RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ZNF853P0CG23 659 aa20.59■□□□□ 0.89
VPS53-218ENST00000575207 HERVK_113P62684 666 aa20.59■□□□□ 0.89
VPS53-218ENST00000575207 ERVK-9P63128 1117 aa20.59■□□□□ 0.89
VPS53-218ENST00000575207 ERVK-24P63145 666 aa20.59■□□□□ 0.89
VPS53-218ENST00000575207 SKIV2LQ15477 1246 aaKnown RBP20.59■□□□□ 0.89
VPS53-218ENST00000575207 CCDC57Q2TAC2 916 aa20.59■□□□□ 0.89
VPS53-218ENST00000575207 CCAR1Q8IX12 1150 aaKnown RBP20.59■□□□□ 0.89
VPS53-218ENST00000575207 IDI2Q9BXS1 227 aa20.59■□□□□ 0.89
VPS53-218ENST00000575207 MYH16Q9H6N6 1097 aa20.59■□□□□ 0.89
VPS53-218ENST00000575207 CD320Q9NPF0 282 aa20.59■□□□□ 0.89
VPS53-218ENST00000575207 SPTBN4Q9H254 2564 aa20.58■□□□□ 0.89
VPS53-218ENST00000575207 HOXC6P09630 235 aa20.58■□□□□ 0.89
VPS53-218ENST00000575207 CYBAP13498 195 aa20.58■□□□□ 0.89
VPS53-218ENST00000575207 CAVIN4Q5BKX8 364 aa20.58■□□□□ 0.89
VPS53-218ENST00000575207 TAF7LQ5H9L4 462 aa20.58■□□□□ 0.89
VPS53-218ENST00000575207 MICALL1Q8N3F8 863 aa20.58■□□□□ 0.89
VPS53-218ENST00000575207 FERMT2Q96AC1 680 aa20.58■□□□□ 0.89
VPS53-218ENST00000575207 SLC28A3Q9HAS3 691 aa20.58■□□□□ 0.89
VPS53-218ENST00000575207 C5orf42Q9H799 3197 aa20.58■□□□□ 0.88
VPS53-218ENST00000575207 RGS3P49796 1198 aa20.57■□□□□ 0.88
VPS53-218ENST00000575207 TMEM240Q5SV17 173 aa20.57■□□□□ 0.88
VPS53-218ENST00000575207 C16orf59Q7L2K0 433 aa20.57■□□□□ 0.88
VPS53-218ENST00000575207 DDTLA6NHG4 134 aaPredicted RBP20.56■□□□□ 0.88
VPS53-218ENST00000575207 POU3F3P20264 500 aaPredicted RBP20.56■□□□□ 0.88
VPS53-218ENST00000575207 CYP2C19P33261 490 aa20.56■□□□□ 0.88
VPS53-218ENST00000575207 ATP2B2Q01814 1243 aa20.56■□□□□ 0.88
VPS53-218ENST00000575207 DIXDC1Q155Q3 683 aa20.56■□□□□ 0.88
VPS53-218ENST00000575207 LMBR1LQ6UX01 489 aa20.56■□□□□ 0.88
VPS53-218ENST00000575207 TMEM39AQ9NV64 488 aa20.56■□□□□ 0.88
VPS53-218ENST00000575207 ZNF318Q5VUA4 2279 aa20.55■□□□□ 0.88
VPS53-218ENST00000575207 TBC1D12O60347 775 aa20.55■□□□□ 0.88
VPS53-218ENST00000575207 LRRC41Q15345 812 aa20.55■□□□□ 0.88
VPS53-218ENST00000575207 CCDC174Q6PII3 467 aa20.55■□□□□ 0.88
VPS53-218ENST00000575207 C8orf58Q8NAV2 365 aa20.55■□□□□ 0.88
VPS53-218ENST00000575207 UIMC1Q96RL1 719 aa20.55■□□□□ 0.88
VPS53-218ENST00000575207 OSBPL5Q9H0X9 879 aaPredicted RBP20.55■□□□□ 0.88
VPS53-218ENST00000575207 NKX2-4Q9H2Z4 354 aa20.55■□□□□ 0.88
VPS53-218ENST00000575207 ZSCAN29Q8IWY8 852 aaPredicted RBP20.54■□□□□ 0.88
VPS53-218ENST00000575207 SLC44A5Q8NCS7 719 aa20.54■□□□□ 0.88
VPS53-218ENST00000575207 LINS1Q8NG48 757 aa20.54■□□□□ 0.88
VPS53-218ENST00000575207 GTF3C2Q8WUA4 911 aaPredicted RBP20.54■□□□□ 0.88
VPS53-218ENST00000575207 RFX7Q2KHR2 1363 aa20.54■□□□□ 0.88
VPS53-218ENST00000575207 GLRX3O76003 335 aaKnown RBP20.53■□□□□ 0.88
VPS53-218ENST00000575207 TIMP1P01033 207 aa20.53■□□□□ 0.88
VPS53-218ENST00000575207 TOX2Q96NM4 488 aa20.53■□□□□ 0.88
VPS53-218ENST00000575207 PHF24Q9UPV7 400 aa20.53■□□□□ 0.88
VPS53-218ENST00000575207 SLC15A5A6NIM6 579 aa20.52■□□□□ 0.88
VPS53-218ENST00000575207 SEPT4O43236 478 aa20.52■□□□□ 0.88
VPS53-218ENST00000575207 PQBP1O60828 265 aaKnown RBP20.52■□□□□ 0.88
VPS53-218ENST00000575207 FAAP100Q0VG06 881 aa20.52■□□□□ 0.88
VPS53-218ENST00000575207 PPIGQ13427 754 aaKnown RBP eCLIP20.52■□□□□ 0.881e-7■■□□□ 13.2
VPS53-218ENST00000575207 MFSD5Q6N075 450 aa20.52■□□□□ 0.88
VPS53-218ENST00000575207 WDR66Q8TBY9 1149 aa20.52■□□□□ 0.88
VPS53-218ENST00000575207 PUS3Q9BZE2 481 aaKnown RBP20.52■□□□□ 0.88
VPS53-218ENST00000575207 YBX2Q9Y2T7 364 aaKnown RBP20.52■□□□□ 0.88
VPS53-218ENST00000575207 USP17L5A8MUK1 530 aa20.51■□□□□ 0.87
VPS53-218ENST00000575207 MYCNP04198 464 aaPredicted RBP20.51■□□□□ 0.87
VPS53-218ENST00000575207 EPHA10Q5JZY3 1008 aa20.51■□□□□ 0.87
VPS53-218ENST00000575207 ANO1Q5XXA6 986 aa20.51■□□□□ 0.87
VPS53-218ENST00000575207 ANKRD33Q7Z3H0 272 aa20.51■□□□□ 0.87
VPS53-218ENST00000575207 NPLOC4Q8TAT6 608 aa20.51■□□□□ 0.87
VPS53-218ENST00000575207 PHOX2BQ99453 314 aa20.51■□□□□ 0.87
VPS53-218ENST00000575207 MTCH2Q9Y6C9 303 aa20.51■□□□□ 0.87
VPS53-218ENST00000575207 MROH5Q6ZUA9 1318 aa20.51■□□□□ 0.87
VPS53-218ENST00000575207 ALADP13716 330 aa20.5■□□□□ 0.87
VPS53-218ENST00000575207 PTPREP23469 700 aa20.5■□□□□ 0.87
VPS53-218ENST00000575207 CSPP1Q1MSJ5 1256 aa20.5■□□□□ 0.87
VPS53-218ENST00000575207 HLA-CQ95604 372 aa20.5■□□□□ 0.87
VPS53-218ENST00000575207 CWC22Q9HCG8 908 aaKnown RBP20.5■□□□□ 0.87
VPS53-218ENST00000575207 SLC4A2P04920 1241 aa20.49■□□□□ 0.87
VPS53-218ENST00000575207 GRB14Q14449 540 aa20.49■□□□□ 0.87
VPS53-218ENST00000575207 G2E3Q7L622 706 aa20.49■□□□□ 0.87
VPS53-218ENST00000575207 PAGR1Q9BTK6 254 aa20.49■□□□□ 0.87
VPS53-218ENST00000575207 WDR18Q9BV38 432 aa20.49■□□□□ 0.87
VPS53-218ENST00000575207 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.49■□□□□ 0.87
VPS53-218ENST00000575207 AS3MTQ9HBK9 375 aa20.49■□□□□ 0.87
VPS53-218ENST00000575207 IFT57Q9NWB7 429 aa20.49■□□□□ 0.87
VPS53-218ENST00000575207 CACNA1BQ00975 2339 aa20.49■□□□□ 0.87
VPS53-218ENST00000575207 BRWD1Q9NSI6 2320 aa20.49■□□□□ 0.87
VPS53-218ENST00000575207 ZNF521Q96K83 1311 aa20.49■□□□□ 0.87
VPS53-218ENST00000575207 BACE1P56817 501 aa20.48■□□□□ 0.87
VPS53-218ENST00000575207 PSRC1Q6PGN9 363 aaPredicted RBP20.48■□□□□ 0.87
VPS53-218ENST00000575207 ZNF365Q70YC5 407 aa20.48■□□□□ 0.87
VPS53-218ENST00000575207 TMOD4Q9NZQ9 345 aa20.48■□□□□ 0.87
VPS53-218ENST00000575207 TBX21Q9UL17 535 aa20.48■□□□□ 0.87
VPS53-218ENST00000575207 KIF16BQ96L93 1317 aa20.48■□□□□ 0.87
VPS53-218ENST00000575207 SLC5A1P13866 664 aa20.47■□□□□ 0.87
VPS53-218ENST00000575207 PRDX5P30044 214 aa20.47■□□□□ 0.87
VPS53-218ENST00000575207 CAP2P40123 477 aa20.47■□□□□ 0.87
VPS53-218ENST00000575207 CCNA1P78396 465 aa20.47■□□□□ 0.87
VPS53-218ENST00000575207 MTMR2Q13614 643 aa20.47■□□□□ 0.87
VPS53-218ENST00000575207 OLFML2BQ68BL8 750 aa20.47■□□□□ 0.87
VPS53-218ENST00000575207 CCDC146Q8IYE0 955 aa20.47■□□□□ 0.87
VPS53-218ENST00000575207 GJD3Q8N144 294 aa20.47■□□□□ 0.87
VPS53-218ENST00000575207 DNAAF4Q8WXU2 420 aa20.47■□□□□ 0.87
VPS53-218ENST00000575207 DDX4Q9NQI0 724 aaKnown RBP20.47■□□□□ 0.87
VPS53-218ENST00000575207 NDUFB9Q9Y6M9 179 aa20.47■□□□□ 0.87
VPS53-218ENST00000575207 CACNA1GO43497 2377 aa20.46■□□□□ 0.87
VPS53-218ENST00000575207 DCDC2CA8MYV0 355 aa20.46■□□□□ 0.87
VPS53-218ENST00000575207 GTPBP6O43824 516 aaPredicted RBP20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms