RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 ZKSCAN4Q969J2 545 aaPredicted RBP10.18□□□□□ -0.78
NUP88-211ENST00000575976 CLMNQ96JQ2 1002 aa10.18□□□□□ -0.78
NUP88-211ENST00000575976 NBPF3Q9H094 633 aa10.18□□□□□ -0.78
NUP88-211ENST00000575976 ABT1Q9ULW3 272 aaKnown RBP10.18□□□□□ -0.78
NUP88-211ENST00000575976 TRPM7Q96QT4 1865 aa10.18□□□□□ -0.78
NUP88-211ENST00000575976 PAPPA2Q9BXP8 1791 aa10.18□□□□□ -0.78
NUP88-211ENST00000575976 SLC27A2O14975 620 aa10.17□□□□□ -0.78
NUP88-211ENST00000575976 CTNND1O60716 968 aaKnown RBP10.17□□□□□ -0.78
NUP88-211ENST00000575976 PRDM1O75626 825 aa10.17□□□□□ -0.78
NUP88-211ENST00000575976 REC8O95072 547 aa10.17□□□□□ -0.78
NUP88-211ENST00000575976 GDF11O95390 407 aa10.17□□□□□ -0.78
NUP88-211ENST00000575976 SLC3A2P08195 630 aaKnown RBP10.17□□□□□ -0.78
NUP88-211ENST00000575976 CYP21A2P08686 494 aa10.17□□□□□ -0.78
NUP88-211ENST00000575976 RASA1P20936 1047 aa10.17□□□□□ -0.78
NUP88-211ENST00000575976 CAP2P40123 477 aa10.17□□□□□ -0.78
NUP88-211ENST00000575976 ECE1P42892 770 aa10.17□□□□□ -0.78
NUP88-211ENST00000575976 VGLL4Q14135 290 aa10.17□□□□□ -0.78
NUP88-211ENST00000575976 SHROOM1Q2M3G4 852 aaPredicted RBP10.17□□□□□ -0.78
NUP88-211ENST00000575976 CERKLQ49MI3 558 aaPredicted RBP10.17□□□□□ -0.78
NUP88-211ENST00000575976 NOL9Q5SY16 702 aaKnown RBP10.17□□□□□ -0.78
NUP88-211ENST00000575976 TBC1D10CQ8IV04 446 aa10.17□□□□□ -0.78
NUP88-211ENST00000575976 SCYL3Q8IZE3 742 aa10.17□□□□□ -0.78
NUP88-211ENST00000575976 MKNK2Q9HBH9 465 aa10.17□□□□□ -0.78
NUP88-211ENST00000575976 TAOK2Q9UL54 1235 aa10.17□□□□□ -0.78
NUP88-211ENST00000575976 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.17□□□□□ -0.78
NUP88-211ENST00000575976 SNCAIPQ9Y6H5 919 aa10.17□□□□□ -0.78
NUP88-211ENST00000575976 TAF6LQ9Y6J9 622 aa10.17□□□□□ -0.78
NUP88-211ENST00000575976 UNCXA6NJT0 531 aa10.16□□□□□ -0.78
NUP88-211ENST00000575976 FGRP09769 529 aa10.16□□□□□ -0.78
NUP88-211ENST00000575976 AKR1B1P15121 316 aa10.16□□□□□ -0.78
NUP88-211ENST00000575976 PDE4BQ07343 736 aa10.16□□□□□ -0.78
NUP88-211ENST00000575976 MAPK8IP2Q13387 824 aaPredicted RBP10.16□□□□□ -0.78
NUP88-211ENST00000575976 RRP12Q5JTH9 1297 aaKnown RBP10.16□□□□□ -0.78
NUP88-211ENST00000575976 AKNAD1Q5T1N1 836 aa10.16□□□□□ -0.78
NUP88-211ENST00000575976 CREB3L3Q68CJ9 461 aa10.16□□□□□ -0.78
NUP88-211ENST00000575976 RGMBQ6NW40 437 aa10.16□□□□□ -0.78
NUP88-211ENST00000575976 CCDC84Q86UT8 332 aaPredicted RBP10.16□□□□□ -0.78
NUP88-211ENST00000575976 ZNF444Q8N0Y2 327 aaPredicted RBP10.16□□□□□ -0.78
NUP88-211ENST00000575976 NKX2-3Q8TAU0 364 aa10.16□□□□□ -0.78
NUP88-211ENST00000575976 STAG1Q8WVM7 1258 aa10.16□□□□□ -0.78
NUP88-211ENST00000575976 SLC10A4Q96EP9 437 aa10.16□□□□□ -0.78
NUP88-211ENST00000575976 USP26Q9BXU7 913 aa10.16□□□□□ -0.78
NUP88-211ENST00000575976 ELP3Q9H9T3 547 aa10.16□□□□□ -0.78
NUP88-211ENST00000575976 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.16□□□□□ -0.78
NUP88-211ENST00000575976 CSADQ9Y600 493 aa10.16□□□□□ -0.78
NUP88-211ENST00000575976 NEDD4P46934 1319 aa10.15□□□□□ -0.78
NUP88-211ENST00000575976 PDE4DIPQ5VU43 2346 aa10.15□□□□□ -0.78
NUP88-211ENST00000575976 MPHOSPH10O00566 681 aaKnown RBP10.15□□□□□ -0.78
NUP88-211ENST00000575976 EPB41L2O43491 1005 aaKnown RBP10.15□□□□□ -0.78
NUP88-211ENST00000575976 ORC4O43929 436 aa10.15□□□□□ -0.78
NUP88-211ENST00000575976 GH2P01242 217 aa10.15□□□□□ -0.78
NUP88-211ENST00000575976 GUCY1A2P33402 732 aa10.15□□□□□ -0.78
NUP88-211ENST00000575976 HSPA4P34932 840 aa10.15□□□□□ -0.78
NUP88-211ENST00000575976 ZNF157P51786 506 aaPredicted RBP10.15□□□□□ -0.78
NUP88-211ENST00000575976 ABCB5Q2M3G0 1257 aa10.15□□□□□ -0.78
NUP88-211ENST00000575976 FAM47AQ5JRC9 791 aa10.15□□□□□ -0.78
NUP88-211ENST00000575976 MFSD6Q6ZSS7 791 aa10.15□□□□□ -0.78
NUP88-211ENST00000575976 STOX1Q6ZVD7 989 aa10.15□□□□□ -0.78
NUP88-211ENST00000575976 CNKSR2Q8WXI2 1034 aa10.15□□□□□ -0.78
NUP88-211ENST00000575976 HHIPL1Q96JK4 782 aa10.15□□□□□ -0.78
NUP88-211ENST00000575976 CCDC17Q96LX7 622 aa10.15□□□□□ -0.78
NUP88-211ENST00000575976 RNF41Q9H4P4 317 aaPredicted RBP10.15□□□□□ -0.78
NUP88-211ENST00000575976 ZNF287Q9HBT7 754 aa10.15□□□□□ -0.78
NUP88-211ENST00000575976 CABP5Q9NP86 173 aa10.15□□□□□ -0.78
NUP88-211ENST00000575976 TOMM22Q9NS69 142 aa10.15□□□□□ -0.78
NUP88-211ENST00000575976 ZBTB21Q9ULJ3 1066 aa10.15□□□□□ -0.78
NUP88-211ENST00000575976 LAMB1P07942 1786 aa10.15□□□□□ -0.78
NUP88-211ENST00000575976 SPDYE5A6NIY4 337 aa10.14□□□□□ -0.79
NUP88-211ENST00000575976 B4E1Z4 1266 aa10.14□□□□□ -0.79
NUP88-211ENST00000575976 E7EWF7 191 aa10.14□□□□□ -0.79
NUP88-211ENST00000575976 TNRC18O15417 2968 aaPredicted RBP10.14□□□□□ -0.79
NUP88-211ENST00000575976 CA12O43570 354 aa10.14□□□□□ -0.79
NUP88-211ENST00000575976 RANBP6O60518 1105 aaKnown RBP10.14□□□□□ -0.79
NUP88-211ENST00000575976 ASNSP08243 561 aa10.14□□□□□ -0.79
NUP88-211ENST00000575976 PCP11498 1178 aaKnown RBP10.14□□□□□ -0.79
NUP88-211ENST00000575976 PTPRAP18433 802 aa10.14□□□□□ -0.79
NUP88-211ENST00000575976 GJA5P36382 358 aa10.14□□□□□ -0.79
NUP88-211ENST00000575976 TFAP4Q01664 338 aa10.14□□□□□ -0.79
NUP88-211ENST00000575976 SEPT2Q15019 361 aa10.14□□□□□ -0.79
NUP88-211ENST00000575976 RNF20Q5VTR2 975 aa10.14□□□□□ -0.79
NUP88-211ENST00000575976 CYP4F22Q6NT55 531 aa10.14□□□□□ -0.79
NUP88-211ENST00000575976 PAXIP1Q6ZW49 1069 aaPredicted RBP10.14□□□□□ -0.79
NUP88-211ENST00000575976 ERO1BQ86YB8 467 aa10.14□□□□□ -0.79
NUP88-211ENST00000575976 RASAL3Q86YV0 1011 aa10.14□□□□□ -0.79
NUP88-211ENST00000575976 RASEFQ8IZ41 740 aa10.14□□□□□ -0.79
NUP88-211ENST00000575976 OPTNQ96CV9 577 aa10.14□□□□□ -0.79
NUP88-211ENST00000575976 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.14□□□□□ -0.79
NUP88-211ENST00000575976 PICK1Q9NRD5 415 aa10.14□□□□□ -0.79
NUP88-211ENST00000575976 GINM1Q9NU53 330 aa10.14□□□□□ -0.79
NUP88-211ENST00000575976 TSPY2A6NKD2 308 aa10.13□□□□□ -0.79
NUP88-211ENST00000575976 USP17L5A8MUK1 530 aa10.13□□□□□ -0.79
NUP88-211ENST00000575976 EIF5BO60841 1220 aaKnown RBP10.13□□□□□ -0.79
NUP88-211ENST00000575976 SLC10A3P09131 477 aa10.13□□□□□ -0.79
NUP88-211ENST00000575976 TSPY3P0CV98 308 aa10.13□□□□□ -0.79
NUP88-211ENST00000575976 TSPY8P0CW00 308 aa10.13□□□□□ -0.79
NUP88-211ENST00000575976 MKRN3Q13064 507 aaKnown RBP10.13□□□□□ -0.79
NUP88-211ENST00000575976 RAB3GAP1Q15042 981 aa10.13□□□□□ -0.79
NUP88-211ENST00000575976 TMEM179Q6ZVK1 233 aa10.13□□□□□ -0.79
NUP88-211ENST00000575976 CLEC10AQ8IUN9 316 aa10.13□□□□□ -0.79
NUP88-211ENST00000575976 NEDD1Q8NHV4 660 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms