RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 AAMPQ13685 434 aa5.16□□□□□ -1.58
LIG3-211ENST00000588713 TSR1Q2NL82 804 aaKnown RBP5.16□□□□□ -1.58
LIG3-211ENST00000588713 KRT40Q6A162 431 aa5.16□□□□□ -1.58
LIG3-211ENST00000588713 Q6ZNB5 142 aa5.16□□□□□ -1.58
LIG3-211ENST00000588713 ANKRD13CQ8N6S4 541 aa5.16□□□□□ -1.58
LIG3-211ENST00000588713 SMCR8Q8TEV9 937 aaPredicted RBP5.16□□□□□ -1.58
LIG3-211ENST00000588713 RMDN1Q96DB5 314 aa5.16□□□□□ -1.58
LIG3-211ENST00000588713 WRNIP1Q96S55 665 aa5.16□□□□□ -1.58
LIG3-211ENST00000588713 POLR3GLQ9BT43 218 aa5.16□□□□□ -1.58
LIG3-211ENST00000588713 SLC28A3Q9HAS3 691 aa5.16□□□□□ -1.58
LIG3-211ENST00000588713 TRMT112Q9UI30 125 aaKnown RBP5.16□□□□□ -1.58
LIG3-211ENST00000588713 UNC79Q9P2D8 2635 aa5.16□□□□□ -1.58
LIG3-211ENST00000588713 ZFHX2Q9C0A1 2572 aaPredicted RBP5.15□□□□□ -1.58
LIG3-211ENST00000588713 DNAH12Q6ZR08 3092 aa5.15□□□□□ -1.58
LIG3-211ENST00000588713 ANKRD36CQ5JPF3 1778 aa5.15□□□□□ -1.58
LIG3-211ENST00000588713 FSD2A1L4K1 749 aa5.15□□□□□ -1.59
LIG3-211ENST00000588713 PRR23AA6NEV1 266 aa5.15□□□□□ -1.59
LIG3-211ENST00000588713 TCP10L2B9ZVM9 353 aa5.15□□□□□ -1.59
LIG3-211ENST00000588713 RFXAPO00287 272 aa5.15□□□□□ -1.59
LIG3-211ENST00000588713 IL9P15248 144 aa5.15□□□□□ -1.59
LIG3-211ENST00000588713 FPGSQ05932 587 aa5.15□□□□□ -1.59
LIG3-211ENST00000588713 RAB30Q15771 203 aa5.15□□□□□ -1.59
LIG3-211ENST00000588713 CFAP100Q494V2 611 aa5.15□□□□□ -1.59
LIG3-211ENST00000588713 STRIP1Q5VSL9 837 aa5.15□□□□□ -1.59
LIG3-211ENST00000588713 DUSP27Q5VZP5 1158 aa5.15□□□□□ -1.59
LIG3-211ENST00000588713 TTLL5Q6EMB2 1281 aa5.15□□□□□ -1.59
LIG3-211ENST00000588713 GIGYF2Q6Y7W6 1299 aaKnown RBP5.15□□□□□ -1.59
LIG3-211ENST00000588713 FAM178BQ8IXR5 827 aa5.15□□□□□ -1.59
LIG3-211ENST00000588713 PRMT6Q96LA8 375 aaPredicted RBP5.15□□□□□ -1.59
LIG3-211ENST00000588713 TESK2Q96S53 571 aa5.15□□□□□ -1.59
LIG3-211ENST00000588713 PRRX2Q99811 253 aa5.15□□□□□ -1.59
LIG3-211ENST00000588713 RRAGDQ9NQL2 400 aaPredicted RBP5.15□□□□□ -1.59
LIG3-211ENST00000588713 SH2B1Q9NRF2 756 aaPredicted RBP5.15□□□□□ -1.59
LIG3-211ENST00000588713 PODXL2Q9NZ53 605 aa5.15□□□□□ -1.59
LIG3-211ENST00000588713 PSME4Q14997 1843 aa5.15□□□□□ -1.59
LIG3-211ENST00000588713 SH3TC1Q8TE82 1336 aa5.15□□□□□ -1.59
LIG3-211ENST00000588713 A0A0G2JMZ2 1700 aa5.14□□□□□ -1.59
LIG3-211ENST00000588713 SPDYE16A6NNV3 312 aaPredicted RBP5.14□□□□□ -1.59
LIG3-211ENST00000588713 GNAT3A8MTJ3 354 aa5.14□□□□□ -1.59
LIG3-211ENST00000588713 H0Y858 1186 aa5.14□□□□□ -1.59
LIG3-211ENST00000588713 SMAPO00193 183 aa5.14□□□□□ -1.59
LIG3-211ENST00000588713 PER1O15534 1290 aaPredicted RBP5.14□□□□□ -1.59
LIG3-211ENST00000588713 TPM2P07951 284 aa5.14□□□□□ -1.59
LIG3-211ENST00000588713 RAG1P15918 1043 aa5.14□□□□□ -1.59
LIG3-211ENST00000588713 IL13P35225 146 aa5.14□□□□□ -1.59
LIG3-211ENST00000588713 RPS8P62241 208 aaKnown RBP5.14□□□□□ -1.59
LIG3-211ENST00000588713 GTF2IP78347 998 aa5.14□□□□□ -1.59
LIG3-211ENST00000588713 CACNB2Q08289 660 aaPredicted RBP5.14□□□□□ -1.59
LIG3-211ENST00000588713 TNFAIP1Q13829 316 aa5.14□□□□□ -1.59
LIG3-211ENST00000588713 MAP3K21Q5TCX8 1036 aa5.14□□□□□ -1.59
LIG3-211ENST00000588713 PPP2R2DQ66LE6 453 aa5.14□□□□□ -1.59
LIG3-211ENST00000588713 SUGP1Q8IWZ8 645 aaKnown RBP5.14□□□□□ -1.59
LIG3-211ENST00000588713 ADSSL1Q8N142 457 aa5.14□□□□□ -1.59
LIG3-211ENST00000588713 CDCA7LQ96GN5 454 aa5.14□□□□□ -1.59
LIG3-211ENST00000588713 CHAMP1Q96JM3 812 aa5.14□□□□□ -1.59
LIG3-211ENST00000588713 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.14□□□□□ -1.59
LIG3-211ENST00000588713 TMEM39BQ9GZU3 492 aa5.14□□□□□ -1.59
LIG3-211ENST00000588713 PNNQ9H307 717 aaKnown RBP5.14□□□□□ -1.59
LIG3-211ENST00000588713 CERS4Q9HA82 394 aa5.14□□□□□ -1.59
LIG3-211ENST00000588713 TLR9Q9NR96 1032 aa5.14□□□□□ -1.59
LIG3-211ENST00000588713 YBX2Q9Y2T7 364 aaKnown RBP5.14□□□□□ -1.59
LIG3-211ENST00000588713 MTCH2Q9Y6C9 303 aa5.14□□□□□ -1.59
LIG3-211ENST00000588713 PTPRZ1P23471 2315 aaPredicted RBP5.14□□□□□ -1.59
LIG3-211ENST00000588713 PLXNA1Q9UIW2 1896 aa5.13□□□□□ -1.59
LIG3-211ENST00000588713 ZNF318Q5VUA4 2279 aa5.13□□□□□ -1.59
LIG3-211ENST00000588713 GOLGA6L3A6NEY3 463 aa5.13□□□□□ -1.59
LIG3-211ENST00000588713 GRXCR2A6NFK2 248 aa5.13□□□□□ -1.59
LIG3-211ENST00000588713 PLIN1O60240 522 aa5.13□□□□□ -1.59
LIG3-211ENST00000588713 KDM4AO75164 1064 aa5.13□□□□□ -1.59
LIG3-211ENST00000588713 HSP90AA1P07900 732 aaKnown RBP5.13□□□□□ -1.59
LIG3-211ENST00000588713 ZKSCAN1P17029 563 aaPredicted RBP5.13□□□□□ -1.59
LIG3-211ENST00000588713 PTMSP20962 102 aa5.13□□□□□ -1.59
LIG3-211ENST00000588713 MMP14P50281 582 aa5.13□□□□□ -1.59
LIG3-211ENST00000588713 PPATQ06203 517 aa5.13□□□□□ -1.59
LIG3-211ENST00000588713 MOGSQ13724 837 aa5.13□□□□□ -1.59
LIG3-211ENST00000588713 PDIA6Q15084 440 aa5.13□□□□□ -1.59
LIG3-211ENST00000588713 GJC2Q5T442 439 aaPredicted RBP5.13□□□□□ -1.59
LIG3-211ENST00000588713 GPAT2Q6NUI2 795 aa5.13□□□□□ -1.59
LIG3-211ENST00000588713 SLC39A5Q6ZMH5 540 aa5.13□□□□□ -1.59
LIG3-211ENST00000588713 PBXIP1Q96AQ6 731 aa5.13□□□□□ -1.59
LIG3-211ENST00000588713 TEPSINQ96N21 525 aa5.13□□□□□ -1.59
LIG3-211ENST00000588713 ANTXR1Q9H6X2 564 aa5.13□□□□□ -1.59
LIG3-211ENST00000588713 UPF2Q9HAU5 1272 aaKnown RBP5.13□□□□□ -1.59
LIG3-211ENST00000588713 XDHP47989 1333 aa5.13□□□□□ -1.59
LIG3-211ENST00000588713 MYO9BQ13459 2157 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 DDX11L8A8MPP1 907 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 APBB1O00213 710 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 DNM1LO00429 736 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 CLTBP09497 229 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 MYOGP15173 224 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 ATP2B4P23634 1241 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 CNGA1P29973 690 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 RABGGTBP53611 331 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 PRSS12P56730 875 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 TLE2Q04725 743 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 WDR43Q15061 677 aaKnown RBP eCLIP5.12□□□□□ -1.59
LIG3-211ENST00000588713 C20orf194Q5TEA3 1177 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 GADL1Q6ZQY3 521 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 NLRP10Q86W26 655 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 TRMT2AQ8IZ69 625 aaKnown RBP5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms