RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 HID1Q8IV36 788 aa7.67□□□□□ -1.18
SMCHD1-208ENST00000583344 MFSD4AQ8N468 514 aa7.67□□□□□ -1.18
SMCHD1-208ENST00000583344 CARS2Q9HA77 564 aaKnown RBP7.67□□□□□ -1.18
SMCHD1-208ENST00000583344 SEMA3GQ9NS98 782 aa7.67□□□□□ -1.18
SMCHD1-208ENST00000583344 H3BS24 57 aa7.66□□□□□ -1.18
SMCHD1-208ENST00000583344 ZNF865P0CJ78 1059 aaPredicted RBP7.66□□□□□ -1.18
SMCHD1-208ENST00000583344 LMNB1P20700 586 aa7.66□□□□□ -1.18
SMCHD1-208ENST00000583344 LIG3P49916 1009 aa7.66□□□□□ -1.18
SMCHD1-208ENST00000583344 RPS26P62854 115 aaKnown RBP7.66□□□□□ -1.18
SMCHD1-208ENST00000583344 MFSD2AQ8NA29 543 aa7.66□□□□□ -1.18
SMCHD1-208ENST00000583344 TMEM40Q8WWA1 233 aa7.66□□□□□ -1.18
SMCHD1-208ENST00000583344 DPH2Q9BQC3 489 aaPredicted RBP7.66□□□□□ -1.18
SMCHD1-208ENST00000583344 CTNND2Q9UQB3 1225 aa7.66□□□□□ -1.18
SMCHD1-208ENST00000583344 CAPN6Q9Y6Q1 641 aa7.66□□□□□ -1.18
SMCHD1-208ENST00000583344 GFRA2O00451 464 aa7.65□□□□□ -1.18
SMCHD1-208ENST00000583344 CBX7O95931 251 aa7.65□□□□□ -1.18
SMCHD1-208ENST00000583344 CST3P01034 146 aaPredicted RBP7.65□□□□□ -1.18
SMCHD1-208ENST00000583344 EAPPQ56P03 285 aaPredicted RBP7.65□□□□□ -1.18
SMCHD1-208ENST00000583344 AGMOQ6ZNB7 445 aa7.65□□□□□ -1.18
SMCHD1-208ENST00000583344 C22orf34Q6ZV56 151 aa7.65□□□□□ -1.18
SMCHD1-208ENST00000583344 ZSWIM9Q86XI8 627 aa7.65□□□□□ -1.18
SMCHD1-208ENST00000583344 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.65□□□□□ -1.18
SMCHD1-208ENST00000583344 PATL2C9JE40 543 aaKnown RBP7.64□□□□□ -1.19
SMCHD1-208ENST00000583344 FARP2O94887 1054 aaPredicted RBP7.64□□□□□ -1.19
SMCHD1-208ENST00000583344 TFE3P19532 575 aaPredicted RBP7.64□□□□□ -1.19
SMCHD1-208ENST00000583344 KCNMB1Q16558 191 aa7.64□□□□□ -1.19
SMCHD1-208ENST00000583344 FYB2Q5VWT5 728 aa7.64□□□□□ -1.19
SMCHD1-208ENST00000583344 TJP2Q9UDY2 1190 aa7.64□□□□□ -1.19
SMCHD1-208ENST00000583344 ST14Q9Y5Y6 855 aa7.64□□□□□ -1.19
SMCHD1-208ENST00000583344 ZNF503-AS2A6NEH8 195 aa7.63□□□□□ -1.19
SMCHD1-208ENST00000583344 PGRP06401 933 aa7.63□□□□□ -1.19
SMCHD1-208ENST00000583344 SND1Q7KZF4 910 aaKnown RBP eCLIP7.63□□□□□ -1.19
SMCHD1-208ENST00000583344 CDH24Q86UP0 819 aa7.63□□□□□ -1.19
SMCHD1-208ENST00000583344 MIR1-1HGQ9H1L0 117 aa7.63□□□□□ -1.19
SMCHD1-208ENST00000583344 C19orf73Q9NVV2 129 aa7.62□□□□□ -1.19
SMCHD1-208ENST00000583344 LMCD1Q9NZU5 365 aa7.62□□□□□ -1.19
SMCHD1-208ENST00000583344 PARP2Q9UGN5 583 aa7.62□□□□□ -1.19
SMCHD1-208ENST00000583344 TLR6Q9Y2C9 796 aa7.62□□□□□ -1.19
SMCHD1-208ENST00000583344 LRRC10BA6NIK2 292 aa7.61□□□□□ -1.19
SMCHD1-208ENST00000583344 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.61□□□□□ -1.19
SMCHD1-208ENST00000583344 F6X3S4 739 aa7.61□□□□□ -1.19
SMCHD1-208ENST00000583344 ZNF746Q6NUN9 644 aaPredicted RBP7.61□□□□□ -1.19
SMCHD1-208ENST00000583344 AEBP1Q8IUX7 1158 aa7.61□□□□□ -1.19
SMCHD1-208ENST00000583344 JARID2Q92833 1246 aaPredicted RBP7.61□□□□□ -1.19
SMCHD1-208ENST00000583344 LIN37Q96GY3 246 aaPredicted RBP7.61□□□□□ -1.19
SMCHD1-208ENST00000583344 FAM161BQ96MY7 647 aa7.61□□□□□ -1.19
SMCHD1-208ENST00000583344 ARID1BQ8NFD5 2236 aaPredicted RBP7.61□□□□□ -1.19
SMCHD1-208ENST00000583344 TNK2Q07912 1038 aa7.6□□□□□ -1.19
SMCHD1-208ENST00000583344 PSMD2Q13200 908 aa7.6□□□□□ -1.19
SMCHD1-208ENST00000583344 MLANAQ16655 118 aa7.6□□□□□ -1.19
SMCHD1-208ENST00000583344 NPAS4Q8IUM7 802 aa7.6□□□□□ -1.19
SMCHD1-208ENST00000583344 KSR1Q8IVT5 923 aa7.6□□□□□ -1.19
SMCHD1-208ENST00000583344 MRPL41Q8IXM3 137 aaKnown RBP7.6□□□□□ -1.19
SMCHD1-208ENST00000583344 UBE2FQ969M7 185 aa7.6□□□□□ -1.19
SMCHD1-208ENST00000583344 TMEM87BQ96K49 555 aa7.6□□□□□ -1.19
SMCHD1-208ENST00000583344 ZSWIM5Q9P217 1185 aa7.6□□□□□ -1.19
SMCHD1-208ENST00000583344 TACC3Q9Y6A5 838 aa7.6□□□□□ -1.19
SMCHD1-208ENST00000583344 CTSHP09668 335 aa7.59□□□□□ -1.19
SMCHD1-208ENST00000583344 AFMP43652 599 aa7.59□□□□□ -1.19
SMCHD1-208ENST00000583344 MESP2Q0VG99 397 aa7.59□□□□□ -1.19
SMCHD1-208ENST00000583344 CORINQ9Y5Q5 1042 aa7.59□□□□□ -1.19
SMCHD1-208ENST00000583344 DAB2P98082 770 aa7.58□□□□□ -1.2
SMCHD1-208ENST00000583344 RPL6Q02878 288 aaKnown RBP7.58□□□□□ -1.2
SMCHD1-208ENST00000583344 PKN1Q16512 942 aa7.58□□□□□ -1.2
SMCHD1-208ENST00000583344 TSNAXIP1Q2TAA8 658 aa7.58□□□□□ -1.2
SMCHD1-208ENST00000583344 THAP5Q7Z6K1 395 aa7.58□□□□□ -1.2
SMCHD1-208ENST00000583344 PHC3Q8NDX5 983 aa7.58□□□□□ -1.2
SMCHD1-208ENST00000583344 ACSF2Q96CM8 615 aaPredicted RBP7.58□□□□□ -1.2
SMCHD1-208ENST00000583344 KIRREL1Q96J84 757 aa7.58□□□□□ -1.2
SMCHD1-208ENST00000583344 WASH4PA8MWX3 477 aa7.57□□□□□ -1.2
SMCHD1-208ENST00000583344 CYP7A1P22680 504 aa7.57□□□□□ -1.2
SMCHD1-208ENST00000583344 KIR3DL1P43629 444 aa7.57□□□□□ -1.2
SMCHD1-208ENST00000583344 PDE4BQ07343 736 aa7.57□□□□□ -1.2
SMCHD1-208ENST00000583344 TAF1CQ15572 869 aaPredicted RBP7.57□□□□□ -1.2
SMCHD1-208ENST00000583344 SLC6A19Q695T7 634 aa7.57□□□□□ -1.2
SMCHD1-208ENST00000583344 DNAJC14Q6Y2X3 702 aaPredicted RBP7.57□□□□□ -1.2
SMCHD1-208ENST00000583344 DNAJB8Q8NHS0 232 aa7.57□□□□□ -1.2
SMCHD1-208ENST00000583344 SLC38A3Q99624 504 aa7.57□□□□□ -1.2
SMCHD1-208ENST00000583344 SLAMF8Q9P0V8 285 aa7.57□□□□□ -1.2
SMCHD1-208ENST00000583344 DBX1A6NMT0 343 aa7.56□□□□□ -1.2
SMCHD1-208ENST00000583344 GLI1P08151 1106 aa7.56□□□□□ -1.2
SMCHD1-208ENST00000583344 GDNFP39905 211 aa7.56□□□□□ -1.2
SMCHD1-208ENST00000583344 ST13P50502 369 aaKnown RBP7.56□□□□□ -1.2
SMCHD1-208ENST00000583344 BNC2Q6ZN30 1099 aaPredicted RBP7.56□□□□□ -1.2
SMCHD1-208ENST00000583344 PRR23BQ6ZRT6 265 aa7.56□□□□□ -1.2
SMCHD1-208ENST00000583344 MCATQ8IVS2 390 aaKnown RBP7.56□□□□□ -1.2
SMCHD1-208ENST00000583344 COX4I2Q96KJ9 171 aa7.56□□□□□ -1.2
SMCHD1-208ENST00000583344 FAM84AQ96KN4 292 aa7.56□□□□□ -1.2
SMCHD1-208ENST00000583344 Q96M66 194 aa7.56□□□□□ -1.2
SMCHD1-208ENST00000583344 ALPK1Q96QP1 1244 aa7.56□□□□□ -1.2
SMCHD1-208ENST00000583344 NOC4LQ9BVI4 516 aaKnown RBP7.56□□□□□ -1.2
SMCHD1-208ENST00000583344 ESR1P03372 595 aa7.55□□□□□ -1.2
SMCHD1-208ENST00000583344 RLBP1P12271 317 aa7.55□□□□□ -1.2
SMCHD1-208ENST00000583344 ETV3P41162 512 aa7.55□□□□□ -1.2
SMCHD1-208ENST00000583344 XPCQ01831 940 aaPredicted RBP7.55□□□□□ -1.2
SMCHD1-208ENST00000583344 MPZL3Q6UWV2 235 aa7.55□□□□□ -1.2
SMCHD1-208ENST00000583344 FAM53CQ9NYF3 392 aa7.55□□□□□ -1.2
SMCHD1-208ENST00000583344 ADAM30Q9UKF2 790 aa7.55□□□□□ -1.2
SMCHD1-208ENST00000583344 DNAJC25-GNG10A0A024R161 153 aa7.54□□□□□ -1.2
SMCHD1-208ENST00000583344 UPK3BL1B0FP48 263 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms