RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 TSHZ1Q6ZSZ6 1077 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 STRA8Q7Z7C7 330 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 FAM35AQ86V20 835 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 TRIM22Q8IYM9 498 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 CHPFQ8IZ52 775 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 MYO1HQ8N1T3 1032 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 WDR66Q8TBY9 1149 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 GPBAR1Q8TDU6 330 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 LEO1Q8WVC0 666 aaPredicted RBP2.76□□□□□ -1.97
CHD3-217ENST00000574022 DDX1Q92499 740 aaKnown RBP2.76□□□□□ -1.97
CHD3-217ENST00000574022 ELMO3Q96BJ8 720 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 PLPPR2Q96GM1 343 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 EXOC2Q96KP1 924 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 DHRS1Q96LJ7 313 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 ZFP42Q96MM3 310 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 MRPL4Q9BYD3 311 aaKnown RBP2.76□□□□□ -1.97
CHD3-217ENST00000574022 ARHGEF4Q9NR80 690 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 CACNA2D2Q9NY47 1150 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 SLC5A4Q9NY91 659 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 ZIM2Q9NZV7 527 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 LRP2BPQ9P2M1 347 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 KLHL3Q9UH77 587 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 DNMT3LQ9UJW3 386 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 ZNF214Q9UL59 606 aaPredicted RBP2.76□□□□□ -1.97
CHD3-217ENST00000574022 ATXN7L1Q9ULK2 861 aaPredicted RBP2.76□□□□□ -1.97
CHD3-217ENST00000574022 TRIM33Q9UPN9 1127 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 TACC3Q9Y6A5 838 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 COMMD10Q9Y6G5 202 aa2.76□□□□□ -1.97
CHD3-217ENST00000574022 PHLDB1Q86UU1 1377 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 ANKRD34BA5PLL1 514 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 AKAP10O43572 662 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 DNAJA2O60884 412 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 NPTXRO95502 500 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 SCGB1D2O95969 90 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 TP53P04637 393 aaPredicted RBP2.75□□□□□ -1.97
CHD3-217ENST00000574022 CYP11A1P05108 521 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 MYL1P05976 194 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 PGRP06401 933 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 RAG1P15918 1043 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 SELPP16109 830 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 SDSP20132 328 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 FGFR3P22607 806 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 CDC25BP30305 580 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 ARL4DP49703 201 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 NEK2P51955 445 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 NEK4P51957 841 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 ZNF143P52747 638 aaPredicted RBP2.75□□□□□ -1.97
CHD3-217ENST00000574022 HNRNPUQ00839 825 aaKnown RBP eCLIP2.75□□□□□ -1.97
CHD3-217ENST00000574022 MAP7Q14244 749 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 POU4F3Q15319 338 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 YOD1Q5VVQ6 348 aaPredicted RBP2.75□□□□□ -1.97
CHD3-217ENST00000574022 RNF219Q5W0B1 726 aaPredicted RBP2.75□□□□□ -1.97
CHD3-217ENST00000574022 NSMFQ6X4W1 530 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 TRIM67Q6ZTA4 783 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 CYFIP1Q7L576 1253 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 TRIM46Q7Z4K8 759 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 NECAB2Q7Z6G3 386 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 SYT9Q86SS6 491 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 C14orf80Q86SX3 495 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 PPM1KQ8N3J5 372 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 LRRN4CLQ8ND94 238 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 PPP1R14AQ96A00 147 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 MTMR8Q96EF0 704 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 CORO1BQ9BR76 489 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 AARSD1Q9BTE6 412 aaKnown RBP2.75□□□□□ -1.97
CHD3-217ENST00000574022 ASPSCR1Q9BZE9 553 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 SMG9Q9H0W8 520 aaKnown RBP2.75□□□□□ -1.97
CHD3-217ENST00000574022 SOX17Q9H6I2 414 aaPredicted RBP2.75□□□□□ -1.97
CHD3-217ENST00000574022 ARNT2Q9HBZ2 717 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 PHF24Q9UPV7 400 aa2.75□□□□□ -1.97
CHD3-217ENST00000574022 E2F8A0AVK6 867 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 SLC35F4A4IF30 521 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 GOLGA6CA6NDK9 693 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 GOLGA6BA6NDN3 693 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 DCDC2CA8MYV0 355 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 H3BRJ5 948 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 PRODHO43272 600 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 BRINP1O60477 761 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 SIN3BO75182 1162 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 ITGAVP06756 1048 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 GOLGA6DP0CG33 693 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 FGFR1P11362 822 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 PABPC1P11940 636 aaKnown RBP2.74□□□□□ -1.97
CHD3-217ENST00000574022 EPHA1P21709 976 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 GRK4P32298 578 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 PMS1P54277 932 aaKnown RBP2.74□□□□□ -1.97
CHD3-217ENST00000574022 ETF1P62495 437 aaKnown RBP2.74□□□□□ -1.97
CHD3-217ENST00000574022 PPP2R2AP63151 447 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 SUMO1P63165 101 aaKnown RBP2.74□□□□□ -1.97
CHD3-217ENST00000574022 CTBSQ01459 385 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 PTSQ03393 145 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 C19orf57Q0VDD7 668 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 MTMR1Q13613 665 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 SAFB2Q14151 953 aaKnown RBP eCLIP2.74□□□□□ -1.97
CHD3-217ENST00000574022 STAT4Q14765 748 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 BRD3Q15059 726 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 PCBP1Q15365 356 aaKnown RBP eCLIP2.74□□□□□ -1.97
CHD3-217ENST00000574022 DHCR24Q15392 516 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 SYCP2LQ5T4T6 812 aa2.74□□□□□ -1.97
CHD3-217ENST00000574022 HEATR6Q6AI08 1181 aaKnown RBP2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms