7.52□□□□□ -1.21
SMAD4-208ENST00000589706 RAB33AQ14088 237 aa7.52□□□□□ -1.21
SMAD4-208ENST00000589706 SEZ6Q53EL9 994 aa7.52□□□□□ -1.21
SMAD4-208ENST00000589706 ZNF468Q5VIY5 522 aaPredicted RBP7.52□□□□□ -1.21
SMAD4-208ENST00000589706 BNC2Q6ZN30 1099 aaPredicted RBP7.52□□□□□ -1.21
SMAD4-208ENST00000589706 ZNF662Q6ZS27 426 aa7.52□□□□□ -1.21
SMAD4-208ENST00000589706 FBXO27Q8NI29 283 aa7.52□□□□□ -1.21
SMAD4-208ENST00000589706 GATAD2BQ8WXI9 593 aa7.52□□□□□ -1.21
SMAD4-208ENST00000589706 ANAPC16Q96DE5 110 aa7.52□□□□□ -1.21
SMAD4-208ENST00000589706 LRRC3Q9BY71 257 aa7.52□□□□□ -1.21
SMAD4-208ENST00000589706 TRIM55Q9BYV6 548 aa7.52□□□□□ -1.21
SMAD4-208ENST00000589706 PRKAG3Q9UGI9 489 aa7.52□□□□□ -1.21
SMAD4-208ENST00000589706 CYP8B1Q9UNU6 501 aa7.52□□□□□ -1.21
SMAD4-208ENST00000589706 PTPN23Q9H3S7 1636 aa7.52□□□□□ -1.21
SMAD4-208ENST00000589706 NRXN3Q9Y4C0 1643 aa7.52□□□□□ -1.21
SMAD4-208ENST00000589706 MYOM3Q5VTT5 1437 aa7.52□□□□□ -1.21
SMAD4-208ENST00000589706 GPR25O00155 361 aa7.51□□□□□ -1.21
SMAD4-208ENST00000589706 U2SURPO15042 1029 aaKnown RBP7.51□□□□□ -1.21
SMAD4-208ENST00000589706 SIN3BO75182 1162 aa7.51□□□□□ -1.21
SMAD4-208ENST00000589706 CPB1P15086 417 aa7.51□□□□□ -1.21
SMAD4-208ENST00000589706 NME2P22392 152 aa7.51□□□□□ -1.21
SMAD4-208ENST00000589706 FAM35AQ86V20 835 aa7.51□□□□□ -1.21
SMAD4-208ENST00000589706 JAZF1Q86VZ6 243 aa7.51□□□□□ -1.21
SMAD4-208ENST00000589706 NLGN1Q8N2Q7 840 aa7.51□□□□□ -1.21
SMAD4-208ENST00000589706 MICALL1Q8N3F8 863 aa7.51□□□□□ -1.21
SMAD4-208ENST00000589706 JARID2Q92833 1246 aaPredicted RBP7.51□□□□□ -1.21
SMAD4-208ENST00000589706 PLD4Q96BZ4 506 aa7.51□□□□□ -1.21
SMAD4-208ENST00000589706 TRIM47Q96LD4 638 aa7.51□□□□□ -1.21
SMAD4-208ENST00000589706 R3HCC1Q9Y3T6 440 aaKnown RBP7.51□□□□□ -1.21
SMAD4-208ENST00000589706 USP32Q8NFA0 1604 aa7.51□□□□□ -1.21
SMAD4-208ENST00000589706 ABCC5O15440 1437 aa7.51□□□□□ -1.21
SMAD4-208ENST00000589706 SPATA31A3Q5VYP0 1347 aa7.51□□□□□ -1.21
SMAD4-208ENST00000589706 ADGRL2O95490 1459 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 NWD2Q9ULI1 1742 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 LRPPRCP42704 1394 aaKnown RBP7.5□□□□□ -1.21
SMAD4-208ENST00000589706 FAM221AA4D161 298 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 CDC14CA4D256 554 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 FAM83GA6ND36 823 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 C2CD2LO14523 706 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 B3GALT4O96024 378 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 MPP2Q14168 576 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 LRRC14Q15048 493 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 ZNF423Q2M1K9 1284 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 RASIP1Q5U651 963 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 EGFLAMQ63HQ2 1017 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 CCDC81Q6ZN84 652 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 HNRNPLLQ8WVV9 542 aaKnown RBP7.5□□□□□ -1.21
SMAD4-208ENST00000589706 SHDQ96IW2 340 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 SYT17Q9BSW7 474 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 PPT2Q9UMR5 302 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 SOX13Q9UN79 622 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 PLCH1Q4KWH8 1693 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 RREB1Q92766 1687 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 ADGRB2O60241 1585 aa7.5□□□□□ -1.21
SMAD4-208ENST00000589706 NUP188Q5SRE5 1749 aa7.49□□□□□ -1.21
SMAD4-208ENST00000589706 SBNO2Q9Y2G9 1366 aa7.49□□□□□ -1.21
SMAD4-208ENST00000589706 BMP4P12644 408 aa7.49□□□□□ -1.21
SMAD4-208ENST00000589706 PTPRAP18433 802 aa7.49□□□□□ -1.21
SMAD4-208ENST00000589706 MCM4P33991 863 aa7.49□□□□□ -1.21
SMAD4-208ENST00000589706 PCBP4P57723 403 aaKnown RBP7.49□□□□□ -1.21
SMAD4-208ENST00000589706 LAPTM4AQ15012 233 aa7.49□□□□□ -1.21
SMAD4-208ENST00000589706 CWF19L2Q2TBE0 894 aaKnown RBP7.49□□□□□ -1.21
SMAD4-208ENST00000589706 VN1R5Q7Z5H4 357 aa7.49□□□□□ -1.21
SMAD4-208ENST00000589706 SULF2Q8IWU5 870 aa7.49□□□□□ -1.21
SMAD4-208ENST00000589706 VWA5B2Q8N398 1253 aa7.49□□□□□ -1.21
SMAD4-208ENST00000589706 TNFRSF25Q93038 417 aa7.49□□□□□ -1.21
SMAD4-208ENST00000589706 SRPK1Q96SB4 655 aaKnown RBP7.49□□□□□ -1.21
SMAD4-208ENST00000589706 ADAM19Q9H013 955 aa7.49□□□□□ -1.21
SMAD4-208ENST00000589706 SLC6A14Q9UN76 642 aa7.49□□□□□ -1.21
SMAD4-208ENST00000589706 CENPJQ9HC77 1338 aaPredicted RBP7.49□□□□□ -1.21
SMAD4-208ENST00000589706 SMAD7O15105 426 aaKnown RBP7.48□□□□□ -1.21
SMAD4-208ENST00000589706 CILPO75339 1184 aa7.48□□□□□ -1.21
SMAD4-208ENST00000589706 ARNTP27540 789 aa7.48□□□□□ -1.21
SMAD4-208ENST00000589706 ZNF165P49910 485 aa7.48□□□□□ -1.21
SMAD4-208ENST00000589706 EIF6P56537 245 aaKnown RBP7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms