RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 CTR9Q6PD62 1173 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 STOX1Q6ZVD7 989 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 SLC51AQ86UW1 340 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 MAPKAPK5Q8IW41 473 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 ZSCAN29Q8IWY8 852 aaPredicted RBP7.25□□□□□ -1.25
LIG3-206ENST00000586058 MB21D2Q8IYB1 491 aaPredicted RBP7.25□□□□□ -1.25
LIG3-206ENST00000586058 ZNF444Q8N0Y2 327 aaPredicted RBP7.25□□□□□ -1.25
LIG3-206ENST00000586058 STK11IPQ8N1F8 1099 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 FBXL16Q8N461 479 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 AGBL3Q8NEM8 1001 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 GTF3C6Q969F1 213 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 ZNF274Q96GC6 653 aaPredicted RBP7.25□□□□□ -1.25
LIG3-206ENST00000586058 ZDHHC15Q96MV8 337 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 LLPHQ9BRT6 129 aaKnown RBP7.25□□□□□ -1.25
LIG3-206ENST00000586058 DHX36Q9H2U1 1008 aaKnown RBP7.25□□□□□ -1.25
LIG3-206ENST00000586058 SWAP70Q9UH65 585 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 SLC12A7Q9Y666 1083 aa7.25□□□□□ -1.25
LIG3-206ENST00000586058 GOLGA8AA7E2F4 631 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 H3BQV1 296 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 SH2B2O14492 632 aaPredicted RBP7.24□□□□□ -1.25
LIG3-206ENST00000586058 FOXP2O15409 715 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 ZBTB43O43298 467 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 ORC4O43929 436 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 KCNA3P22001 575 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 LIFRP42702 1097 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 PTGER2P43116 358 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 RCAN1P53805 252 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 APOBRQ0VD83 1088 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 TNFAIP1Q13829 316 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 TRIM29Q14134 588 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 PPP2R5BQ15173 497 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 DLGAP5Q15398 846 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 ME3Q16798 604 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 CSPP1Q1MSJ5 1256 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 TPRNQ4KMQ1 711 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 IFIT1BQ5T764 474 aaKnown RBP7.24□□□□□ -1.25
LIG3-206ENST00000586058 IFFO2Q5TF58 517 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 CHST3Q7LGC8 479 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 CATIPQ7Z7H3 387 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 MICU3Q86XE3 530 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 TRIM22Q8IYM9 498 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 WASF1Q92558 559 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 MARVELD3Q96A59 401 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 MRIQ9BWK5 157 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 LRRC2Q9BYS8 371 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 USP40Q9NVE5 1235 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 TNKSO95271 1327 aa7.24□□□□□ -1.25
LIG3-206ENST00000586058 VPS37CA5D8V6 355 aaPredicted RBP7.23□□□□□ -1.25
LIG3-206ENST00000586058 PSMD14O00487 310 aa7.23□□□□□ -1.25
LIG3-206ENST00000586058 PFKFB2O60825 505 aa7.23□□□□□ -1.25
LIG3-206ENST00000586058 RAD17O75943 681 aa7.23□□□□□ -1.25
LIG3-206ENST00000586058 USP17L8P0C7I0 530 aa7.23□□□□□ -1.25
LIG3-206ENST00000586058 XBP1P17861 261 aa7.23□□□□□ -1.25
LIG3-206ENST00000586058 GJB2P29033 226 aa7.23□□□□□ -1.25
LIG3-206ENST00000586058 KIF5BP33176 963 aa7.23□□□□□ -1.25
LIG3-206ENST00000586058 EXOSC10Q01780 885 aaKnown RBP7.23□□□□□ -1.25
LIG3-206ENST00000586058 AKAP17AQ02040 695 aaKnown RBP7.23□□□□□ -1.25
LIG3-206ENST00000586058 GNL2Q13823 731 aaKnown RBP7.23□□□□□ -1.25
LIG3-206ENST00000586058 SLC4A8Q2Y0W8 1093 aa7.23□□□□□ -1.25
LIG3-206ENST00000586058 CFAP100Q494V2 611 aa7.23□□□□□ -1.25
LIG3-206ENST00000586058 C12orf60Q5U649 245 aa7.23□□□□□ -1.25
LIG3-206ENST00000586058 CERS5Q8N5B7 392 aa7.23□□□□□ -1.25
LIG3-206ENST00000586058 CTCFLQ8NI51 663 aaPredicted RBP7.23□□□□□ -1.25
LIG3-206ENST00000586058 ZNF384Q8TF68 577 aa7.23□□□□□ -1.25
LIG3-206ENST00000586058 ZSCAN10Q96SZ4 725 aaPredicted RBP7.23□□□□□ -1.25
LIG3-206ENST00000586058 AGXT2Q9BYV1 514 aa7.23□□□□□ -1.25
LIG3-206ENST00000586058 FHDC1Q9C0D6 1143 aaPredicted RBP7.23□□□□□ -1.25
LIG3-206ENST00000586058 OSBPL5Q9H0X9 879 aaPredicted RBP7.23□□□□□ -1.25
LIG3-206ENST00000586058 KAT14Q9H8E8 782 aa7.23□□□□□ -1.25
LIG3-206ENST00000586058 RBM28Q9NW13 759 aaKnown RBP7.23□□□□□ -1.25
LIG3-206ENST00000586058 SAP30BPQ9UHR5 308 aaKnown RBP7.23□□□□□ -1.25
LIG3-206ENST00000586058 TPCN1Q9ULQ1 816 aa7.23□□□□□ -1.25
LIG3-206ENST00000586058 TAF6LQ9Y6J9 622 aa7.23□□□□□ -1.25
LIG3-206ENST00000586058 COL4A5P29400 1685 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 YDJCA8MPS7 323 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 STX6O43752 255 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 DDAH1O94760 285 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 LARGE1O95461 756 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 VIL1P09327 827 aaKnown RBP7.22□□□□□ -1.25
LIG3-206ENST00000586058 NCLP19338 710 aaKnown RBP7.22□□□□□ -1.25
LIG3-206ENST00000586058 LMNB1P20700 586 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 LMOD1P29536 600 aaPredicted RBP7.22□□□□□ -1.25
LIG3-206ENST00000586058 CCT2P78371 535 aaKnown RBP7.22□□□□□ -1.25
LIG3-206ENST00000586058 RASSF7Q02833 373 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 RAB3GAP1Q15042 981 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 GRIK5Q16478 980 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 RTN1Q16799 776 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 LARP1BQ659C4 914 aaKnown RBP7.22□□□□□ -1.25
LIG3-206ENST00000586058 APOA5Q6Q788 366 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 ARHGAP27Q6ZUM4 889 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 C16orf86Q6ZW13 317 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 SGMS1Q86VZ5 419 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 NECAB1Q8N987 351 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 NUP133Q8WUM0 1156 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 HOOK2Q96ED9 719 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 ZKSCAN3Q9BRR0 538 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 LARP6Q9BRS8 491 aaKnown RBP7.22□□□□□ -1.25
LIG3-206ENST00000586058 ANP32EQ9BTT0 268 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 NBPF3Q9H094 633 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 EHD4Q9H223 541 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms