RNA–Protein interactions for RNA: ENST00000583877.5

NUP85-223, Transcript of nucleoporin 85, human

TSL 3

Gene NUP85, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP85-223	ENST00000583877	HMGCS2	P54868	508 aa		10.81	□□□□□ -0.68
NUP85-223	ENST00000583877	TIMM10	P62072	90 aa		10.81	□□□□□ -0.68
NUP85-223	ENST00000583877	TRIM32	Q13049	653 aa		10.81	□□□□□ -0.68
NUP85-223	ENST00000583877	SH3D19	Q5HYK7	790 aa		10.81	□□□□□ -0.68
NUP85-223	ENST00000583877	ERICH6	Q7L0X2	663 aa		10.81	□□□□□ -0.68
NUP85-223	ENST00000583877	DEFB123	Q8N688	67 aa		10.81	□□□□□ -0.68
NUP85-223	ENST00000583877	ZNF384	Q8TF68	577 aa		10.81	□□□□□ -0.68
NUP85-223	ENST00000583877	ASCC2	Q9H1I8	757 aa	Predicted RBP	10.81	□□□□□ -0.68
NUP85-223	ENST00000583877	C11orf49	Q9H6J7	331 aa		10.81	□□□□□ -0.68
NUP85-223	ENST00000583877	MORF4L1	Q9UBU8	362 aa		10.81	□□□□□ -0.68
NUP85-223	ENST00000583877	OGDHL	Q9ULD0	1010 aa		10.81	□□□□□ -0.68
NUP85-223	ENST00000583877	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	10.81	□□□□□ -0.68
NUP85-223	ENST00000583877	PA2G4	Q9UQ80	394 aa	Known RBP	10.81	□□□□□ -0.68
NUP85-223	ENST00000583877	MYH8	P13535	1937 aa		10.81	□□□□□ -0.68
NUP85-223	ENST00000583877	LTBP2	Q14767	1821 aa		10.81	□□□□□ -0.68
NUP85-223	ENST00000583877	FAM196B	A6NMK8	535 aa		10.8	□□□□□ -0.68
NUP85-223	ENST00000583877	LDHC	P07864	332 aa		10.8	□□□□□ -0.68
NUP85-223	ENST00000583877	CAP2	P40123	477 aa		10.8	□□□□□ -0.68
NUP85-223	ENST00000583877	MAGEA10	P43363	369 aa	Predicted RBP	10.8	□□□□□ -0.68
NUP85-223	ENST00000583877	GSTO1	P78417	241 aa		10.8	□□□□□ -0.68
NUP85-223	ENST00000583877	MVP	Q14764	893 aa	Known RBP	10.8	□□□□□ -0.68
NUP85-223	ENST00000583877	MAP3K21	Q5TCX8	1036 aa		10.8	□□□□□ -0.68
NUP85-223	ENST00000583877	TDH	Q8IZJ6	230 aa		10.8	□□□□□ -0.68
NUP85-223	ENST00000583877	ZNF579	Q8NAF0	562 aa	Known RBP	10.8	□□□□□ -0.68
NUP85-223	ENST00000583877	TRIB2	Q92519	343 aa		10.8	□□□□□ -0.68
NUP85-223	ENST00000583877	AS3MT	Q9HBK9	375 aa		10.8	□□□□□ -0.68
NUP85-223	ENST00000583877	HERC5	Q9UII4	1024 aa	Known RBP	10.8	□□□□□ -0.68
NUP85-223	ENST00000583877	AKAP2	Q9Y2D5	859 aa		10.8	□□□□□ -0.68
NUP85-223	ENST00000583877	STXBP5L	Q9Y2K9	1186 aa		10.8	□□□□□ -0.68
NUP85-223	ENST00000583877	SMCHD1	A6NHR9	2005 aa		10.79	□□□□□ -0.68
NUP85-223	ENST00000583877		A0A1B0GUL7	405 aa		10.79	□□□□□ -0.68
NUP85-223	ENST00000583877	XRCC5	P13010	732 aa	Known RBP	10.79	□□□□□ -0.68
NUP85-223	ENST00000583877	SYN1	P17600	705 aa		10.79	□□□□□ -0.68
NUP85-223	ENST00000583877	PSEN1	P49768	467 aa		10.79	□□□□□ -0.68
NUP85-223	ENST00000583877		Q7L0L9	218 aa		10.79	□□□□□ -0.68
NUP85-223	ENST00000583877	TRMT44	Q8IYL2	757 aa	Known RBP	10.79	□□□□□ -0.68
NUP85-223	ENST00000583877	NSUN4	Q96CB9	384 aa	Known RBP	10.79	□□□□□ -0.68
NUP85-223	ENST00000583877	XAGE2	Q96GT9	111 aa		10.79	□□□□□ -0.68
NUP85-223	ENST00000583877	NUDT12	Q9BQG2	462 aa		10.79	□□□□□ -0.68
NUP85-223	ENST00000583877	WDR18	Q9BV38	432 aa		10.79	□□□□□ -0.68
NUP85-223	ENST00000583877	SMC4	Q9NTJ3	1288 aa		10.79	□□□□□ -0.68
NUP85-223	ENST00000583877	MTMR10	Q9NXD2	777 aa		10.79	□□□□□ -0.68
NUP85-223	ENST00000583877	CYP2B6	P20813	491 aa		10.78	□□□□□ -0.68
NUP85-223	ENST00000583877	HOXA7	P31268	230 aa	Predicted RBP	10.78	□□□□□ -0.68
NUP85-223	ENST00000583877	BACE1	P56817	501 aa		10.78	□□□□□ -0.68
NUP85-223	ENST00000583877	IRX3	P78415	501 aa	Predicted RBP	10.78	□□□□□ -0.68
NUP85-223	ENST00000583877	SLFN5	Q08AF3	891 aa		10.78	□□□□□ -0.68
NUP85-223	ENST00000583877	RRP1B	Q14684	758 aa	Known RBP	10.78	□□□□□ -0.68
NUP85-223	ENST00000583877	SPATA5	Q8NB90	893 aa		10.78	□□□□□ -0.68
NUP85-223	ENST00000583877	SOCS4	Q8WXH5	440 aa		10.78	□□□□□ -0.68
NUP85-223	ENST00000583877	UBE2O	Q9C0C9	1292 aa	Known RBP	10.78	□□□□□ -0.68
NUP85-223	ENST00000583877	HMG20B	Q9P0W2	317 aa		10.78	□□□□□ -0.68
NUP85-223	ENST00000583877	PI4KB	Q9UBF8	816 aa		10.78	□□□□□ -0.68
NUP85-223	ENST00000583877	PFAS	O15067	1338 aa		10.78	□□□□□ -0.68
NUP85-223	ENST00000583877	MYO9B	Q13459	2157 aa		10.77	□□□□□ -0.68
NUP85-223	ENST00000583877	ASNS	P08243	561 aa		10.77	□□□□□ -0.69
NUP85-223	ENST00000583877	COL6A1	P12109	1028 aa		10.77	□□□□□ -0.69
NUP85-223	ENST00000583877	HERVK_113	P62684	666 aa		10.77	□□□□□ -0.69
NUP85-223	ENST00000583877	TFCP2	Q12800	502 aa		10.77	□□□□□ -0.69
NUP85-223	ENST00000583877	MTMR2	Q13614	643 aa		10.77	□□□□□ -0.69
NUP85-223	ENST00000583877	TEX11	Q8IYF3	940 aa		10.77	□□□□□ -0.69
NUP85-223	ENST00000583877	GPRC5A	Q8NFJ5	357 aa		10.77	□□□□□ -0.69
NUP85-223	ENST00000583877	API5	Q9BZZ5	524 aa	Known RBP	10.77	□□□□□ -0.69
NUP85-223	ENST00000583877	DHX36	Q9H2U1	1008 aa	Known RBP	10.77	□□□□□ -0.69
NUP85-223	ENST00000583877	TMOD4	Q9NZQ9	345 aa		10.77	□□□□□ -0.69
NUP85-223	ENST00000583877	C19orf81	C9J6K1	198 aa		10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	SRGAP3	O43295	1099 aa		10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	ZKSCAN1	P17029	563 aa	Predicted RBP	10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	ARID4A	P29374	1257 aa	Predicted RBP	10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	MAPK4	P31152	587 aa		10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	CACNB2	Q08289	660 aa	Predicted RBP	10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	PDE3A	Q14432	1141 aa		10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	TBC1D9	Q6ZT07	1266 aa		10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	GTF3C2	Q8WUA4	911 aa	Predicted RBP	10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	USP6NL	Q92738	828 aa		10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	NEUROD6	Q96NK8	337 aa		10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	P2RX7	Q99572	595 aa	Known RBP	10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	MEIS3	Q99687	375 aa		10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	TXNRD2	Q9NNW7	524 aa		10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	GINM1	Q9NU53	330 aa		10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	RAI14	Q9P0K7	980 aa		10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	NOB1	Q9ULX3	412 aa	Known RBP	10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	MUC3A	Q02505	3323 aa		10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	PLXNA1	Q9UIW2	1896 aa		10.76	□□□□□ -0.69
NUP85-223	ENST00000583877	PARP14	Q460N5	1801 aa		10.75	□□□□□ -0.69
NUP85-223	ENST00000583877	ZNF236	Q9UL36	1845 aa		10.75	□□□□□ -0.69
NUP85-223	ENST00000583877	USP17L10	C9JJH3	530 aa		10.75	□□□□□ -0.69
NUP85-223	ENST00000583877	CT47B1	P0C2W7	299 aa	Predicted RBP	10.75	□□□□□ -0.69
NUP85-223	ENST00000583877	RGS2	P41220	211 aa		10.75	□□□□□ -0.69
NUP85-223	ENST00000583877	ERVK-9	P63128	1117 aa		10.75	□□□□□ -0.69
NUP85-223	ENST00000583877	ERVK-24	P63145	666 aa		10.75	□□□□□ -0.69
NUP85-223	ENST00000583877	MTX1	Q13505	466 aa		10.75	□□□□□ -0.69
NUP85-223	ENST00000583877	MORN1	Q5T089	497 aa		10.75	□□□□□ -0.69
NUP85-223	ENST00000583877	GORAB	Q5T7V8	394 aa		10.75	□□□□□ -0.69
NUP85-223	ENST00000583877	LHX8	Q68G74	356 aa		10.75	□□□□□ -0.69
NUP85-223	ENST00000583877	PI16	Q6UXB8	463 aa		10.75	□□□□□ -0.69
NUP85-223	ENST00000583877	METTL16	Q86W50	562 aa	Known RBP	10.75	□□□□□ -0.69
NUP85-223	ENST00000583877	PIP4P2	Q8N4L2	257 aa		10.75	□□□□□ -0.69
NUP85-223	ENST00000583877	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	10.75	□□□□□ -0.69
NUP85-223	ENST00000583877	NOL10	Q9BSC4	688 aa	Known RBP	10.75	□□□□□ -0.69

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