RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 MMP1P03956 469 aa16.45■□□□□ 0.22
VPS35-210ENST00000568784 SLC5A1P13866 664 aa16.45■□□□□ 0.22
VPS35-210ENST00000568784 KRT23Q9C075 422 aa16.45■□□□□ 0.22
VPS35-210ENST00000568784 ENC1O14682 589 aa16.44■□□□□ 0.22
VPS35-210ENST00000568784 IPO7O95373 1038 aaKnown RBP16.44■□□□□ 0.22
VPS35-210ENST00000568784 PLEKHA4Q9H4M7 779 aa16.44■□□□□ 0.22
VPS35-210ENST00000568784 HPSEQ9Y251 543 aa16.44■□□□□ 0.22
VPS35-210ENST00000568784 GTF2E1P29083 439 aaPredicted RBP16.44■□□□□ 0.22
VPS35-210ENST00000568784 ZNF654Q8IZM8 581 aa16.44■□□□□ 0.22
VPS35-210ENST00000568784 RGS22Q8NE09 1264 aa16.44■□□□□ 0.22
VPS35-210ENST00000568784 TTLL11Q8NHH1 800 aa16.44■□□□□ 0.22
VPS35-210ENST00000568784 LTN1O94822 1766 aa16.44■□□□□ 0.22
VPS35-210ENST00000568784 CYP2D7A0A087X1C5 515 aa16.44■□□□□ 0.22
VPS35-210ENST00000568784 TXLNAP40222 546 aa16.44■□□□□ 0.22
VPS35-210ENST00000568784 BCAMP50895 628 aa16.44■□□□□ 0.22
VPS35-210ENST00000568784 SPATA5Q8NB90 893 aa16.44■□□□□ 0.22
VPS35-210ENST00000568784 SYMPKQ92797 1274 aaKnown RBP16.44■□□□□ 0.22
VPS35-210ENST00000568784 DRC1Q96MC2 740 aa16.44■□□□□ 0.22
VPS35-210ENST00000568784 STRBPQ96SI9 672 aaKnown RBP16.44■□□□□ 0.22
VPS35-210ENST00000568784 NBPF3Q9H094 633 aa16.44■□□□□ 0.22
VPS35-210ENST00000568784 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.44■□□□□ 0.22
VPS35-210ENST00000568784 RSPH14Q9UHP6 348 aa16.44■□□□□ 0.22
VPS35-210ENST00000568784 JAG2Q9Y219 1238 aa16.44■□□□□ 0.22
VPS35-210ENST00000568784 MRFAP1Q9Y605 127 aa16.44■□□□□ 0.22
VPS35-210ENST00000568784 DEXIO95424 95 aa16.43■□□□□ 0.22
VPS35-210ENST00000568784 KANK3Q6NY19 840 aa16.43■□□□□ 0.22
VPS35-210ENST00000568784 RAD9BQ6WBX8 426 aa16.43■□□□□ 0.22
VPS35-210ENST00000568784 LCORLQ8N3X6 602 aa16.43■□□□□ 0.22
VPS35-210ENST00000568784 IGDCC4Q8TDY8 1250 aa16.43■□□□□ 0.22
VPS35-210ENST00000568784 MAP3K14Q99558 947 aa16.43■□□□□ 0.22
VPS35-210ENST00000568784 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.43■□□□□ 0.221e-7■□□□□ 11
VPS35-210ENST00000568784 ZMYND10O75800 440 aa16.43■□□□□ 0.22
VPS35-210ENST00000568784 KRT9P35527 623 aa16.43■□□□□ 0.22
VPS35-210ENST00000568784 NLRP5P59047 1200 aa16.43■□□□□ 0.22
VPS35-210ENST00000568784 KIAA1328Q86T90 577 aa16.43■□□□□ 0.22
VPS35-210ENST00000568784 ZBTB38Q8NAP3 1195 aaPredicted RBP16.43■□□□□ 0.22
VPS35-210ENST00000568784 RABGGTAQ92696 567 aa16.43■□□□□ 0.22
VPS35-210ENST00000568784 PDE8BO95263 885 aa16.43■□□□□ 0.22
VPS35-210ENST00000568784 DNA2P51530 1060 aa16.43■□□□□ 0.22
VPS35-210ENST00000568784 ENOX1Q8TC92 643 aaKnown RBP16.43■□□□□ 0.22
VPS35-210ENST00000568784 ADAM21Q9UKJ8 722 aa16.43■□□□□ 0.22
VPS35-210ENST00000568784 PCDH11XQ9BZA7 1347 aa16.43■□□□□ 0.22
VPS35-210ENST00000568784 PCDH11YQ9BZA8 1340 aa16.43■□□□□ 0.22
VPS35-210ENST00000568784 PATL2C9JE40 543 aaKnown RBP16.42■□□□□ 0.22
VPS35-210ENST00000568784 PCCAP05165 728 aaPredicted RBP16.42■□□□□ 0.22
VPS35-210ENST00000568784 UQCRFS1P1P0C7P4 283 aa16.42■□□□□ 0.22
VPS35-210ENST00000568784 ERCC3P19447 782 aa16.42■□□□□ 0.22
VPS35-210ENST00000568784 PTPREP23469 700 aa16.42■□□□□ 0.22
VPS35-210ENST00000568784 MATR3P43243 847 aaKnown RBP eCLIP16.42■□□□□ 0.22
VPS35-210ENST00000568784 PLCD1P51178 756 aa16.42■□□□□ 0.22
VPS35-210ENST00000568784 EIF5P55010 431 aaKnown RBP16.42■□□□□ 0.22
VPS35-210ENST00000568784 FANCBQ8NB91 859 aa16.42■□□□□ 0.22
VPS35-210ENST00000568784 CNNM2Q9H8M5 875 aa16.42■□□□□ 0.22
VPS35-210ENST00000568784 FMNL1O95466 1100 aaPredicted RBP16.42■□□□□ 0.22
VPS35-210ENST00000568784 TOB1P50616 345 aaPredicted RBP16.42■□□□□ 0.22
VPS35-210ENST00000568784 MAP3K9P80192 1104 aa16.42■□□□□ 0.22
VPS35-210ENST00000568784 UBXN1Q04323 297 aa16.42■□□□□ 0.22
VPS35-210ENST00000568784 IL2RBP14784 551 aa16.42■□□□□ 0.22
VPS35-210ENST00000568784 CTSWP56202 376 aa16.42■□□□□ 0.22
VPS35-210ENST00000568784 RAD51AP2Q09MP3 1159 aa16.42■□□□□ 0.22
VPS35-210ENST00000568784 CPDO75976 1380 aa16.42■□□□□ 0.22
VPS35-210ENST00000568784 TULP1O00294 542 aaPredicted RBP16.42■□□□□ 0.22
VPS35-210ENST00000568784 IFIT1BQ5T764 474 aaKnown RBP16.42■□□□□ 0.22
VPS35-210ENST00000568784 NCAPH2Q6IBW4 605 aa16.42■□□□□ 0.22
VPS35-210ENST00000568784 PIK3AP1Q6ZUJ8 805 aa16.42■□□□□ 0.22
VPS35-210ENST00000568784 CEP112Q8N8E3 955 aa16.42■□□□□ 0.22
VPS35-210ENST00000568784 SEC31BQ9NQW1 1179 aa16.42■□□□□ 0.22
VPS35-210ENST00000568784 IFNAR1P17181 557 aa16.41■□□□□ 0.22
VPS35-210ENST00000568784 SRGAP1Q7Z6B7 1085 aa16.41■□□□□ 0.22
VPS35-210ENST00000568784 FCHSD1Q86WN1 690 aa16.41■□□□□ 0.22
VPS35-210ENST00000568784 ABCB6Q9NP58 842 aa16.41■□□□□ 0.22
VPS35-210ENST00000568784 FBXO2Q9UK22 296 aaPredicted RBP16.41■□□□□ 0.22
VPS35-210ENST00000568784 FAN1Q9Y2M0 1017 aa16.41■□□□□ 0.22
VPS35-210ENST00000568784 SMIM22K7EJ46 135 aa16.41■□□□□ 0.22
VPS35-210ENST00000568784 RASGRF1Q13972 1273 aa16.41■□□□□ 0.22
VPS35-210ENST00000568784 UBE3CQ15386 1083 aa16.41■□□□□ 0.22
VPS35-210ENST00000568784 CATIPQ7Z7H3 387 aa16.41■□□□□ 0.22
VPS35-210ENST00000568784 EPB41L4AQ9HCS5 686 aaPredicted RBP16.41■□□□□ 0.22
VPS35-210ENST00000568784 N4BP1O75113 896 aaKnown RBP16.41■□□□□ 0.22
VPS35-210ENST00000568784 KRT2P35908 639 aa16.41■□□□□ 0.22
VPS35-210ENST00000568784 KCNJ6P48051 423 aa16.41■□□□□ 0.22
VPS35-210ENST00000568784 ADGRG1Q9Y653 693 aa16.41■□□□□ 0.22
VPS35-210ENST00000568784 ZRANB2O95218 330 aaKnown RBP eCLIP16.4■□□□□ 0.22
VPS35-210ENST00000568784 NAPGQ99747 312 aaPredicted RBP16.4■□□□□ 0.22
VPS35-210ENST00000568784 TEX13AQ9BXU3 409 aaPredicted RBP16.4■□□□□ 0.22
VPS35-210ENST00000568784 CDC23Q9UJX2 597 aa16.4■□□□□ 0.22
VPS35-210ENST00000568784 TFR2Q9UP52 801 aa16.4■□□□□ 0.22
VPS35-210ENST00000568784 TNKSO95271 1327 aa16.4■□□□□ 0.22
VPS35-210ENST00000568784 NFAT5O94916 1531 aa16.4■□□□□ 0.22
VPS35-210ENST00000568784 NAP1L1P55209 391 aaKnown RBP16.4■□□□□ 0.22
VPS35-210ENST00000568784 NTRK3Q16288 839 aa16.4■□□□□ 0.22
VPS35-210ENST00000568784 BICDL1Q6ZP65 573 aa16.4■□□□□ 0.22
VPS35-210ENST00000568784 HDXQ7Z353 690 aa16.4■□□□□ 0.22
VPS35-210ENST00000568784 FAM217BQ9NTX9 383 aaPredicted RBP16.4■□□□□ 0.22
VPS35-210ENST00000568784 TRIM66O15016 1216 aa16.4■□□□□ 0.22
VPS35-210ENST00000568784 PPARDQ03181 441 aa16.4■□□□□ 0.22
VPS35-210ENST00000568784 PUM3Q15397 648 aaKnown RBP16.4■□□□□ 0.22
VPS35-210ENST00000568784 SPATA1Q5VX52 437 aa16.4■□□□□ 0.22
VPS35-210ENST00000568784 ESR2Q92731 530 aa16.4■□□□□ 0.22
VPS35-210ENST00000568784 ATG3Q9NT62 314 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms