RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 RAET1EQ8TD07 263 aa18.72■□□□□ 0.59
SF3B3-215ENST00000577085 WDR18Q9BV38 432 aa18.72■□□□□ 0.59
SF3B3-215ENST00000577085 CABP5Q9NP86 173 aa18.72■□□□□ 0.59
SF3B3-215ENST00000577085 USP17L10C9JJH3 530 aa18.71■□□□□ 0.59
SF3B3-215ENST00000577085 MBD4O95243 580 aa18.71■□□□□ 0.59
SF3B3-215ENST00000577085 GH2P01242 217 aa18.71■□□□□ 0.59
SF3B3-215ENST00000577085 BCRP11274 1271 aa18.71■□□□□ 0.59
SF3B3-215ENST00000577085 BACE1P56817 501 aa18.71■□□□□ 0.59
SF3B3-215ENST00000577085 CERKLQ49MI3 558 aaPredicted RBP18.71■□□□□ 0.59
SF3B3-215ENST00000577085 LCORLQ8N3X6 602 aa18.71■□□□□ 0.59
SF3B3-215ENST00000577085 ARMC5Q96C12 935 aa18.71■□□□□ 0.59
SF3B3-215ENST00000577085 TRIM47Q96LD4 638 aa18.71■□□□□ 0.59
SF3B3-215ENST00000577085 FEZ1Q99689 392 aa18.71■□□□□ 0.59
SF3B3-215ENST00000577085 TMEM106CQ9BVX2 250 aa18.71■□□□□ 0.59
SF3B3-215ENST00000577085 ARMT1Q9H993 441 aa18.71■□□□□ 0.59
SF3B3-215ENST00000577085 PHIPQ8WWQ0 1821 aa18.71■□□□□ 0.59
SF3B3-215ENST00000577085 MYH1P12882 1939 aa18.7■□□□□ 0.58
SF3B3-215ENST00000577085 C19orf81C9J6K1 198 aa18.7■□□□□ 0.58
SF3B3-215ENST00000577085 IRX3P78415 501 aaPredicted RBP18.7■□□□□ 0.58
SF3B3-215ENST00000577085 RAB3GAP1Q15042 981 aa18.7■□□□□ 0.58
SF3B3-215ENST00000577085 UBE3CQ15386 1083 aa18.7■□□□□ 0.58
SF3B3-215ENST00000577085 ABCB5Q2M3G0 1257 aa18.7■□□□□ 0.58
SF3B3-215ENST00000577085 ANKRD13CQ8N6S4 541 aa18.7■□□□□ 0.58
SF3B3-215ENST00000577085 SDR42E1Q8WUS8 393 aa18.7■□□□□ 0.58
SF3B3-215ENST00000577085 CRBNQ96SW2 442 aa18.7■□□□□ 0.58
SF3B3-215ENST00000577085 SRRDQ9UH36 339 aa18.7■□□□□ 0.58
SF3B3-215ENST00000577085 PCDHB15Q9Y5E8 787 aa18.7■□□□□ 0.58
SF3B3-215ENST00000577085 MYPNQ86TC9 1320 aa18.7■□□□□ 0.58
SF3B3-215ENST00000577085 SIPA1L1O43166 1804 aa18.7■□□□□ 0.58
SF3B3-215ENST00000577085 MYCP01106 439 aaPredicted RBP18.69■□□□□ 0.58
SF3B3-215ENST00000577085 GCLCP48506 637 aaPredicted RBP18.69■□□□□ 0.58
SF3B3-215ENST00000577085 PLCD1P51178 756 aa18.69■□□□□ 0.58
SF3B3-215ENST00000577085 SH3D19Q5HYK7 790 aa18.69■□□□□ 0.58
SF3B3-215ENST00000577085 TATDN1Q6P1N9 297 aa18.69■□□□□ 0.58
SF3B3-215ENST00000577085 MPHOSPH10O00566 681 aaKnown RBP18.68■□□□□ 0.58
SF3B3-215ENST00000577085 TNPO2O14787 897 aaKnown RBP18.68■□□□□ 0.58
SF3B3-215ENST00000577085 JAG1P78504 1218 aa18.68■□□□□ 0.58
SF3B3-215ENST00000577085 SHROOM1Q2M3G4 852 aaPredicted RBP18.68■□□□□ 0.58
SF3B3-215ENST00000577085 SH3TC2Q8TF17 1288 aa18.68■□□□□ 0.58
SF3B3-215ENST00000577085 ASCC2Q9H1I8 757 aaPredicted RBP18.68■□□□□ 0.58
SF3B3-215ENST00000577085 DCP1AQ9NPI6 582 aaPredicted RBP18.68■□□□□ 0.58
SF3B3-215ENST00000577085 ATP8A2Q9NTI2 1148 aa18.68■□□□□ 0.58
SF3B3-215ENST00000577085 PTPRFP10586 1907 aa18.68■□□□□ 0.58
SF3B3-215ENST00000577085 NAV1Q8NEY1 1877 aa18.67■□□□□ 0.58
SF3B3-215ENST00000577085 ERC2O15083 957 aa18.67■□□□□ 0.58
SF3B3-215ENST00000577085 LRRFIP1Q32MZ4 808 aaKnown RBP18.67■□□□□ 0.58
SF3B3-215ENST00000577085 SLFNL1Q499Z3 407 aa18.67■□□□□ 0.58
SF3B3-215ENST00000577085 TSHZ3Q63HK5 1081 aa18.67■□□□□ 0.58
SF3B3-215ENST00000577085 USP17L2Q6R6M4 530 aa18.67■□□□□ 0.58
SF3B3-215ENST00000577085 COA7Q96BR5 231 aa18.67■□□□□ 0.58
SF3B3-215ENST00000577085 ZNF333Q96JL9 665 aa18.67■□□□□ 0.58
SF3B3-215ENST00000577085 BIN2Q9UBW5 565 aaPredicted RBP18.67■□□□□ 0.58
SF3B3-215ENST00000577085 SLC4A4Q9Y6R1 1079 aa18.67■□□□□ 0.58
SF3B3-215ENST00000577085 ZSWIM8A7E2V4 1837 aa18.66■□□□□ 0.58
SF3B3-215ENST00000577085 CTGFP29279 349 aa18.66■□□□□ 0.58
SF3B3-215ENST00000577085 USP14P54578 494 aa18.66■□□□□ 0.58
SF3B3-215ENST00000577085 ZYXQ15942 572 aaKnown RBP18.66■□□□□ 0.58
SF3B3-215ENST00000577085 FAM110CQ1W6H9 321 aa18.66■□□□□ 0.58
SF3B3-215ENST00000577085 SWAP70Q9UH65 585 aa18.66■□□□□ 0.58
SF3B3-215ENST00000577085 TTC41PQ6P2S7 1318 aa18.66■□□□□ 0.58
SF3B3-215ENST00000577085 HTTP42858 3142 aa18.66■□□□□ 0.58
SF3B3-215ENST00000577085 LOC285556D6RIA3 1793 aa18.65■□□□□ 0.58
SF3B3-215ENST00000577085 PRKAB2O43741 272 aa18.65■□□□□ 0.58
SF3B3-215ENST00000577085 GRK4P32298 578 aa18.65■□□□□ 0.58
SF3B3-215ENST00000577085 SHMT1P34896 483 aa18.65■□□□□ 0.58
SF3B3-215ENST00000577085 PRKCZQ05513 592 aa18.65■□□□□ 0.58
SF3B3-215ENST00000577085 KBTBD3Q8NAB2 608 aa18.65■□□□□ 0.58
SF3B3-215ENST00000577085 TAOK2Q9UL54 1235 aa18.65■□□□□ 0.58
SF3B3-215ENST00000577085 CENPFP49454 3210 aa18.64■□□□□ 0.57
SF3B3-215ENST00000577085 POTEFA5A3E0 1075 aa18.64■□□□□ 0.57
SF3B3-215ENST00000577085 ZFYP08048 801 aaPredicted RBP18.64■□□□□ 0.57
SF3B3-215ENST00000577085 HOXA7P31268 230 aaPredicted RBP18.64■□□□□ 0.57
SF3B3-215ENST00000577085 CCAR1Q8IX12 1150 aaKnown RBP18.64■□□□□ 0.57
SF3B3-215ENST00000577085 GLRX3O76003 335 aaKnown RBP18.63■□□□□ 0.57
SF3B3-215ENST00000577085 CYP2D6P10635 497 aa18.63■□□□□ 0.57
SF3B3-215ENST00000577085 UBXN2AP68543 259 aa18.63■□□□□ 0.57
SF3B3-215ENST00000577085 GABPAQ06546 454 aa18.63■□□□□ 0.57
SF3B3-215ENST00000577085 ANKRD45Q5TZF3 282 aa18.63■□□□□ 0.57
SF3B3-215ENST00000577085 SLAIN1Q8ND83 568 aa18.63■□□□□ 0.57
SF3B3-215ENST00000577085 GCC1Q96CN9 775 aa18.63■□□□□ 0.57
SF3B3-215ENST00000577085 PUS7LQ9H0K6 701 aaKnown RBP18.63■□□□□ 0.57
SF3B3-215ENST00000577085 DDX60LQ5H9U9 1706 aaKnown RBP18.63■□□□□ 0.57
SF3B3-215ENST00000577085 USP17L12C9JPN9 530 aa18.62■□□□□ 0.57
SF3B3-215ENST00000577085 USP17L21D6R901 530 aa18.62■□□□□ 0.57
SF3B3-215ENST00000577085 RNF113AO15541 343 aaKnown RBP18.62■□□□□ 0.57
SF3B3-215ENST00000577085 CHGBP05060 677 aa18.62■□□□□ 0.57
SF3B3-215ENST00000577085 MX1P20591 662 aa18.62■□□□□ 0.57
SF3B3-215ENST00000577085 FLT3LGP49771 235 aa18.62■□□□□ 0.57
SF3B3-215ENST00000577085 HERVK_113P62684 666 aa18.62■□□□□ 0.57
SF3B3-215ENST00000577085 AAMPQ13685 434 aa18.62■□□□□ 0.57
SF3B3-215ENST00000577085 GTF3C2Q8WUA4 911 aaPredicted RBP18.62■□□□□ 0.57
SF3B3-215ENST00000577085 APPBP2Q92624 585 aa18.62■□□□□ 0.57
SF3B3-215ENST00000577085 EMILIN3Q9NT22 766 aa18.62■□□□□ 0.57
SF3B3-215ENST00000577085 GABRQQ9UN88 632 aa18.62■□□□□ 0.57
SF3B3-215ENST00000577085 EN2P19622 333 aaPredicted RBP18.61■□□□□ 0.57
SF3B3-215ENST00000577085 SEPT2Q15019 361 aa18.61■□□□□ 0.57
SF3B3-215ENST00000577085 TMEM179Q6ZVK1 233 aa18.61■□□□□ 0.57
SF3B3-215ENST00000577085 SLC44A5Q8NCS7 719 aa18.61■□□□□ 0.57
SF3B3-215ENST00000577085 GPRC5AQ8NFJ5 357 aa18.61■□□□□ 0.57
SF3B3-215ENST00000577085 DYNLL2Q96FJ2 89 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms