RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 MRVI1Q9Y6F6 885 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 CASP8AP2Q9UKL3 1982 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 COL6A3P12111 3177 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 BAHCC1Q9P281 2608 aa3.85□□□□□ -1.79
VPS35-209ENST00000568642 LAMC1P11047 1609 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 CICQ96RK0 1608 aaPredicted RBP3.84□□□□□ -1.79
VPS35-209ENST00000568642 NALCNQ8IZF0 1738 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 CDC42BPBQ9Y5S2 1711 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 A0A1W2PRU2 124 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 FOXO3O43524 673 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 PTMSP20962 102 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 RAB27AP51159 221 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 EPHB1P54762 984 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 ERFEQ4G0M1 354 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 TM4SF20Q53R12 229 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 FAM83BQ5T0W9 1011 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 ACBD5Q5T8D3 534 aaPredicted RBP3.84□□□□□ -1.79
VPS35-209ENST00000568642 KRTAP5-3Q6L8H2 238 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 PDXDC2PQ6P474 469 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 RINLQ6ZS11 566 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 PRICKLE2Q7Z3G6 844 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 WDR75Q8IWA0 830 aaKnown RBP3.84□□□□□ -1.79
VPS35-209ENST00000568642 SPICE1Q8N0Z3 855 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 SERBP1Q8NC51 408 aaKnown RBP eCLIP3.84□□□□□ -1.79
VPS35-209ENST00000568642 ADAM32Q8TC27 787 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 FAM122AQ96E09 287 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 SHDQ96IW2 340 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 TRERF1Q96PN7 1200 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 SLC26A8Q96RN1 970 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 CSRNP1Q96S65 589 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 C19orf44Q9H6X5 657 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 ZNF358Q9NW07 568 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 TAGLN3Q9UI15 199 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 NSFL1CQ9UNZ2 370 aaKnown RBP3.84□□□□□ -1.79
VPS35-209ENST00000568642 KIF27Q86VH2 1401 aa3.84□□□□□ -1.79
VPS35-209ENST00000568642 MYOM2P54296 1465 aa3.84□□□□□ -1.8
VPS35-209ENST00000568642 EHBP1L1Q8N3D4 1523 aa3.84□□□□□ -1.8
VPS35-209ENST00000568642 HMGB1P1B2RPK0 211 aaPredicted RBP3.83□□□□□ -1.8
VPS35-209ENST00000568642 TBX3O15119 743 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 AKAP10O43572 662 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 NRDCO43847 1150 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 EYA4O95677 639 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 LDHCP07864 332 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 LIG1P18858 919 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 AMPD1P23109 780 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 SERPINB3P29508 390 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 TXKP42681 527 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 USP5P45974 858 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 MAP2K3P46734 347 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 ST13P50502 369 aaKnown RBP3.83□□□□□ -1.8
VPS35-209ENST00000568642 C1orf53Q5VUE5 145 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 ZNF280DQ6N043 979 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 C16orf46Q6P387 395 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 SH3BP5LQ7L8J4 393 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 RNF180Q86T96 592 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 HOMER1Q86YM7 354 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 NGDNQ8NEJ9 315 aaKnown RBP3.83□□□□□ -1.8
VPS35-209ENST00000568642 ATXN2LQ8WWM7 1075 aaKnown RBP3.83□□□□□ -1.8
VPS35-209ENST00000568642 FMNL2Q96PY5 1086 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 HINFPQ9BQA5 517 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 PAGR1Q9BTK6 254 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 KBTBD4Q9NVX7 518 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 ZNF69Q9UC07 566 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 INTUQ9ULD6 942 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 POLIQ9UNA4 740 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 PCDHB9Q9Y5E1 797 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 CD2APQ9Y5K6 639 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 RPGRIP1LQ68CZ1 1315 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 NUP153P49790 1475 aaKnown RBP3.83□□□□□ -1.8
VPS35-209ENST00000568642 MEGF6O75095 1541 aa3.83□□□□□ -1.8
VPS35-209ENST00000568642 LAMB4A4D0S4 1761 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 TOPAZ1Q8N9V7 1692 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 PTPN23Q9H3S7 1636 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 PRAG1Q86YV5 1406 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 MAGEB6P1A0A0J9YX57 407 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 EIF1AYO14602 144 aaKnown RBP3.82□□□□□ -1.8
VPS35-209ENST00000568642 PAX4O43316 350 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 DIAPH1O60610 1272 aaKnown RBP3.82□□□□□ -1.8
VPS35-209ENST00000568642 STAU1O95793 577 aaKnown RBP3.82□□□□□ -1.8
VPS35-209ENST00000568642 STAT3P40763 770 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 DGKGP49619 791 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 SCNN1DP51172 638 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 CHMP4BP1P59074 171 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 LMOD3Q0VAK6 560 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 RASGRF1Q13972 1273 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 MORC3Q14149 939 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 TAF1CQ15572 869 aaPredicted RBP3.82□□□□□ -1.8
VPS35-209ENST00000568642 OXLD1Q5BKU9 147 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 C1QTNF12Q5T7M4 302 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 ICE2Q659A1 982 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 IFNL3Q8IZI9 196 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 AFAP1L2Q8N4X5 818 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 C1orf131Q8NDD1 294 aaKnown RBP3.82□□□□□ -1.8
VPS35-209ENST00000568642 NLGN2Q8NFZ4 835 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 SECISBP2LQ93073 1101 aaKnown RBP3.82□□□□□ -1.8
VPS35-209ENST00000568642 CDH19Q9H159 772 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 NMRK2Q9NPI5 230 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 PRDM6Q9NQX0 595 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 STIM2Q9P246 746 aa3.82□□□□□ -1.8
VPS35-209ENST00000568642 PRKAG3Q9UGI9 489 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms