RNA–Protein interactions for RNA: ENST00000573600.5

CTDNEP1-208, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CTDNEP1, Length 1,724 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-208ENST00000573600 PSME4Q14997 1843 aa33.91■■■■□ 3.02
CTDNEP1-208ENST00000573600 ECM29Q5VYK3 1845 aa33.91■■■■□ 3.02
CTDNEP1-208ENST00000573600 FMNL1O95466 1100 aaPredicted RBP33.9■■■■□ 3.02
CTDNEP1-208ENST00000573600 WASF1Q92558 559 aa33.9■■■■□ 3.02
CTDNEP1-208ENST00000573600 ZDHHC15Q96MV8 337 aa33.9■■■■□ 3.02
CTDNEP1-208ENST00000573600 USP40Q9NVE5 1235 aa33.9■■■■□ 3.02
CTDNEP1-208ENST00000573600 UBE2HP62256 183 aa33.9■■■■□ 3.02
CTDNEP1-208ENST00000573600 TFAP4Q01664 338 aa33.9■■■■□ 3.02
CTDNEP1-208ENST00000573600 TCP11L1Q9NUJ3 509 aa33.9■■■■□ 3.02
CTDNEP1-208ENST00000573600 RBM28Q9NW13 759 aaKnown RBP33.9■■■■□ 3.02
CTDNEP1-208ENST00000573600 PIM2Q9P1W9 311 aa33.9■■■■□ 3.02
CTDNEP1-208ENST00000573600 ATF5Q9Y2D1 282 aaPredicted RBP33.9■■■■□ 3.02
CTDNEP1-208ENST00000573600 ELP1O95163 1332 aa33.89■■■■□ 3.02
CTDNEP1-208ENST00000573600 ATL3Q6DD88 541 aa33.89■■■■□ 3.02
CTDNEP1-208ENST00000573600 TRIM22Q8IYM9 498 aa33.89■■■■□ 3.02
CTDNEP1-208ENST00000573600 ALG1Q9BT22 464 aa33.89■■■■□ 3.02
CTDNEP1-208ENST00000573600 ADAMTSL1Q8N6G6 1762 aa33.88■■■■□ 3.01
CTDNEP1-208ENST00000573600 APOBEC3HQ6NTF7 200 aaKnown RBP33.88■■■■□ 3.01
CTDNEP1-208ENST00000573600 FAM173BQ6P4H8 233 aa33.88■■■■□ 3.01
CTDNEP1-208ENST00000573600 DGKHQ86XP1 1220 aa33.88■■■■□ 3.01
CTDNEP1-208ENST00000573600 PHKBQ93100 1093 aa33.88■■■■□ 3.01
CTDNEP1-208ENST00000573600 CFAP45Q9UL16 551 aa33.88■■■■□ 3.01
CTDNEP1-208ENST00000573600 CAVIN1Q6NZI2 390 aaKnown RBP33.87■■■■□ 3.01
CTDNEP1-208ENST00000573600 TTC6Q86TZ1 520 aa33.87■■■■□ 3.01
CTDNEP1-208ENST00000573600 KIAA0825Q8IV33 1275 aa33.87■■■■□ 3.01
CTDNEP1-208ENST00000573600 ANKS1AQ92625 1134 aa33.87■■■■□ 3.01
CTDNEP1-208ENST00000573600 GADD45BO75293 160 aaPredicted RBP33.87■■■■□ 3.01
CTDNEP1-208ENST00000573600 WDHD1O75717 1129 aaPredicted RBP33.87■■■■□ 3.01
CTDNEP1-208ENST00000573600 TSPY3P0CV98 308 aa33.87■■■■□ 3.01
CTDNEP1-208ENST00000573600 TSPY8P0CW00 308 aa33.87■■■■□ 3.01
CTDNEP1-208ENST00000573600 CDK8P49336 464 aa33.87■■■■□ 3.01
CTDNEP1-208ENST00000573600 GUCY1B3Q02153 619 aa33.87■■■■□ 3.01
CTDNEP1-208ENST00000573600 CDC42EP5Q6NZY7 148 aa33.87■■■■□ 3.01
CTDNEP1-208ENST00000573600 SLC26A6Q9BXS9 759 aa33.87■■■■□ 3.01
CTDNEP1-208ENST00000573600 TROAPQ12815 778 aa33.86■■■■□ 3.01
CTDNEP1-208ENST00000573600 SERPINA10Q9UK55 444 aa33.86■■■■□ 3.01
CTDNEP1-208ENST00000573600 RASA1P20936 1047 aa33.85■■■■□ 3.01
CTDNEP1-208ENST00000573600 PICALMQ13492 652 aa33.85■■■■□ 3.01
CTDNEP1-208ENST00000573600 NMT2O60551 498 aa33.84■■■■□ 3.01
CTDNEP1-208ENST00000573600 CRACR2BQ8N4Y2 399 aaPredicted RBP33.84■■■■□ 3.01
CTDNEP1-208ENST00000573600 ZNF396Q96N95 335 aaPredicted RBP33.84■■■■□ 3.01
CTDNEP1-208ENST00000573600 YDJCA8MPS7 323 aa33.84■■■■□ 3.01
CTDNEP1-208ENST00000573600 NBPF11Q86T75 865 aa33.84■■■■□ 3.01
CTDNEP1-208ENST00000573600 SYAP1Q96A49 352 aaPredicted RBP33.84■■■■□ 3.01
CTDNEP1-208ENST00000573600 ISY1Q9ULR0 285 aaKnown RBP33.84■■■■□ 3.01
CTDNEP1-208ENST00000573600 MYO3BQ8WXR4 1341 aa33.83■■■■□ 3.01
CTDNEP1-208ENST00000573600 DEXIO95424 95 aa33.83■■■■□ 3.01
CTDNEP1-208ENST00000573600 TRIM29Q14134 588 aa33.83■■■■□ 3.01
CTDNEP1-208ENST00000573600 RCSD1Q6JBY9 416 aa33.83■■■■□ 3.01
CTDNEP1-208ENST00000573600 BRAPQ7Z569 592 aa33.83■■■■□ 3.01
CTDNEP1-208ENST00000573600 SLC44A5Q8NCS7 719 aa33.83■■■■□ 3.01
CTDNEP1-208ENST00000573600 SPATA32Q96LK8 384 aa33.83■■■■□ 3.01
CTDNEP1-208ENST00000573600 R3HDM1Q15032 1099 aaKnown RBP33.82■■■■□ 3
CTDNEP1-208ENST00000573600 LARGE2Q8N3Y3 721 aa33.82■■■■□ 3
CTDNEP1-208ENST00000573600 RNF26Q9BY78 433 aaPredicted RBP33.82■■■■□ 3
CTDNEP1-208ENST00000573600 KAT14Q9H8E8 782 aa33.82■■■■□ 3
CTDNEP1-208ENST00000573600 IL17RBQ9NRM6 502 aa33.82■■■■□ 3
CTDNEP1-208ENST00000573600 OTUD7BQ6GQQ9 843 aa33.82■■■■□ 3
CTDNEP1-208ENST00000573600 CTCFLQ8NI51 663 aaPredicted RBP33.82■■■■□ 3
CTDNEP1-208ENST00000573600 OSBPL5Q9H0X9 879 aaPredicted RBP33.82■■■■□ 3
CTDNEP1-208ENST00000573600 DDX4Q9NQI0 724 aaKnown RBP33.82■■■■□ 3
CTDNEP1-208ENST00000573600 TFIP11Q9UBB9 837 aaKnown RBP33.82■■■■□ 3
CTDNEP1-208ENST00000573600 BRCA1P38398 1863 aaKnown RBP33.81■■■■□ 3
CTDNEP1-208ENST00000573600 DALRD3Q5D0E6 543 aaKnown RBP33.81■■■■□ 3
CTDNEP1-208ENST00000573600 LEO1Q8WVC0 666 aaPredicted RBP33.81■■■■□ 3
CTDNEP1-208ENST00000573600 MAP3K14Q99558 947 aa33.81■■■■□ 3
CTDNEP1-208ENST00000573600 RBM5P52756 815 aaKnown RBP eCLIP33.8■■■■□ 3
CTDNEP1-208ENST00000573600 KRT40Q6A162 431 aa33.8■■■■□ 3
CTDNEP1-208ENST00000573600 NEDD1Q8NHV4 660 aa33.8■■■■□ 3
CTDNEP1-208ENST00000573600 MYH6P13533 1939 aa33.8■■■■□ 3
CTDNEP1-208ENST00000573600 AIFM3Q96NN9 605 aa33.79■■■■□ 3
CTDNEP1-208ENST00000573600 SWAP70Q9UH65 585 aa33.79■■■■□ 3
CTDNEP1-208ENST00000573600 AKAP17AQ02040 695 aaKnown RBP33.79■■■■□ 3
CTDNEP1-208ENST00000573600 ZNF277Q9NRM2 450 aaPredicted RBP33.79■■■■□ 3
CTDNEP1-208ENST00000573600 GOLGA6L3A6NEY3 463 aa33.78■■■■□ 3
CTDNEP1-208ENST00000573600 NPM3O75607 178 aaKnown RBP33.78■■■■□ 3
CTDNEP1-208ENST00000573600 HLA-DOAP06340 250 aa33.78■■■■□ 3
CTDNEP1-208ENST00000573600 KIF23Q02241 960 aaPredicted RBP33.78■■■■□ 3
CTDNEP1-208ENST00000573600 GABPAQ06546 454 aa33.78■■■■□ 3
CTDNEP1-208ENST00000573600 ZSCAN23Q3MJ62 389 aa33.78■■■■□ 3
CTDNEP1-208ENST00000573600 TMEM63CQ9P1W3 806 aa33.78■■■■□ 3
CTDNEP1-208ENST00000573600 MYH8P13535 1937 aa33.77■■■■□ 3
CTDNEP1-208ENST00000573600 KIF5BP33176 963 aa33.77■■■■□ 3
CTDNEP1-208ENST00000573600 ZNF445P59923 1031 aa33.77■■■■□ 3
CTDNEP1-208ENST00000573600 UPF1Q92900 1129 aaKnown RBP eCLIP33.77■■■■□ 3
CTDNEP1-208ENST00000573600 IDI2Q9BXS1 227 aa33.77■■■■□ 3
CTDNEP1-208ENST00000573600 RBM27Q9P2N5 1060 aaKnown RBP33.77■■■■□ 3
CTDNEP1-208ENST00000573600 CD2APQ9Y5K6 639 aa33.77■■■■□ 3
CTDNEP1-208ENST00000573600 FSD2A1L4K1 749 aa33.76■■■■□ 3
CTDNEP1-208ENST00000573600 PRPF3O43395 683 aaKnown RBP33.76■■■■□ 3
CTDNEP1-208ENST00000573600 RSBN1LQ6PCB5 846 aaPredicted RBP33.76■■■■□ 3
CTDNEP1-208ENST00000573600 TMTC3Q6ZXV5 915 aa33.76■■■■□ 3
CTDNEP1-208ENST00000573600 GJB4Q9NTQ9 266 aa33.76■■■■□ 3
CTDNEP1-208ENST00000573600 L1TD1Q5T7N2 865 aaKnown RBP33.76■■■□□ 2.99
CTDNEP1-208ENST00000573600 PNMA1Q8ND90 353 aa33.76■■■□□ 2.99
CTDNEP1-208ENST00000573600 SERPINB13Q9UIV8 391 aa33.76■■■□□ 2.99
CTDNEP1-208ENST00000573600 VIL1P09327 827 aaKnown RBP33.75■■■□□ 2.99
CTDNEP1-208ENST00000573600 FUT2Q10981 343 aa33.75■■■□□ 2.99
CTDNEP1-208ENST00000573600 CMTR1Q8N1G2 835 aaKnown RBP33.75■■■□□ 2.99
CTDNEP1-208ENST00000573600 CCDC82Q8N4S0 544 aa33.75■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms