RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 MIR1-1HGQ9H1L0 117 aa4.77□□□□□ -1.65
ZNF540-207ENST00000589285 SOX17Q9H6I2 414 aaPredicted RBP4.77□□□□□ -1.65
ZNF540-207ENST00000589285 SSU72Q9NP77 194 aaKnown RBP4.77□□□□□ -1.65
ZNF540-207ENST00000589285 POLR3KQ9Y2Y1 108 aaPredicted RBP4.77□□□□□ -1.65
ZNF540-207ENST00000589285 EPRSP07814 1512 aaKnown RBP4.76□□□□□ -1.65
ZNF540-207ENST00000589285 FAM95CA0A1B0GW59 222 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 WDR64B1ANS9 1081 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 ADAM23O75077 832 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 AP3B2Q13367 1082 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.76□□□□□ -1.65
ZNF540-207ENST00000589285 MAP4K3Q8IVH8 894 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 ANKRD24Q8TF21 1146 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 TBC1D32Q96NH3 1257 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 TMEM74Q96NL1 305 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 CEP44Q9C0F1 390 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 C1GALT1Q9NS00 363 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 PPM1HQ9ULR3 514 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 BCORL1Q5H9F3 1711 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 NEO1Q92859 1461 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 WASH4PA8MWX3 477 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 PRR33A8MZF0 331 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 F13BP05160 661 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 LMNB1P20700 586 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 GRK4P32298 578 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 EIF4A3P38919 411 aaKnown RBP4.76□□□□□ -1.65
ZNF540-207ENST00000589285 ID3Q02535 119 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 ERMP1Q7Z2K6 904 aa4.76□□□□□ -1.65
ZNF540-207ENST00000589285 SMYD4Q8IYR2 804 aaPredicted RBP4.76□□□□□ -1.65
ZNF540-207ENST00000589285 EAF1Q96JC9 268 aaPredicted RBP4.76□□□□□ -1.65
ZNF540-207ENST00000589285 SRA1Q9HD15 236 aaKnown RBP4.76□□□□□ -1.65
ZNF540-207ENST00000589285 FAM221AA4D161 298 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 RAPGEF3O95398 923 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 GARTP22102 1010 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 RAD51AP2Q09MP3 1159 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 RPS26P11Q5JNZ5 115 aaPredicted RBP4.75□□□□□ -1.65
ZNF540-207ENST00000589285 SNAP47Q5SQN1 464 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 RUFY4Q6ZNE9 571 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 HS2ST1Q7LGA3 356 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 AFAP1Q8N556 730 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 ACSS3Q9H6R3 686 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 PIDD1Q9HB75 910 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 LRRC4CQ9HCJ2 640 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 BRMS1Q9HCU9 246 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 ASXL2Q76L83 1435 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 TSPOAP1O95153 1857 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 SMG8Q8ND04 991 aaKnown RBP4.75□□□□□ -1.65
ZNF540-207ENST00000589285 SUGCTQ9HAC7 445 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 NUP153P49790 1475 aaKnown RBP4.75□□□□□ -1.65
ZNF540-207ENST00000589285 MAGI2Q86UL8 1455 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 ADAMTS4O75173 837 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 ERCC3P19447 782 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 MCM4P33991 863 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 KIF4BQ2VIQ3 1234 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 FBXW10Q5XX13 1052 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 ANKRD34AQ69YU3 496 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 SHKBP1Q8TBC3 707 aa4.75□□□□□ -1.65
ZNF540-207ENST00000589285 MROH2AA6NES4 1674 aa4.74□□□□□ -1.65
ZNF540-207ENST00000589285 GFRA2O00451 464 aa4.74□□□□□ -1.65
ZNF540-207ENST00000589285 DHX15O43143 795 aaKnown RBP4.74□□□□□ -1.65
ZNF540-207ENST00000589285 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.74□□□□□ -1.65
ZNF540-207ENST00000589285 MRVI1Q9Y6F6 885 aa4.74□□□□□ -1.65
ZNF540-207ENST00000589285 CCNB3Q8WWL7 1395 aa4.74□□□□□ -1.65
ZNF540-207ENST00000589285 EFCAB5A4FU69 1503 aa4.74□□□□□ -1.65
ZNF540-207ENST00000589285 ITIH2P19823 946 aa4.74□□□□□ -1.65
ZNF540-207ENST00000589285 SSTR4P31391 388 aa4.74□□□□□ -1.65
ZNF540-207ENST00000589285 PRAMEF13Q5VWM6 474 aa4.74□□□□□ -1.65
ZNF540-207ENST00000589285 GATA6Q92908 595 aa4.74□□□□□ -1.65
ZNF540-207ENST00000589285 SPON2Q9BUD6 331 aa4.74□□□□□ -1.65
ZNF540-207ENST00000589285 MINPP1Q9UNW1 487 aa4.74□□□□□ -1.65
ZNF540-207ENST00000589285 ATP10BO94823 1461 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 CHURC1-FNTBB4DL54 471 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 ZNF512BQ96KM6 892 aaPredicted RBP4.73□□□□□ -1.65
ZNF540-207ENST00000589285 ARHGEF40Q8TER5 1519 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 CASKIN1Q8WXD9 1431 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 GIPC1O14908 333 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 SLFN14P0C7P3 912 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 FAM87AP0C7U9 286 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 CLCQ05315 142 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 RING1Q06587 406 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 APOBRQ0VD83 1088 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 NFIAQ12857 509 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 PAK2Q13177 524 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 ZBTB37Q5TC79 503 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 SV2BQ7L1I2 683 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 CACTIN-AS1Q8N1I8 211 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 ACSF2Q96CM8 615 aaPredicted RBP4.73□□□□□ -1.65
ZNF540-207ENST00000589285 CEP41Q9BYV8 373 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 CACNA2D2Q9NY47 1150 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 TTC37Q6PGP7 1564 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 LRRC9Q6ZRR7 1453 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 RICTORQ6R327 1708 aa4.73□□□□□ -1.65
ZNF540-207ENST00000589285 PGRP06401 933 aa4.72□□□□□ -1.65
ZNF540-207ENST00000589285 REC114Q7Z4M0 266 aa4.72□□□□□ -1.65
ZNF540-207ENST00000589285 NOC4LQ9BVI4 516 aaKnown RBP4.72□□□□□ -1.65
ZNF540-207ENST00000589285 PRKAG2Q9UGJ0 569 aa4.72□□□□□ -1.65
ZNF540-207ENST00000589285 MEGF11A6BM72 1044 aa4.72□□□□□ -1.65
ZNF540-207ENST00000589285 PLCG1P19174 1290 aa4.72□□□□□ -1.65
ZNF540-207ENST00000589285 ARMCX6Q7L4S7 300 aa4.72□□□□□ -1.65
ZNF540-207ENST00000589285 RELL1Q8IUW5 271 aa4.72□□□□□ -1.65
ZNF540-207ENST00000589285 TOP6BLQ8N6T0 577 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms