RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 TTF1Q15361 905 aaPredicted RBP11.51□□□□□ -0.57
SF3B3-211ENST00000568291 SCYL3Q8IZE3 742 aa11.51□□□□□ -0.57
SF3B3-211ENST00000568291 RAET1EQ8TD07 263 aa11.51□□□□□ -0.57
SF3B3-211ENST00000568291 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.51□□□□□ -0.57
SF3B3-211ENST00000568291 SDR42E1Q8WUS8 393 aa11.51□□□□□ -0.57
SF3B3-211ENST00000568291 SHISA4Q96DD7 197 aa11.51□□□□□ -0.57
SF3B3-211ENST00000568291 MYPNQ86TC9 1320 aa11.51□□□□□ -0.57
SF3B3-211ENST00000568291 TRIM75PA6NK02 468 aa11.5□□□□□ -0.57
SF3B3-211ENST00000568291 MBD4O95243 580 aa11.5□□□□□ -0.57
SF3B3-211ENST00000568291 GDF11O95390 407 aa11.5□□□□□ -0.57
SF3B3-211ENST00000568291 CYP2D6P10635 497 aa11.5□□□□□ -0.57
SF3B3-211ENST00000568291 PLCG2P16885 1265 aa11.5□□□□□ -0.57
SF3B3-211ENST00000568291 HOXD10P28358 340 aa11.5□□□□□ -0.57
SF3B3-211ENST00000568291 GRK4P32298 578 aa11.5□□□□□ -0.57
SF3B3-211ENST00000568291 MAP3K10Q02779 954 aa11.5□□□□□ -0.57
SF3B3-211ENST00000568291 MTFR1Q15390 333 aa11.5□□□□□ -0.57
SF3B3-211ENST00000568291 DNAJC18Q9H819 358 aa11.5□□□□□ -0.57
SF3B3-211ENST00000568291 PICK1Q9NRD5 415 aa11.5□□□□□ -0.57
SF3B3-211ENST00000568291 SIPA1L1O43166 1804 aa11.5□□□□□ -0.57
SF3B3-211ENST00000568291 FOCADQ5VW36 1801 aa11.5□□□□□ -0.57
SF3B3-211ENST00000568291 ALPK3Q96L96 1907 aa11.5□□□□□ -0.57
SF3B3-211ENST00000568291 MYO5AQ9Y4I1 1855 aaKnown RBP11.49□□□□□ -0.57
SF3B3-211ENST00000568291 CYP2D7A0A087X1C5 515 aa11.49□□□□□ -0.57
SF3B3-211ENST00000568291 CXCL11O14625 94 aa11.49□□□□□ -0.57
SF3B3-211ENST00000568291 CTNND1O60716 968 aaKnown RBP11.49□□□□□ -0.57
SF3B3-211ENST00000568291 CYP2C8P10632 490 aa11.49□□□□□ -0.57
SF3B3-211ENST00000568291 BCRP11274 1271 aa11.49□□□□□ -0.57
SF3B3-211ENST00000568291 ADD2P35612 726 aa11.49□□□□□ -0.57
SF3B3-211ENST00000568291 FXR1P51114 621 aaKnown RBP eCLIP11.49□□□□□ -0.576e-7■□□□□ 11.1
SF3B3-211ENST00000568291 PLCD1P51178 756 aa11.49□□□□□ -0.57
SF3B3-211ENST00000568291 FCGRTP55899 365 aa11.49□□□□□ -0.57
SF3B3-211ENST00000568291 PRKCZQ05513 592 aa11.49□□□□□ -0.57
SF3B3-211ENST00000568291 GPAT2Q6NUI2 795 aa11.49□□□□□ -0.57
SF3B3-211ENST00000568291 GADL1Q6ZQY3 521 aa11.49□□□□□ -0.57
SF3B3-211ENST00000568291 CRACR2BQ8N4Y2 399 aaPredicted RBP11.49□□□□□ -0.57
SF3B3-211ENST00000568291 LNPKQ9C0E8 428 aa11.49□□□□□ -0.57
SF3B3-211ENST00000568291 PUS7LQ9H0K6 701 aaKnown RBP11.49□□□□□ -0.57
SF3B3-211ENST00000568291 PI4KBQ9UBF8 816 aa11.49□□□□□ -0.57
SF3B3-211ENST00000568291 A0A0G2JLL6 359 aaPredicted RBP11.48□□□□□ -0.57
SF3B3-211ENST00000568291 H0YGN5 161 aa11.48□□□□□ -0.57
SF3B3-211ENST00000568291 HDAC1Q13547 482 aaPredicted RBP11.48□□□□□ -0.57
SF3B3-211ENST00000568291 PRRT2Q7Z6L0 340 aaPredicted RBP11.48□□□□□ -0.57
SF3B3-211ENST00000568291 PI4K2BQ8TCG2 481 aa11.48□□□□□ -0.57
SF3B3-211ENST00000568291 DHX36Q9H2U1 1008 aaKnown RBP11.48□□□□□ -0.57
SF3B3-211ENST00000568291 BIN2Q9UBW5 565 aaPredicted RBP11.48□□□□□ -0.57
SF3B3-211ENST00000568291 COLQQ9Y215 455 aaPredicted RBP11.48□□□□□ -0.57
SF3B3-211ENST00000568291 AFG3L2Q9Y4W6 797 aa11.48□□□□□ -0.57
SF3B3-211ENST00000568291 COL2A1P02458 1487 aaPredicted RBP11.47□□□□□ -0.57
SF3B3-211ENST00000568291 TBC1D12O60347 775 aa11.47□□□□□ -0.57
SF3B3-211ENST00000568291 POLR3DP05423 398 aaPredicted RBP11.47□□□□□ -0.57
SF3B3-211ENST00000568291 CCL5P13501 91 aa11.47□□□□□ -0.57
SF3B3-211ENST00000568291 MX1P20591 662 aa11.47□□□□□ -0.57
SF3B3-211ENST00000568291 CAP2P40123 477 aa11.47□□□□□ -0.57
SF3B3-211ENST00000568291 UBXN2AP68543 259 aa11.47□□□□□ -0.57
SF3B3-211ENST00000568291 SPP2Q13103 211 aa11.47□□□□□ -0.57
SF3B3-211ENST00000568291 FASTKD5Q7L8L6 764 aaKnown RBP11.47□□□□□ -0.57
SF3B3-211ENST00000568291 FOXP4Q8IVH2 680 aaPredicted RBP11.47□□□□□ -0.57
SF3B3-211ENST00000568291 STK11IPQ8N1F8 1099 aa11.47□□□□□ -0.57
SF3B3-211ENST00000568291 SLAIN1Q8ND83 568 aa11.47□□□□□ -0.57
SF3B3-211ENST00000568291 NKX2-3Q8TAU0 364 aa11.47□□□□□ -0.57
SF3B3-211ENST00000568291 DYNLL2Q96FJ2 89 aa11.47□□□□□ -0.57
SF3B3-211ENST00000568291 GPATCH3Q96I76 525 aa11.47□□□□□ -0.57
SF3B3-211ENST00000568291 SEC62Q99442 399 aaKnown RBP11.47□□□□□ -0.57
SF3B3-211ENST00000568291 TRIM34Q9BYJ4 488 aa11.47□□□□□ -0.57
SF3B3-211ENST00000568291 CRNKL1Q9BZJ0 848 aaKnown RBP11.47□□□□□ -0.57
SF3B3-211ENST00000568291 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.47□□□□□ -0.572e-7■■■□□ 14.9
SF3B3-211ENST00000568291 RWDD1Q9H446 243 aaPredicted RBP11.47□□□□□ -0.57
SF3B3-211ENST00000568291 MCM9Q9NXL9 1143 aa11.47□□□□□ -0.57
SF3B3-211ENST00000568291 ZBTB47Q9UFB7 747 aaPredicted RBP11.47□□□□□ -0.57
SF3B3-211ENST00000568291 HLA-DOAP06340 250 aa11.46□□□□□ -0.57
SF3B3-211ENST00000568291 GJB1P08034 283 aa11.46□□□□□ -0.57
SF3B3-211ENST00000568291 GJA8P48165 433 aa11.46□□□□□ -0.57
SF3B3-211ENST00000568291 KBTBD3Q8NAB2 608 aa11.46□□□□□ -0.57
SF3B3-211ENST00000568291 SLC44A5Q8NCS7 719 aa11.46□□□□□ -0.57
SF3B3-211ENST00000568291 OSBP2Q969R2 916 aa11.46□□□□□ -0.57
SF3B3-211ENST00000568291 RNF208Q9H0X6 261 aa11.46□□□□□ -0.57
SF3B3-211ENST00000568291 DCP1AQ9NPI6 582 aaPredicted RBP11.46□□□□□ -0.57
SF3B3-211ENST00000568291 GABRQQ9UN88 632 aa11.46□□□□□ -0.57
SF3B3-211ENST00000568291 SLC45A1Q9Y2W3 748 aa11.46□□□□□ -0.57
SF3B3-211ENST00000568291 SLC4A4Q9Y6R1 1079 aa11.46□□□□□ -0.57
SF3B3-211ENST00000568291 SALL3Q9BXA9 1300 aa11.45□□□□□ -0.58
SF3B3-211ENST00000568291 PLXNB2O15031 1838 aa11.45□□□□□ -0.58
SF3B3-211ENST00000568291 M0R2C6 588 aa11.45□□□□□ -0.58
SF3B3-211ENST00000568291 RNF113AO15541 343 aaKnown RBP11.45□□□□□ -0.58
SF3B3-211ENST00000568291 ADCY3O60266 1144 aa11.45□□□□□ -0.58
SF3B3-211ENST00000568291 FARP2O94887 1054 aaPredicted RBP11.45□□□□□ -0.58
SF3B3-211ENST00000568291 GH2P01242 217 aa11.45□□□□□ -0.58
SF3B3-211ENST00000568291 UBE3CQ15386 1083 aa11.45□□□□□ -0.58
SF3B3-211ENST00000568291 TREML2Q5T2D2 321 aa11.45□□□□□ -0.58
SF3B3-211ENST00000568291 CHRDL2Q6WN34 429 aa11.45□□□□□ -0.58
SF3B3-211ENST00000568291 SMCR8Q8TEV9 937 aaPredicted RBP11.45□□□□□ -0.58
SF3B3-211ENST00000568291 HTATIP2Q9BUP3 242 aa11.45□□□□□ -0.58
SF3B3-211ENST00000568291 UNC93B1Q9H1C4 597 aa11.45□□□□□ -0.58
SF3B3-211ENST00000568291 HERC5Q9UII4 1024 aaKnown RBP11.45□□□□□ -0.58
SF3B3-211ENST00000568291 AGTPBP1Q9UPW5 1226 aa11.45□□□□□ -0.58
SF3B3-211ENST00000568291 MYH1P12882 1939 aa11.45□□□□□ -0.58
SF3B3-211ENST00000568291 TTC41PQ6P2S7 1318 aa11.44□□□□□ -0.58
SF3B3-211ENST00000568291 USP17L12C9JPN9 530 aa11.44□□□□□ -0.58
SF3B3-211ENST00000568291 USP17L21D6R901 530 aa11.44□□□□□ -0.58
SF3B3-211ENST00000568291 TNPO2O14787 897 aaKnown RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms