RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 DYNLL1P63167 89 aaKnown RBP18.25■□□□□ 0.51
CLN3-236ENST00000568558 MTMR2Q13614 643 aa18.25■□□□□ 0.51
CLN3-236ENST00000568558 CRACR2BQ8N4Y2 399 aaPredicted RBP18.25■□□□□ 0.51
CLN3-236ENST00000568558 PAK6Q9NQU5 681 aaPredicted RBP18.25■□□□□ 0.51
CLN3-236ENST00000568558 GDF11O95390 407 aa18.24■□□□□ 0.51
CLN3-236ENST00000568558 SHROOM1Q2M3G4 852 aaPredicted RBP18.24■□□□□ 0.51
CLN3-236ENST00000568558 CEP85Q6P2H3 762 aa18.24■□□□□ 0.51
CLN3-236ENST00000568558 DEFB118Q96PH6 123 aa18.24■□□□□ 0.51
CLN3-236ENST00000568558 TRIM34Q9BYJ4 488 aa18.24■□□□□ 0.51
CLN3-236ENST00000568558 GINM1Q9NU53 330 aa18.24■□□□□ 0.51
CLN3-236ENST00000568558 MORF4L1Q9UBU8 362 aa18.24■□□□□ 0.51
CLN3-236ENST00000568558 SAP30BPQ9UHR5 308 aaKnown RBP18.24■□□□□ 0.51
CLN3-236ENST00000568558 ZBTB21Q9ULJ3 1066 aa18.24■□□□□ 0.51
CLN3-236ENST00000568558 IDH1O75874 414 aaKnown RBP18.23■□□□□ 0.51
CLN3-236ENST00000568558 CAPN2P17655 700 aa18.23■□□□□ 0.51
CLN3-236ENST00000568558 CYP7A1P22680 504 aa18.23■□□□□ 0.51
CLN3-236ENST00000568558 HOXA7P31268 230 aaPredicted RBP18.23■□□□□ 0.51
CLN3-236ENST00000568558 CHRDL2Q6WN34 429 aa18.23■□□□□ 0.51
CLN3-236ENST00000568558 TMOD4Q9NZQ9 345 aa18.23■□□□□ 0.51
CLN3-236ENST00000568558 GJD2Q9UKL4 321 aa18.23■□□□□ 0.51
CLN3-236ENST00000568558 MYH8P13535 1937 aa18.22■□□□□ 0.51
CLN3-236ENST00000568558 C19orf81C9J6K1 198 aa18.22■□□□□ 0.51
CLN3-236ENST00000568558 HLA-DOAP06340 250 aa18.22■□□□□ 0.51
CLN3-236ENST00000568558 IRX3P78415 501 aaPredicted RBP18.22■□□□□ 0.51
CLN3-236ENST00000568558 USP17L10C9JJH3 530 aa18.21■□□□□ 0.51
CLN3-236ENST00000568558 TFRCP02786 760 aaKnown RBP18.21■□□□□ 0.51
CLN3-236ENST00000568558 HMGCRP04035 888 aa18.21■□□□□ 0.51
CLN3-236ENST00000568558 CERS3Q8IU89 383 aa18.21■□□□□ 0.51
CLN3-236ENST00000568558 ERC1Q8IUD2 1116 aa18.21■□□□□ 0.51
CLN3-236ENST00000568558 MAGEB6Q8N7X4 407 aa18.21■□□□□ 0.51
CLN3-236ENST00000568558 MIGA1Q8NAN2 632 aa18.21■□□□□ 0.51
CLN3-236ENST00000568558 P2RX7Q99572 595 aaKnown RBP18.21■□□□□ 0.51
CLN3-236ENST00000568558 CRISPLD2Q9H0B8 497 aa18.21■□□□□ 0.51
CLN3-236ENST00000568558 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.21■□□□□ 0.51
CLN3-236ENST00000568558 ANTXR1Q9H6X2 564 aa18.21■□□□□ 0.51
CLN3-236ENST00000568558 EXOC6BQ9Y2D4 811 aa18.21■□□□□ 0.51
CLN3-236ENST00000568558 NDUFB9Q9Y6M9 179 aa18.21■□□□□ 0.51
CLN3-236ENST00000568558 SZT2Q5T011 3432 aa18.21■□□□□ 0.51
CLN3-236ENST00000568558 RANBP2P49792 3224 aaKnown RBP18.21■□□□□ 0.51
CLN3-236ENST00000568558 HERVK_113P62684 666 aa18.2■□□□□ 0.5
CLN3-236ENST00000568558 ZBED9Q6R2W3 1325 aa18.2■□□□□ 0.5
CLN3-236ENST00000568558 FRMPD3Q5JV73 1810 aa18.19■□□□□ 0.5
CLN3-236ENST00000568558 PEX10O60683 326 aa18.19■□□□□ 0.5
CLN3-236ENST00000568558 USP5P45974 858 aa18.19■□□□□ 0.5
CLN3-236ENST00000568558 TATDN1Q6P1N9 297 aa18.19■□□□□ 0.5
CLN3-236ENST00000568558 AACSQ86V21 672 aa18.19■□□□□ 0.5
CLN3-236ENST00000568558 PANK1Q8TE04 598 aa18.19■□□□□ 0.5
CLN3-236ENST00000568558 TXNRD2Q9NNW7 524 aa18.19■□□□□ 0.5
CLN3-236ENST00000568558 EMILIN3Q9NT22 766 aa18.19■□□□□ 0.5
CLN3-236ENST00000568558 RBM27Q9P2N5 1060 aaKnown RBP18.19■□□□□ 0.5
CLN3-236ENST00000568558 NR2E3Q9Y5X4 410 aa18.19■□□□□ 0.5
CLN3-236ENST00000568558 MYH7P12883 1935 aa18.19■□□□□ 0.5
CLN3-236ENST00000568558 GH2P01242 217 aa18.18■□□□□ 0.5
CLN3-236ENST00000568558 MAP3K12Q12852 859 aa18.18■□□□□ 0.5
CLN3-236ENST00000568558 TRIM32Q13049 653 aa18.18■□□□□ 0.5
CLN3-236ENST00000568558 TMED8Q6PL24 325 aaPredicted RBP18.18■□□□□ 0.5
CLN3-236ENST00000568558 EHD4Q9H223 541 aa18.18■□□□□ 0.5
CLN3-236ENST00000568558 PRO3102Q9H379 93 aa18.18■□□□□ 0.5
CLN3-236ENST00000568558 RPTORQ8N122 1335 aa18.18■□□□□ 0.5
CLN3-236ENST00000568558 USP17L2Q6R6M4 530 aa18.17■□□□□ 0.5
CLN3-236ENST00000568558 GPRC5AQ8NFJ5 357 aa18.17■□□□□ 0.5
CLN3-236ENST00000568558 TRIB2Q92519 343 aa18.17■□□□□ 0.5
CLN3-236ENST00000568558 PAWRQ96IZ0 340 aaKnown RBP18.17■□□□□ 0.5
CLN3-236ENST00000568558 HMX1Q9NP08 348 aaPredicted RBP18.17■□□□□ 0.5
CLN3-236ENST00000568558 IL1RAPL2Q9NP60 686 aa18.17■□□□□ 0.5
CLN3-236ENST00000568558 RBPJLQ9UBG7 517 aa18.17■□□□□ 0.5
CLN3-236ENST00000568558 SERPINB13Q9UIV8 391 aa18.17■□□□□ 0.5
CLN3-236ENST00000568558 CYP2B6P20813 491 aa18.16■□□□□ 0.5
CLN3-236ENST00000568558 ERVK-9P63128 1117 aa18.16■□□□□ 0.5
CLN3-236ENST00000568558 ERVK-24P63145 666 aa18.16■□□□□ 0.5
CLN3-236ENST00000568558 HSP90AB4PQ58FF6 505 aa18.16■□□□□ 0.5
CLN3-236ENST00000568558 TTC6Q86TZ1 520 aa18.16■□□□□ 0.5
CLN3-236ENST00000568558 ANKLE1Q8NAG6 615 aa18.16■□□□□ 0.5
CLN3-236ENST00000568558 RHPN1Q8TCX5 695 aa18.16■□□□□ 0.5
CLN3-236ENST00000568558 DIS3LQ8TF46 1054 aaKnown RBP18.16■□□□□ 0.5
CLN3-236ENST00000568558 GTF3C2Q8WUA4 911 aaPredicted RBP18.16■□□□□ 0.5
CLN3-236ENST00000568558 SOCS4Q8WXH5 440 aa18.16■□□□□ 0.5
CLN3-236ENST00000568558 C12orf42Q96LP6 360 aa18.16■□□□□ 0.5
CLN3-236ENST00000568558 NUDT12Q9BQG2 462 aa18.16■□□□□ 0.5
CLN3-236ENST00000568558 RIOK1Q9BRS2 568 aaKnown RBP18.16■□□□□ 0.5
CLN3-236ENST00000568558 BAZ2AQ9UIF9 1905 aaKnown RBP18.15■□□□□ 0.5
CLN3-236ENST00000568558 EVI5O60447 810 aa18.15■□□□□ 0.5
CLN3-236ENST00000568558 MAPK4P31152 587 aa18.15■□□□□ 0.5
CLN3-236ENST00000568558 Q3C1V9 767 aa18.15■□□□□ 0.5
CLN3-236ENST00000568558 POTEEQ6S8J3 1075 aa18.15■□□□□ 0.5
CLN3-236ENST00000568558 NECAB2Q7Z6G3 386 aa18.15■□□□□ 0.5
CLN3-236ENST00000568558 XRCC5P13010 732 aaKnown RBP18.14■□□□□ 0.49
CLN3-236ENST00000568558 ZYXQ15942 572 aaKnown RBP18.14■□□□□ 0.49
CLN3-236ENST00000568558 MAP3K21Q5TCX8 1036 aa18.14■□□□□ 0.49
CLN3-236ENST00000568558 FEZ1Q99689 392 aa18.14■□□□□ 0.49
CLN3-236ENST00000568558 PAGR1Q9BTK6 254 aa18.14■□□□□ 0.49
CLN3-236ENST00000568558 PORCNQ9H237 461 aa18.14■□□□□ 0.49
CLN3-236ENST00000568558 MS4A1P11836 297 aa18.13■□□□□ 0.49
CLN3-236ENST00000568558 PRKAR2AP13861 404 aaKnown RBP18.13■□□□□ 0.49
CLN3-236ENST00000568558 SHMT1P34896 483 aa18.13■□□□□ 0.49
CLN3-236ENST00000568558 PLCD1P51178 756 aa18.13■□□□□ 0.49
CLN3-236ENST00000568558 PDE3AQ14432 1141 aa18.13■□□□□ 0.49
CLN3-236ENST00000568558 RAB3GAP1Q15042 981 aa18.13■□□□□ 0.49
CLN3-236ENST00000568558 TTF1Q15361 905 aaPredicted RBP18.13■□□□□ 0.49
CLN3-236ENST00000568558 ABCB5Q2M3G0 1257 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms