RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 TNKSO95271 1327 aa16.06■□□□□ 0.16
CCDC40-209ENST00000573474 CCDC69A6NI79 296 aa16.06■□□□□ 0.16
CCDC40-209ENST00000573474 TSPY3P0CV98 308 aa16.06■□□□□ 0.16
CCDC40-209ENST00000573474 TSPY8P0CW00 308 aa16.06■□□□□ 0.16
CCDC40-209ENST00000573474 STK3Q13188 491 aa16.06■□□□□ 0.16
CCDC40-209ENST00000573474 SEC23AQ15436 765 aa16.06■□□□□ 0.16
CCDC40-209ENST00000573474 KIF4BQ2VIQ3 1234 aa16.06■□□□□ 0.16
CCDC40-209ENST00000573474 TBC1D10BQ4KMP7 808 aaPredicted RBP16.06■□□□□ 0.16
CCDC40-209ENST00000573474 GTF3C6Q969F1 213 aa16.06■□□□□ 0.16
CCDC40-209ENST00000573474 TCP11L1Q9NUJ3 509 aa16.06■□□□□ 0.16
CCDC40-209ENST00000573474 CNTNAP1P78357 1384 aa16.05■□□□□ 0.16
CCDC40-209ENST00000573474 ZC3H4Q9UPT8 1303 aaKnown RBP16.05■□□□□ 0.16
CCDC40-209ENST00000573474 DDNO94850 711 aaPredicted RBP16.05■□□□□ 0.16
CCDC40-209ENST00000573474 EGFRP00533 1210 aa16.05■□□□□ 0.16
CCDC40-209ENST00000573474 DDIT3P35638 169 aa16.05■□□□□ 0.16
CCDC40-209ENST00000573474 TNNI2P48788 182 aa16.05■□□□□ 0.16
CCDC40-209ENST00000573474 ST3GAL1Q11201 340 aa16.05■□□□□ 0.16
CCDC40-209ENST00000573474 DPY19L2Q6NUT2 758 aa16.05■□□□□ 0.16
CCDC40-209ENST00000573474 SYNE3Q6ZMZ3 975 aa16.05■□□□□ 0.16
CCDC40-209ENST00000573474 METTL16Q86W50 562 aaKnown RBP16.05■□□□□ 0.16
CCDC40-209ENST00000573474 CRACR2BQ8N4Y2 399 aaPredicted RBP16.05■□□□□ 0.16
CCDC40-209ENST00000573474 ENAHQ8N8S7 591 aaPredicted RBP16.05■□□□□ 0.16
CCDC40-209ENST00000573474 TRIM34Q9BYJ4 488 aa16.05■□□□□ 0.16
CCDC40-209ENST00000573474 SENP2Q9HC62 589 aa16.05■□□□□ 0.16
CCDC40-209ENST00000573474 CIZ1Q9ULV3 898 aaPredicted RBP16.05■□□□□ 0.16
CCDC40-209ENST00000573474 SLC12A7Q9Y666 1083 aa16.05■□□□□ 0.16
CCDC40-209ENST00000573474 GOLGA8BA8MQT2 603 aa16.04■□□□□ 0.16
CCDC40-209ENST00000573474 LMOD1P29536 600 aaPredicted RBP16.04■□□□□ 0.16
CCDC40-209ENST00000573474 SHMT1P34896 483 aa16.04■□□□□ 0.16
CCDC40-209ENST00000573474 SCRN1Q12765 414 aa16.04■□□□□ 0.16
CCDC40-209ENST00000573474 TNFAIP1Q13829 316 aa16.04■□□□□ 0.16
CCDC40-209ENST00000573474 IFIT1BQ5T764 474 aaKnown RBP16.04■□□□□ 0.16
CCDC40-209ENST00000573474 APOA5Q6Q788 366 aa16.04■□□□□ 0.16
CCDC40-209ENST00000573474 DGKHQ86XP1 1220 aa16.04■□□□□ 0.16
CCDC40-209ENST00000573474 NEDD1Q8NHV4 660 aa16.04■□□□□ 0.16
CCDC40-209ENST00000573474 ANKS1AQ92625 1134 aa16.04■□□□□ 0.16
CCDC40-209ENST00000573474 LLPHQ9BRT6 129 aaKnown RBP16.04■□□□□ 0.16
CCDC40-209ENST00000573474 CHMP5Q9NZZ3 219 aa16.04■□□□□ 0.16
CCDC40-209ENST00000573474 HPS5Q9UPZ3 1129 aa16.04■□□□□ 0.16
CCDC40-209ENST00000573474 SMC3Q9UQE7 1217 aa16.04■□□□□ 0.16
CCDC40-209ENST00000573474 ZBTB43O43298 467 aa16.03■□□□□ 0.16
CCDC40-209ENST00000573474 DHX16O60231 1041 aaKnown RBP16.03■□□□□ 0.16
CCDC40-209ENST00000573474 EPS15P42566 896 aa16.03■□□□□ 0.16
CCDC40-209ENST00000573474 RCAN1P53805 252 aa16.03■□□□□ 0.16
CCDC40-209ENST00000573474 CCT2P78371 535 aaKnown RBP16.03■□□□□ 0.16
CCDC40-209ENST00000573474 CCDC17Q96LX7 622 aa16.03■□□□□ 0.16
CCDC40-209ENST00000573474 CSRNP1Q96S65 589 aa16.03■□□□□ 0.16
CCDC40-209ENST00000573474 IL17RBQ9NRM6 502 aa16.03■□□□□ 0.16
CCDC40-209ENST00000573474 NMT2O60551 498 aa16.02■□□□□ 0.16
CCDC40-209ENST00000573474 METAP2P50579 478 aaKnown RBP eCLIP16.02■□□□□ 0.16
CCDC40-209ENST00000573474 CATIPQ7Z7H3 387 aa16.02■□□□□ 0.16
CCDC40-209ENST00000573474 TRPM4Q8TD43 1214 aa16.02■□□□□ 0.16
CCDC40-209ENST00000573474 TMEM39BQ9GZU3 492 aa16.02■□□□□ 0.16
CCDC40-209ENST00000573474 ADARB2Q9NS39 739 aaKnown RBP16.02■□□□□ 0.16
CCDC40-209ENST00000573474 HERC5Q9UII4 1024 aaKnown RBP16.02■□□□□ 0.16
CCDC40-209ENST00000573474 HACL1Q9UJ83 578 aa16.02■□□□□ 0.16
CCDC40-209ENST00000573474 PLIN4Q96Q06 1357 aa16.01■□□□□ 0.15
CCDC40-209ENST00000573474 AKR1B1P15121 316 aa16.01■□□□□ 0.15
CCDC40-209ENST00000573474 RASA3Q14644 834 aa16.01■□□□□ 0.15
CCDC40-209ENST00000573474 CERKLQ49MI3 558 aaPredicted RBP16.01■□□□□ 0.15
CCDC40-209ENST00000573474 RCSD1Q6JBY9 416 aa16.01■□□□□ 0.15
CCDC40-209ENST00000573474 TATDN1Q6P1N9 297 aa16.01■□□□□ 0.15
CCDC40-209ENST00000573474 ZNF654Q8IZM8 581 aa16.01■□□□□ 0.15
CCDC40-209ENST00000573474 L3MBTL3Q96JM7 780 aaPredicted RBP16.01■□□□□ 0.15
CCDC40-209ENST00000573474 DNAJC18Q9H819 358 aa16.01■□□□□ 0.15
CCDC40-209ENST00000573474 NCOA5Q9HCD5 579 aaKnown RBP16.01■□□□□ 0.15
CCDC40-209ENST00000573474 PGAP2Q9UHJ9 254 aa16.01■□□□□ 0.15
CCDC40-209ENST00000573474 GOLGA8AA7E2F4 631 aa16■□□□□ 0.15
CCDC40-209ENST00000573474 TBC1D12O60347 775 aa16■□□□□ 0.15
CCDC40-209ENST00000573474 CALM1P0DP23 149 aa16■□□□□ 0.15
CCDC40-209ENST00000573474 CALM2P0DP24 149 aa16■□□□□ 0.15
CCDC40-209ENST00000573474 CALM3P0DP25 149 aa16■□□□□ 0.15
CCDC40-209ENST00000573474 GJB2P29033 226 aa16■□□□□ 0.15
CCDC40-209ENST00000573474 PPP2R5BQ15173 497 aa16■□□□□ 0.15
CCDC40-209ENST00000573474 PPP4R3BQ5MIZ7 849 aa16■□□□□ 0.15
CCDC40-209ENST00000573474 MICU3Q86XE3 530 aa16■□□□□ 0.15
CCDC40-209ENST00000573474 RAB11FIP4Q86YS3 637 aa16■□□□□ 0.15
CCDC40-209ENST00000573474 APOBEC3FQ8IUX4 373 aaKnown RBP16■□□□□ 0.15
CCDC40-209ENST00000573474 KAT14Q9H8E8 782 aa16■□□□□ 0.15
CCDC40-209ENST00000573474 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16■□□□□ 0.15
CCDC40-209ENST00000573474 NID2Q14112 1375 aa16■□□□□ 0.15
CCDC40-209ENST00000573474 ASTN2O75129 1339 aaPredicted RBP15.99■□□□□ 0.15
CCDC40-209ENST00000573474 IGKV6D-41A0A0C4DH26 115 aa15.99■□□□□ 0.15
CCDC40-209ENST00000573474 CCDC196A0A1B0GTZ2 297 aa15.99■□□□□ 0.15
CCDC40-209ENST00000573474 GLTPD2A6NH11 291 aa15.99■□□□□ 0.15
CCDC40-209ENST00000573474 CPLX1O14810 134 aa15.99■□□□□ 0.15
CCDC40-209ENST00000573474 DDAH1O94760 285 aa15.99■□□□□ 0.15
CCDC40-209ENST00000573474 NOVP48745 357 aa15.99■□□□□ 0.15
CCDC40-209ENST00000573474 HIRAP54198 1017 aaPredicted RBP15.99■□□□□ 0.15
CCDC40-209ENST00000573474 NUCB2P80303 420 aa15.99■□□□□ 0.15
CCDC40-209ENST00000573474 MAP3K10Q02779 954 aa15.99■□□□□ 0.15
CCDC40-209ENST00000573474 ANGEL2Q5VTE6 544 aaKnown RBP15.99■□□□□ 0.15
CCDC40-209ENST00000573474 CPLX2Q6PUV4 134 aaKnown RBP15.99■□□□□ 0.15
CCDC40-209ENST00000573474 NSUN7Q8NE18 718 aaKnown RBP15.99■□□□□ 0.15
CCDC40-209ENST00000573474 SMARCC2Q8TAQ2 1214 aa15.99■□□□□ 0.15
CCDC40-209ENST00000573474 MYL10Q9BUA6 226 aa15.99■□□□□ 0.15
CCDC40-209ENST00000573474 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.99■□□□□ 0.15
CCDC40-209ENST00000573474 DEFB129Q9H1M3 183 aa15.99■□□□□ 0.15
CCDC40-209ENST00000573474 FAM196BA6NMK8 535 aa15.98■□□□□ 0.15
CCDC40-209ENST00000573474 MPHOSPH10O00566 681 aaKnown RBP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms