RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 CERKLQ49MI3 558 aaPredicted RBP21.58■■□□□ 1.05
CCDC40-213ENST00000574933 TBC1D10CQ8IV04 446 aa21.58■■□□□ 1.05
CCDC40-213ENST00000574933 SCYL3Q8IZE3 742 aa21.58■■□□□ 1.05
CCDC40-213ENST00000574933 RNF41Q9H4P4 317 aaPredicted RBP21.58■■□□□ 1.05
CCDC40-213ENST00000574933 VGLL4Q14135 290 aa21.57■■□□□ 1.04
CCDC40-213ENST00000574933 TSGA10IPQ3SY00 556 aa21.57■■□□□ 1.04
CCDC40-213ENST00000574933 CSADQ9Y600 493 aa21.57■■□□□ 1.04
CCDC40-213ENST00000574933 SNCAIPQ9Y6H5 919 aa21.57■■□□□ 1.04
CCDC40-213ENST00000574933 SLC27A2O14975 620 aa21.56■■□□□ 1.04
CCDC40-213ENST00000574933 ASNSP08243 561 aa21.56■■□□□ 1.04
CCDC40-213ENST00000574933 HSPA4P34932 840 aa21.56■■□□□ 1.04
CCDC40-213ENST00000574933 CREB3L3Q68CJ9 461 aa21.56■■□□□ 1.04
CCDC40-213ENST00000574933 MFSD6Q6ZSS7 791 aa21.56■■□□□ 1.04
CCDC40-213ENST00000574933 ZKSCAN4Q969J2 545 aaPredicted RBP21.56■■□□□ 1.04
CCDC40-213ENST00000574933 CLMNQ96JQ2 1002 aa21.56■■□□□ 1.04
CCDC40-213ENST00000574933 MKNK2Q9HBH9 465 aa21.56■■□□□ 1.04
CCDC40-213ENST00000574933 PLIN4Q96Q06 1357 aa21.56■■□□□ 1.04
CCDC40-213ENST00000574933 RASSF10A6NK89 507 aa21.55■■□□□ 1.04
CCDC40-213ENST00000574933 SEC24BO95487 1268 aa21.55■■□□□ 1.04
CCDC40-213ENST00000574933 HSPA6P17066 643 aa21.55■■□□□ 1.04
CCDC40-213ENST00000574933 JAG1P78504 1218 aa21.55■■□□□ 1.04
CCDC40-213ENST00000574933 ABCB5Q2M3G0 1257 aa21.55■■□□□ 1.04
CCDC40-213ENST00000574933 RNF20Q5VTR2 975 aa21.55■■□□□ 1.04
CCDC40-213ENST00000574933 ZBTB21Q9ULJ3 1066 aa21.55■■□□□ 1.04
CCDC40-213ENST00000574933 AKR1B1P15121 316 aa21.54■■□□□ 1.04
CCDC40-213ENST00000574933 RGMBQ6NW40 437 aa21.54■■□□□ 1.04
CCDC40-213ENST00000574933 ZNF444Q8N0Y2 327 aaPredicted RBP21.54■■□□□ 1.04
CCDC40-213ENST00000574933 CNNM2Q9H8M5 875 aa21.54■■□□□ 1.04
CCDC40-213ENST00000574933 INCENPQ9NQS7 918 aa21.54■■□□□ 1.04
CCDC40-213ENST00000574933 ABT1Q9ULW3 272 aaKnown RBP21.54■■□□□ 1.04
CCDC40-213ENST00000574933 SPDYE5A6NIY4 337 aa21.53■■□□□ 1.04
CCDC40-213ENST00000574933 PRDM1O75626 825 aa21.53■■□□□ 1.04
CCDC40-213ENST00000574933 GDF11O95390 407 aa21.53■■□□□ 1.04
CCDC40-213ENST00000574933 PTPRAP18433 802 aa21.53■■□□□ 1.04
CCDC40-213ENST00000574933 GUCY1A2P33402 732 aa21.53■■□□□ 1.04
CCDC40-213ENST00000574933 TMEM179Q6ZVK1 233 aa21.53■■□□□ 1.04
CCDC40-213ENST00000574933 ERO1BQ86YB8 467 aa21.53■■□□□ 1.04
CCDC40-213ENST00000574933 STK11IPQ8N1F8 1099 aa21.53■■□□□ 1.04
CCDC40-213ENST00000574933 NEDD1Q8NHV4 660 aa21.53■■□□□ 1.04
CCDC40-213ENST00000574933 SLC10A4Q96EP9 437 aa21.53■■□□□ 1.04
CCDC40-213ENST00000574933 TBC1D2Q9BYX2 928 aa21.53■■□□□ 1.04
CCDC40-213ENST00000574933 CABP5Q9NP86 173 aa21.53■■□□□ 1.04
CCDC40-213ENST00000574933 TAF6LQ9Y6J9 622 aa21.53■■□□□ 1.04
CCDC40-213ENST00000574933 NEDD4P46934 1319 aa21.53■■□□□ 1.04
CCDC40-213ENST00000574933 E7EWF7 191 aa21.52■■□□□ 1.04
CCDC40-213ENST00000574933 GH2P01242 217 aa21.52■■□□□ 1.04
CCDC40-213ENST00000574933 PPATQ06203 517 aa21.52■■□□□ 1.04
CCDC40-213ENST00000574933 SHROOM1Q2M3G4 852 aaPredicted RBP21.52■■□□□ 1.04
CCDC40-213ENST00000574933 STOX1Q6ZVD7 989 aa21.52■■□□□ 1.04
CCDC40-213ENST00000574933 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.52■■□□□ 1.04
CCDC40-213ENST00000574933 KRT23Q9C075 422 aa21.52■■□□□ 1.04
CCDC40-213ENST00000574933 PICK1Q9NRD5 415 aa21.52■■□□□ 1.04
CCDC40-213ENST00000574933 IGKV6D-41A0A0C4DH26 115 aa21.51■■□□□ 1.03
CCDC40-213ENST00000574933 RASEFQ8IZ41 740 aa21.51■■□□□ 1.03
CCDC40-213ENST00000574933 ESR2Q92731 530 aa21.51■■□□□ 1.03
CCDC40-213ENST00000574933 BACH2Q9BYV9 841 aa21.51■■□□□ 1.03
CCDC40-213ENST00000574933 ELP3Q9H9T3 547 aa21.51■■□□□ 1.03
CCDC40-213ENST00000574933 USP17L5A8MUK1 530 aa21.5■■□□□ 1.03
CCDC40-213ENST00000574933 SLC10A3P09131 477 aa21.5■■□□□ 1.03
CCDC40-213ENST00000574933 ZKSCAN1P17029 563 aaPredicted RBP21.5■■□□□ 1.03
CCDC40-213ENST00000574933 TFAP4Q01664 338 aa21.5■■□□□ 1.03
CCDC40-213ENST00000574933 PPIL2Q13356 520 aa21.5■■□□□ 1.03
CCDC40-213ENST00000574933 DEFB115Q30KQ5 88 aa21.5■■□□□ 1.03
CCDC40-213ENST00000574933 RASAL3Q86YV0 1011 aa21.5■■□□□ 1.03
CCDC40-213ENST00000574933 CCDC102AQ96A19 550 aa21.5■■□□□ 1.03
CCDC40-213ENST00000574933 IL17RAQ96F46 866 aa21.5■■□□□ 1.03
CCDC40-213ENST00000574933 WNK4Q96J92 1243 aa21.5■■□□□ 1.03
CCDC40-213ENST00000574933 WDR18Q9BV38 432 aa21.5■■□□□ 1.03
CCDC40-213ENST00000574933 TCP11L1Q9NUJ3 509 aa21.5■■□□□ 1.03
CCDC40-213ENST00000574933 LOC285556D6RIA3 1793 aa21.49■■□□□ 1.03
CCDC40-213ENST00000574933 THSD7BQ9C0I4 1608 aa21.49■■□□□ 1.03
CCDC40-213ENST00000574933 RANBP6O60518 1105 aaKnown RBP21.49■■□□□ 1.03
CCDC40-213ENST00000574933 ZBTB48P10074 688 aaPredicted RBP21.49■■□□□ 1.03
CCDC40-213ENST00000574933 MCCP23508 829 aa21.49■■□□□ 1.03
CCDC40-213ENST00000574933 NOVP48745 357 aa21.49■■□□□ 1.03
CCDC40-213ENST00000574933 ZNF157P51786 506 aaPredicted RBP21.49■■□□□ 1.03
CCDC40-213ENST00000574933 TRDNQ13061 729 aa21.49■■□□□ 1.03
CCDC40-213ENST00000574933 KRT32Q14532 448 aa21.49■■□□□ 1.03
CCDC40-213ENST00000574933 SEPT2Q15019 361 aa21.49■■□□□ 1.03
CCDC40-213ENST00000574933 SPRYD7Q5W111 196 aa21.49■■□□□ 1.03
CCDC40-213ENST00000574933 NCOA7Q8NI08 942 aa21.49■■□□□ 1.03
CCDC40-213ENST00000574933 NKX2-3Q8TAU0 364 aa21.49■■□□□ 1.03
CCDC40-213ENST00000574933 KANSL2Q9H9L4 492 aa21.49■■□□□ 1.03
CCDC40-213ENST00000574933 KCNH4Q9UQ05 1017 aa21.49■■□□□ 1.03
CCDC40-213ENST00000574933 AFG3L2Q9Y4W6 797 aa21.49■■□□□ 1.03
CCDC40-213ENST00000574933 TSPY2A6NKD2 308 aa21.48■■□□□ 1.03
CCDC40-213ENST00000574933 FAM155AB1AL88 458 aaPredicted RBP21.48■■□□□ 1.03
CCDC40-213ENST00000574933 B4E1Z4 1266 aa21.48■■□□□ 1.03
CCDC40-213ENST00000574933 TSPY3P0CV98 308 aa21.48■■□□□ 1.03
CCDC40-213ENST00000574933 TSPY8P0CW00 308 aa21.48■■□□□ 1.03
CCDC40-213ENST00000574933 GJA5P36382 358 aa21.48■■□□□ 1.03
CCDC40-213ENST00000574933 FAM47AQ5JRC9 791 aa21.48■■□□□ 1.03
CCDC40-213ENST00000574933 RRP12Q5JTH9 1297 aaKnown RBP21.48■■□□□ 1.03
CCDC40-213ENST00000574933 OPTNQ96CV9 577 aa21.48■■□□□ 1.03
CCDC40-213ENST00000574933 AS3MTQ9HBK9 375 aa21.48■■□□□ 1.03
CCDC40-213ENST00000574933 TOMM22Q9NS69 142 aa21.48■■□□□ 1.03
CCDC40-213ENST00000574933 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.48■■□□□ 1.03
CCDC40-213ENST00000574933 SNX14Q9Y5W7 946 aa21.48■■□□□ 1.03
CCDC40-213ENST00000574933 MPHOSPH10O00566 681 aaKnown RBP21.47■■□□□ 1.03
CCDC40-213ENST00000574933 KDM4AO75164 1064 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms