RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 MCM9Q9NXL9 1143 aa18.13■□□□□ 0.49
VPS39-210ENST00000568357 ZBTB47Q9UFB7 747 aaPredicted RBP18.13■□□□□ 0.49
VPS39-210ENST00000568357 KIAA0100Q14667 2235 aaKnown RBP18.13■□□□□ 0.49
VPS39-210ENST00000568357 USP17L5A8MUK1 530 aa18.12■□□□□ 0.49
VPS39-210ENST00000568357 RNF113AO15541 343 aaKnown RBP18.12■□□□□ 0.49
VPS39-210ENST00000568357 TLR2O60603 784 aa18.12■□□□□ 0.49
VPS39-210ENST00000568357 GDF11O95390 407 aa18.12■□□□□ 0.49
VPS39-210ENST00000568357 CYP2D6P10635 497 aa18.12■□□□□ 0.49
VPS39-210ENST00000568357 FASTKD5Q7L8L6 764 aaKnown RBP18.12■□□□□ 0.49
VPS39-210ENST00000568357 ZNF280CQ8ND82 737 aa18.12■□□□□ 0.49
VPS39-210ENST00000568357 STAP2Q9UGK3 403 aa18.12■□□□□ 0.49
VPS39-210ENST00000568357 SIPA1L1O43166 1804 aa18.12■□□□□ 0.49
VPS39-210ENST00000568357 ASNSP08243 561 aa18.11■□□□□ 0.49
VPS39-210ENST00000568357 PDE1AP54750 535 aa18.11■□□□□ 0.49
VPS39-210ENST00000568357 GADL1Q6ZQY3 521 aa18.11■□□□□ 0.49
VPS39-210ENST00000568357 CD99L2Q8TCZ2 262 aa18.11■□□□□ 0.49
VPS39-210ENST00000568357 OSBP2Q969R2 916 aa18.11■□□□□ 0.49
VPS39-210ENST00000568357 STRBPQ96SI9 672 aaKnown RBP18.11■□□□□ 0.49
VPS39-210ENST00000568357 LNPKQ9C0E8 428 aa18.11■□□□□ 0.49
VPS39-210ENST00000568357 ATP8A2Q9NTI2 1148 aa18.11■□□□□ 0.49
VPS39-210ENST00000568357 CDK5RAP2Q96SN8 1893 aa18.11■□□□□ 0.49
VPS39-210ENST00000568357 SMIM22K7EJ46 135 aa18.1■□□□□ 0.49
VPS39-210ENST00000568357 CYP2C8P10632 490 aa18.1■□□□□ 0.49
VPS39-210ENST00000568357 SHMT1P34896 483 aa18.1■□□□□ 0.49
VPS39-210ENST00000568357 GABPAQ06546 454 aa18.1■□□□□ 0.49
VPS39-210ENST00000568357 WDR18Q9BV38 432 aa18.1■□□□□ 0.49
VPS39-210ENST00000568357 ZBTB21Q9ULJ3 1066 aa18.1■□□□□ 0.49
VPS39-210ENST00000568357 SLC4A4Q9Y6R1 1079 aa18.1■□□□□ 0.49
VPS39-210ENST00000568357 FOCADQ5VW36 1801 aa18.09■□□□□ 0.49
VPS39-210ENST00000568357 CYP2D7A0A087X1C5 515 aa18.09■□□□□ 0.49
VPS39-210ENST00000568357 GH2P01242 217 aa18.09■□□□□ 0.49
VPS39-210ENST00000568357 ZFYP08048 801 aaPredicted RBP18.09■□□□□ 0.49
VPS39-210ENST00000568357 TREML2Q5T2D2 321 aa18.09■□□□□ 0.49
VPS39-210ENST00000568357 C17orf99Q6UX52 265 aa18.09■□□□□ 0.49
VPS39-210ENST00000568357 APPBP2Q92624 585 aa18.09■□□□□ 0.49
VPS39-210ENST00000568357 ERO1AQ96HE7 468 aa18.09■□□□□ 0.49
VPS39-210ENST00000568357 TBC1D2Q9BYX2 928 aa18.09■□□□□ 0.49
VPS39-210ENST00000568357 GINM1Q9NU53 330 aa18.09■□□□□ 0.49
VPS39-210ENST00000568357 CPA4Q9UI42 421 aa18.09■□□□□ 0.49
VPS39-210ENST00000568357 PTPN22Q9Y2R2 807 aa18.09■□□□□ 0.49
VPS39-210ENST00000568357 ADGRA2Q96PE1 1338 aa18.08■□□□□ 0.49
VPS39-210ENST00000568357 USP17L12C9JPN9 530 aa18.08■□□□□ 0.48
VPS39-210ENST00000568357 USP17L21D6R901 530 aa18.08■□□□□ 0.48
VPS39-210ENST00000568357 HMGCS2P54868 508 aa18.08■□□□□ 0.48
VPS39-210ENST00000568357 NUCB1Q02818 461 aa18.08■□□□□ 0.48
VPS39-210ENST00000568357 CERKLQ49MI3 558 aaPredicted RBP18.08■□□□□ 0.48
VPS39-210ENST00000568357 CHD1LQ86WJ1 897 aa18.08■□□□□ 0.48
VPS39-210ENST00000568357 ARMC5Q96C12 935 aa18.08■□□□□ 0.48
VPS39-210ENST00000568357 DYNLL2Q96FJ2 89 aa18.08■□□□□ 0.48
VPS39-210ENST00000568357 AS3MTQ9HBK9 375 aa18.08■□□□□ 0.48
VPS39-210ENST00000568357 DOCK1Q14185 1865 aa18.07■□□□□ 0.48
VPS39-210ENST00000568357 TRIOBPQ9H2D6 2365 aa18.07■□□□□ 0.48
VPS39-210ENST00000568357 M0R2C6 588 aa18.07■□□□□ 0.48
VPS39-210ENST00000568357 BACE1P56817 501 aa18.07■□□□□ 0.48
VPS39-210ENST00000568357 MTMR2Q13614 643 aa18.07■□□□□ 0.48
VPS39-210ENST00000568357 SH3D19Q5HYK7 790 aa18.07■□□□□ 0.48
VPS39-210ENST00000568357 C12orf60Q5U649 245 aa18.07■□□□□ 0.48
VPS39-210ENST00000568357 CTR9Q6PD62 1173 aa18.07■□□□□ 0.48
VPS39-210ENST00000568357 SLC44A5Q8NCS7 719 aa18.07■□□□□ 0.48
VPS39-210ENST00000568357 SEC62Q99442 399 aaKnown RBP18.07■□□□□ 0.48
VPS39-210ENST00000568357 PARK7Q99497 189 aaKnown RBP18.07■□□□□ 0.48
VPS39-210ENST00000568357 FSD1Q9BTV5 496 aa18.07■□□□□ 0.48
VPS39-210ENST00000568357 ARHGAP39Q9C0H5 1083 aa18.07■□□□□ 0.48
VPS39-210ENST00000568357 AGTPBP1Q9UPW5 1226 aa18.07■□□□□ 0.48
VPS39-210ENST00000568357 SLC45A1Q9Y2W3 748 aa18.07■□□□□ 0.48
VPS39-210ENST00000568357 GSG1L2A8MUP6 293 aa18.06■□□□□ 0.48
VPS39-210ENST00000568357 DLL1O00548 723 aa18.06■□□□□ 0.48
VPS39-210ENST00000568357 ABCB5Q2M3G0 1257 aa18.06■□□□□ 0.48
VPS39-210ENST00000568357 PROCA1Q8NCQ7 364 aaPredicted RBP18.06■□□□□ 0.48
VPS39-210ENST00000568357 EFCC1Q9HA90 598 aa18.06■□□□□ 0.48
VPS39-210ENST00000568357 PHIPQ8WWQ0 1821 aa18.05■□□□□ 0.48
VPS39-210ENST00000568357 GPAA1O43292 621 aa18.05■□□□□ 0.48
VPS39-210ENST00000568357 GUCY1A2P33402 732 aa18.05■□□□□ 0.48
VPS39-210ENST00000568357 LACTBP83111 547 aaPredicted RBP18.05■□□□□ 0.48
VPS39-210ENST00000568357 RAB3GAP1Q15042 981 aa18.05■□□□□ 0.48
VPS39-210ENST00000568357 LRRFIP1Q32MZ4 808 aaKnown RBP18.05■□□□□ 0.48
VPS39-210ENST00000568357 ZMYM1Q5SVZ6 1142 aa18.05■□□□□ 0.48
VPS39-210ENST00000568357 EVI5LQ96CN4 794 aa18.05■□□□□ 0.48
VPS39-210ENST00000568357 MYH1P12882 1939 aa18.04■□□□□ 0.48
VPS39-210ENST00000568357 C19orf81C9J6K1 198 aa18.04■□□□□ 0.48
VPS39-210ENST00000568357 USP17L10C9JJH3 530 aa18.04■□□□□ 0.48
VPS39-210ENST00000568357 H0YGN5 161 aa18.04■□□□□ 0.48
VPS39-210ENST00000568357 ECM2O94769 699 aaPredicted RBP18.04■□□□□ 0.48
VPS39-210ENST00000568357 BCRP11274 1271 aa18.04■□□□□ 0.48
VPS39-210ENST00000568357 CTGFP29279 349 aa18.04■□□□□ 0.48
VPS39-210ENST00000568357 PLEKHM2Q8IWE5 1019 aa18.04■□□□□ 0.48
VPS39-210ENST00000568357 DDRGK1Q96HY6 314 aa18.04■□□□□ 0.48
VPS39-210ENST00000568357 CABP5Q9NP86 173 aa18.04■□□□□ 0.48
VPS39-210ENST00000568357 EMILIN3Q9NT22 766 aa18.04■□□□□ 0.48
VPS39-210ENST00000568357 DDX60LQ5H9U9 1706 aaKnown RBP18.03■□□□□ 0.48
VPS39-210ENST00000568357 CDK8P49336 464 aa18.03■□□□□ 0.48
VPS39-210ENST00000568357 SEPT2Q15019 361 aa18.03■□□□□ 0.48
VPS39-210ENST00000568357 GIMAP6Q6P9H5 292 aa18.03■□□□□ 0.48
VPS39-210ENST00000568357 ACER1Q8TDN7 264 aa18.03■□□□□ 0.48
VPS39-210ENST00000568357 TMOD4Q9NZQ9 345 aa18.03■□□□□ 0.48
VPS39-210ENST00000568357 SWAP70Q9UH65 585 aa18.03■□□□□ 0.48
VPS39-210ENST00000568357 ZSWIM8A7E2V4 1837 aa18.02■□□□□ 0.48
VPS39-210ENST00000568357 PATL2C9JE40 543 aaKnown RBP18.02■□□□□ 0.48
VPS39-210ENST00000568357 KIF22Q14807 665 aa18.02■□□□□ 0.48
VPS39-210ENST00000568357 SBK1Q52WX2 424 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms