RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 ZBTB21Q9ULJ3 1066 aa18.35■□□□□ 0.53
CLIP3-202ENST00000585466 AGTPBP1Q9UPW5 1226 aa18.35■□□□□ 0.53
CLIP3-202ENST00000585466 SMIM22K7EJ46 135 aa18.34■□□□□ 0.53
CLIP3-202ENST00000585466 ASNSP08243 561 aa18.34■□□□□ 0.53
CLIP3-202ENST00000585466 GADL1Q6ZQY3 521 aa18.34■□□□□ 0.53
CLIP3-202ENST00000585466 CRACR2BQ8N4Y2 399 aaPredicted RBP18.34■□□□□ 0.53
CLIP3-202ENST00000585466 KBTBD3Q8NAB2 608 aa18.34■□□□□ 0.53
CLIP3-202ENST00000585466 PROCA1Q8NCQ7 364 aaPredicted RBP18.34■□□□□ 0.53
CLIP3-202ENST00000585466 PARK7Q99497 189 aaKnown RBP18.34■□□□□ 0.53
CLIP3-202ENST00000585466 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.34■□□□□ 0.53
CLIP3-202ENST00000585466 PUS7LQ9H0K6 701 aaKnown RBP18.34■□□□□ 0.53
CLIP3-202ENST00000585466 GINM1Q9NU53 330 aa18.34■□□□□ 0.53
CLIP3-202ENST00000585466 RBBP6Q7Z6E9 1792 aaKnown RBP18.33■□□□□ 0.53
CLIP3-202ENST00000585466 TTC41PQ6P2S7 1318 aa18.33■□□□□ 0.53
CLIP3-202ENST00000585466 CYP2D6P10635 497 aa18.33■□□□□ 0.52
CLIP3-202ENST00000585466 HMGCS2P54868 508 aa18.33■□□□□ 0.52
CLIP3-202ENST00000585466 BRCA2P51587 3418 aa18.33■□□□□ 0.52
CLIP3-202ENST00000585466 MYH8P13535 1937 aa18.32■□□□□ 0.52
CLIP3-202ENST00000585466 TTC6Q86TZ1 520 aa18.32■□□□□ 0.52
CLIP3-202ENST00000585466 MCM9Q9NXL9 1143 aa18.32■□□□□ 0.52
CLIP3-202ENST00000585466 KIAA0100Q14667 2235 aaKnown RBP18.32■□□□□ 0.52
CLIP3-202ENST00000585466 DOCK3Q8IZD9 2030 aa18.32■□□□□ 0.52
CLIP3-202ENST00000585466 GH2P01242 217 aa18.31■□□□□ 0.52
CLIP3-202ENST00000585466 GUCY1A2P33402 732 aa18.31■□□□□ 0.52
CLIP3-202ENST00000585466 SOX10P56693 466 aa18.31■□□□□ 0.52
CLIP3-202ENST00000585466 BACE1P56817 501 aa18.31■□□□□ 0.52
CLIP3-202ENST00000585466 MTMR2Q13614 643 aa18.31■□□□□ 0.52
CLIP3-202ENST00000585466 AAMPQ13685 434 aa18.31■□□□□ 0.52
CLIP3-202ENST00000585466 EXOC6Q8TAG9 804 aa18.31■□□□□ 0.52
CLIP3-202ENST00000585466 OSBP2Q969R2 916 aa18.31■□□□□ 0.52
CLIP3-202ENST00000585466 TRIM47Q96LD4 638 aa18.31■□□□□ 0.52
CLIP3-202ENST00000585466 SLC44A5Q8NCS7 719 aa18.3■□□□□ 0.52
CLIP3-202ENST00000585466 ARMC5Q96C12 935 aa18.3■□□□□ 0.52
CLIP3-202ENST00000585466 GPATCH3Q96I76 525 aa18.3■□□□□ 0.52
CLIP3-202ENST00000585466 TRIM34Q9BYJ4 488 aa18.3■□□□□ 0.52
CLIP3-202ENST00000585466 AS3MTQ9HBK9 375 aa18.3■□□□□ 0.52
CLIP3-202ENST00000585466 ATP8A2Q9NTI2 1148 aa18.3■□□□□ 0.52
CLIP3-202ENST00000585466 PTCH2Q9Y6C5 1203 aa18.3■□□□□ 0.52
CLIP3-202ENST00000585466 CYP2D7A0A087X1C5 515 aa18.29■□□□□ 0.52
CLIP3-202ENST00000585466 POLR3DP05423 398 aaPredicted RBP18.29■□□□□ 0.52
CLIP3-202ENST00000585466 MX1P20591 662 aa18.29■□□□□ 0.52
CLIP3-202ENST00000585466 ZSCAN25Q6NSZ9 544 aa18.29■□□□□ 0.52
CLIP3-202ENST00000585466 SMC5Q8IY18 1101 aa18.29■□□□□ 0.52
CLIP3-202ENST00000585466 GCC1Q96CN9 775 aa18.29■□□□□ 0.52
CLIP3-202ENST00000585466 STRBPQ96SI9 672 aaKnown RBP18.29■□□□□ 0.52
CLIP3-202ENST00000585466 EMILIN3Q9NT22 766 aa18.29■□□□□ 0.52
CLIP3-202ENST00000585466 GREB1LQ9C091 1923 aaPredicted RBP18.29■□□□□ 0.52
CLIP3-202ENST00000585466 RNF113AO15541 343 aaKnown RBP18.28■□□□□ 0.52
CLIP3-202ENST00000585466 GLRX3O76003 335 aaKnown RBP18.28■□□□□ 0.52
CLIP3-202ENST00000585466 IGHDP01880 384 aa18.28■□□□□ 0.52
CLIP3-202ENST00000585466 CERKLQ49MI3 558 aaPredicted RBP18.28■□□□□ 0.52
CLIP3-202ENST00000585466 C12orf60Q5U649 245 aa18.28■□□□□ 0.52
CLIP3-202ENST00000585466 POTEEQ6S8J3 1075 aa18.28■□□□□ 0.52
CLIP3-202ENST00000585466 APPBP2Q92624 585 aa18.28■□□□□ 0.52
CLIP3-202ENST00000585466 DYNLL2Q96FJ2 89 aa18.28■□□□□ 0.52
CLIP3-202ENST00000585466 STAP2Q9UGK3 403 aa18.28■□□□□ 0.52
CLIP3-202ENST00000585466 TNRC18O15417 2968 aaPredicted RBP18.27■□□□□ 0.52
CLIP3-202ENST00000585466 C19orf81C9J6K1 198 aa18.27■□□□□ 0.52
CLIP3-202ENST00000585466 USP17L10C9JJH3 530 aa18.27■□□□□ 0.52
CLIP3-202ENST00000585466 GNRH1P01148 92 aa18.27■□□□□ 0.52
CLIP3-202ENST00000585466 OSBPP22059 807 aa18.27■□□□□ 0.52
CLIP3-202ENST00000585466 HOXA7P31268 230 aaPredicted RBP18.27■□□□□ 0.52
CLIP3-202ENST00000585466 PSMC4P43686 418 aa18.27■□□□□ 0.52
CLIP3-202ENST00000585466 ABCB5Q2M3G0 1257 aa18.27■□□□□ 0.52
CLIP3-202ENST00000585466 ANKRD45Q5TZF3 282 aa18.27■□□□□ 0.52
CLIP3-202ENST00000585466 ACER1Q8TDN7 264 aa18.27■□□□□ 0.52
CLIP3-202ENST00000585466 C12orf42Q96LP6 360 aa18.27■□□□□ 0.52
CLIP3-202ENST00000585466 ASCC2Q9H1I8 757 aaPredicted RBP18.27■□□□□ 0.52
CLIP3-202ENST00000585466 SLC4A4Q9Y6R1 1079 aa18.27■□□□□ 0.52
CLIP3-202ENST00000585466 GSG1L2A8MUP6 293 aa18.26■□□□□ 0.51
CLIP3-202ENST00000585466 USP17L12C9JPN9 530 aa18.26■□□□□ 0.51
CLIP3-202ENST00000585466 USP17L21D6R901 530 aa18.26■□□□□ 0.51
CLIP3-202ENST00000585466 M0R2C6 588 aa18.26■□□□□ 0.51
CLIP3-202ENST00000585466 CTR9Q6PD62 1173 aa18.26■□□□□ 0.51
CLIP3-202ENST00000585466 ZNF333Q96JL9 665 aa18.26■□□□□ 0.51
CLIP3-202ENST00000585466 EPB41L4AQ9HCS5 686 aaPredicted RBP18.26■□□□□ 0.51
CLIP3-202ENST00000585466 SRRDQ9UH36 339 aa18.26■□□□□ 0.51
CLIP3-202ENST00000585466 TAOK2Q9UL54 1235 aa18.26■□□□□ 0.51
CLIP3-202ENST00000585466 SUPT16HQ9Y5B9 1047 aaKnown RBP18.26■□□□□ 0.51
CLIP3-202ENST00000585466 PLXNB2O15031 1838 aa18.26■□□□□ 0.51
CLIP3-202ENST00000585466 RLFQ13129 1914 aa18.25■□□□□ 0.51
CLIP3-202ENST00000585466 ERC2O15083 957 aa18.25■□□□□ 0.51
CLIP3-202ENST00000585466 ECM2O94769 699 aaPredicted RBP18.25■□□□□ 0.51
CLIP3-202ENST00000585466 ZFYP08048 801 aaPredicted RBP18.25■□□□□ 0.51
CLIP3-202ENST00000585466 PDE1AP54750 535 aa18.25■□□□□ 0.51
CLIP3-202ENST00000585466 MLLT1Q03111 559 aaPredicted RBP18.25■□□□□ 0.51
CLIP3-202ENST00000585466 KIF22Q14807 665 aa18.25■□□□□ 0.51
CLIP3-202ENST00000585466 SEPT2Q15019 361 aa18.25■□□□□ 0.51
CLIP3-202ENST00000585466 ARHGEF6Q15052 776 aa18.25■□□□□ 0.51
CLIP3-202ENST00000585466 PNMA3Q9UL41 463 aa18.25■□□□□ 0.51
CLIP3-202ENST00000585466 A0A1W2PRG0 241 aa18.24■□□□□ 0.51
CLIP3-202ENST00000585466 GPAA1O43292 621 aa18.24■□□□□ 0.51
CLIP3-202ENST00000585466 RAB3GAP1Q15042 981 aa18.24■□□□□ 0.51
CLIP3-202ENST00000585466 FAM110CQ1W6H9 321 aa18.24■□□□□ 0.51
CLIP3-202ENST00000585466 ZMYM1Q5SVZ6 1142 aa18.24■□□□□ 0.51
CLIP3-202ENST00000585466 C16orf86Q6ZW13 317 aa18.24■□□□□ 0.51
CLIP3-202ENST00000585466 SIAH1Q8IUQ4 282 aa18.24■□□□□ 0.51
CLIP3-202ENST00000585466 ANKRD13CQ8N6S4 541 aa18.24■□□□□ 0.51
CLIP3-202ENST00000585466 SMCR8Q8TEV9 937 aaPredicted RBP18.24■□□□□ 0.51
CLIP3-202ENST00000585466 SEC62Q99442 399 aaKnown RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms