RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 CERKLQ49MI3 558 aaPredicted RBP23.38■■□□□ 1.33
SS18-209ENST00000578595 FASTKD5Q7L8L6 764 aaKnown RBP23.38■■□□□ 1.33
SS18-209ENST00000578595 METTL16Q86W50 562 aaKnown RBP23.38■■□□□ 1.33
SS18-209ENST00000578595 STRBPQ96SI9 672 aaKnown RBP23.38■■□□□ 1.33
SS18-209ENST00000578595 CYP2D7A0A087X1C5 515 aa23.37■■□□□ 1.33
SS18-209ENST00000578595 USP17L12C9JPN9 530 aa23.37■■□□□ 1.33
SS18-209ENST00000578595 USP17L21D6R901 530 aa23.37■■□□□ 1.33
SS18-209ENST00000578595 PDHXO00330 501 aa23.37■■□□□ 1.33
SS18-209ENST00000578595 CAPN15O75808 1086 aa23.37■■□□□ 1.33
SS18-209ENST00000578595 GH2P01242 217 aa23.37■■□□□ 1.33
SS18-209ENST00000578595 TDO2P48775 406 aa23.37■■□□□ 1.33
SS18-209ENST00000578595 EVX2Q03828 476 aa23.37■■□□□ 1.33
SS18-209ENST00000578595 ANKRD23Q86SG2 305 aa23.37■■□□□ 1.33
SS18-209ENST00000578595 PLEKHM2Q8IWE5 1019 aa23.37■■□□□ 1.33
SS18-209ENST00000578595 ZNF280CQ8ND82 737 aa23.37■■□□□ 1.33
SS18-209ENST00000578595 SEC62Q99442 399 aaKnown RBP23.37■■□□□ 1.33
SS18-209ENST00000578595 CFHR5Q9BXR6 569 aa23.37■■□□□ 1.33
SS18-209ENST00000578595 TBC1D2Q9BYX2 928 aa23.37■■□□□ 1.33
SS18-209ENST00000578595 CABP5Q9NP86 173 aa23.37■■□□□ 1.33
SS18-209ENST00000578595 A0A0G2JLL6 359 aaPredicted RBP23.36■■□□□ 1.33
SS18-209ENST00000578595 RAB3GAP1Q15042 981 aa23.36■■□□□ 1.33
SS18-209ENST00000578595 ABCB5Q2M3G0 1257 aa23.36■■□□□ 1.33
SS18-209ENST00000578595 PRRT2Q7Z6L0 340 aaPredicted RBP23.36■■□□□ 1.33
SS18-209ENST00000578595 DYNLL2Q96FJ2 89 aa23.36■■□□□ 1.33
SS18-209ENST00000578595 FEZ1Q99689 392 aa23.36■■□□□ 1.33
SS18-209ENST00000578595 GNAT2P19087 354 aa23.35■■□□□ 1.33
SS18-209ENST00000578595 SHMT1P34896 483 aa23.35■■□□□ 1.33
SS18-209ENST00000578595 HMGCS2P54868 508 aa23.35■■□□□ 1.33
SS18-209ENST00000578595 CTU1Q7Z7A3 348 aaKnown RBP23.35■■□□□ 1.33
SS18-209ENST00000578595 STK11IPQ8N1F8 1099 aa23.35■■□□□ 1.33
SS18-209ENST00000578595 SLC44A5Q8NCS7 719 aa23.35■■□□□ 1.33
SS18-209ENST00000578595 ZCCHC17Q9NP64 241 aaKnown RBP23.35■■□□□ 1.33
SS18-209ENST00000578595 ARPP21Q9UBL0 812 aaPredicted RBP23.35■■□□□ 1.33
SS18-209ENST00000578595 ZSWIM8A7E2V4 1837 aa23.35■■□□□ 1.33
SS18-209ENST00000578595 JAG1P78504 1218 aa23.34■■□□□ 1.33
SS18-209ENST00000578595 MTMR2Q13614 643 aa23.34■■□□□ 1.33
SS18-209ENST00000578595 ZMYM1Q5SVZ6 1142 aa23.34■■□□□ 1.33
SS18-209ENST00000578595 TATDN1Q6P1N9 297 aa23.34■■□□□ 1.33
SS18-209ENST00000578595 PARK7Q99497 189 aaKnown RBP23.34■■□□□ 1.33
SS18-209ENST00000578595 MCOLN1Q9GZU1 580 aa23.34■■□□□ 1.33
SS18-209ENST00000578595 GINM1Q9NU53 330 aa23.34■■□□□ 1.33
SS18-209ENST00000578595 MINDY4BA8MYZ0 360 aa23.33■■□□□ 1.33
SS18-209ENST00000578595 ECM2O94769 699 aaPredicted RBP23.33■■□□□ 1.33
SS18-209ENST00000578595 NOM1Q5C9Z4 860 aaKnown RBP23.33■■□□□ 1.33
SS18-209ENST00000578595 NACAP1Q9BZK3 213 aa23.33■■□□□ 1.33
SS18-209ENST00000578595 TMOD4Q9NZQ9 345 aa23.33■■□□□ 1.33
SS18-209ENST00000578595 SWAP70Q9UH65 585 aa23.33■■□□□ 1.33
SS18-209ENST00000578595 MGAMO43451 1857 aa23.32■■□□□ 1.32
SS18-209ENST00000578595 GSG1L2A8MUP6 293 aa23.32■■□□□ 1.32
SS18-209ENST00000578595 NEFLP07196 543 aa23.32■■□□□ 1.32
SS18-209ENST00000578595 SP3Q02447 781 aa23.32■■□□□ 1.32
SS18-209ENST00000578595 ZYXQ15942 572 aaKnown RBP23.32■■□□□ 1.32
SS18-209ENST00000578595 C12orf60Q5U649 245 aa23.32■■□□□ 1.32
SS18-209ENST00000578595 CTR9Q6PD62 1173 aa23.32■■□□□ 1.32
SS18-209ENST00000578595 CCDC129Q6ZRS4 1044 aa23.32■■□□□ 1.32
SS18-209ENST00000578595 CD99L2Q8TCZ2 262 aa23.32■■□□□ 1.32
SS18-209ENST00000578595 ERO1AQ96HE7 468 aa23.32■■□□□ 1.32
SS18-209ENST00000578595 CPA4Q9UI42 421 aa23.32■■□□□ 1.32
SS18-209ENST00000578595 CYP2C8P10632 490 aa23.31■■□□□ 1.32
SS18-209ENST00000578595 GABPAQ06546 454 aa23.31■■□□□ 1.32
SS18-209ENST00000578595 MOGSQ13724 837 aa23.31■■□□□ 1.32
SS18-209ENST00000578595 GPAT2Q6NUI2 795 aa23.31■■□□□ 1.32
SS18-209ENST00000578595 SMCR8Q8TEV9 937 aaPredicted RBP23.31■■□□□ 1.32
SS18-209ENST00000578595 AGTPBP1Q9UPW5 1226 aa23.31■■□□□ 1.32
SS18-209ENST00000578595 USP17L10C9JJH3 530 aa23.3■■□□□ 1.32
SS18-209ENST00000578595 SMIM22K7EJ46 135 aa23.3■■□□□ 1.32
SS18-209ENST00000578595 TLR2O60603 784 aa23.3■■□□□ 1.32
SS18-209ENST00000578595 TREML2Q5T2D2 321 aa23.3■■□□□ 1.32
SS18-209ENST00000578595 PROCA1Q8NCQ7 364 aaPredicted RBP23.3■■□□□ 1.32
SS18-209ENST00000578595 WDR18Q9BV38 432 aa23.3■■□□□ 1.32
SS18-209ENST00000578595 NAPBQ9H115 298 aa23.3■■□□□ 1.32
SS18-209ENST00000578595 OSBPL3Q9H4L5 887 aa23.3■■□□□ 1.32
SS18-209ENST00000578595 EPB41L4AQ9HCS5 686 aaPredicted RBP23.3■■□□□ 1.32
SS18-209ENST00000578595 TRIM17Q9Y577 477 aa23.3■■□□□ 1.32
SS18-209ENST00000578595 MYH4Q9Y623 1939 aa23.29■■□□□ 1.32
SS18-209ENST00000578595 PATL2C9JE40 543 aaKnown RBP23.29■■□□□ 1.32
SS18-209ENST00000578595 PDE4AP27815 886 aa23.29■■□□□ 1.32
SS18-209ENST00000578595 CDK8P49336 464 aa23.29■■□□□ 1.32
SS18-209ENST00000578595 PABPC4Q13310 644 aaKnown RBP eCLIP23.29■■□□□ 1.32
SS18-209ENST00000578595 KIF22Q14807 665 aa23.29■■□□□ 1.32
SS18-209ENST00000578595 SEPT2Q15019 361 aa23.29■■□□□ 1.32
SS18-209ENST00000578595 GIMAP6Q6P9H5 292 aa23.29■■□□□ 1.32
SS18-209ENST00000578595 FAM227BQ96M60 508 aa23.29■■□□□ 1.32
SS18-209ENST00000578595 PNMA3Q9UL41 463 aa23.29■■□□□ 1.32
SS18-209ENST00000578595 A0A0D9SFI3 127 aa23.28■■□□□ 1.32
SS18-209ENST00000578595 BACE1P56817 501 aa23.28■■□□□ 1.32
SS18-209ENST00000578595 NMIQ13287 307 aaPredicted RBP23.28■■□□□ 1.32
SS18-209ENST00000578595 C16orf86Q6ZW13 317 aa23.28■■□□□ 1.32
SS18-209ENST00000578595 IFNL3Q8IZI9 196 aa23.28■■□□□ 1.32
SS18-209ENST00000578595 ABHD8Q96I13 439 aa23.28■■□□□ 1.32
SS18-209ENST00000578595 HELLSQ9NRZ9 838 aa23.28■■□□□ 1.32
SS18-209ENST00000578595 DIAPH3Q9NSV4 1193 aa23.28■■□□□ 1.32
SS18-209ENST00000578595 C19orf81C9J6K1 198 aa23.27■■□□□ 1.32
SS18-209ENST00000578595 AKR1B1P15121 316 aa23.27■■□□□ 1.32
SS18-209ENST00000578595 MKNK2Q9HBH9 465 aa23.27■■□□□ 1.32
SS18-209ENST00000578595 OSBPP22059 807 aa23.26■■□□□ 1.31
SS18-209ENST00000578595 IRX3P78415 501 aaPredicted RBP23.26■■□□□ 1.31
SS18-209ENST00000578595 MCMDC2Q4G0Z9 681 aa23.26■■□□□ 1.31
SS18-209ENST00000578595 SBK1Q52WX2 424 aa23.26■■□□□ 1.31
SS18-209ENST00000578595 USP17L2Q6R6M4 530 aa23.26■■□□□ 1.31
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