RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 PLCD1P51178 756 aa22.53■■□□□ 1.2
CLN3-227ENST00000567495 HMGCS2P54868 508 aa22.53■■□□□ 1.2
CLN3-227ENST00000567495 PRMT2P55345 433 aa22.53■■□□□ 1.2
CLN3-227ENST00000567495 CERKLQ49MI3 558 aaPredicted RBP22.53■■□□□ 1.2
CLN3-227ENST00000567495 ANKRD45Q5TZF3 282 aa22.53■■□□□ 1.2
CLN3-227ENST00000567495 SMCR8Q8TEV9 937 aaPredicted RBP22.53■■□□□ 1.2
CLN3-227ENST00000567495 SDR42E1Q8WUS8 393 aa22.53■■□□□ 1.2
CLN3-227ENST00000567495 RWDD1Q9H446 243 aaPredicted RBP22.53■■□□□ 1.2
CLN3-227ENST00000567495 TMOD4Q9NZQ9 345 aa22.53■■□□□ 1.2
CLN3-227ENST00000567495 USP17L10C9JJH3 530 aa22.52■■□□□ 1.2
CLN3-227ENST00000567495 GDF11O95390 407 aa22.52■■□□□ 1.2
CLN3-227ENST00000567495 BCRP11274 1271 aa22.52■■□□□ 1.2
CLN3-227ENST00000567495 MX1P20591 662 aa22.52■■□□□ 1.2
CLN3-227ENST00000567495 HOXD10P28358 340 aa22.52■■□□□ 1.2
CLN3-227ENST00000567495 GABPAQ06546 454 aa22.52■■□□□ 1.2
CLN3-227ENST00000567495 CABP5Q9NP86 173 aa22.52■■□□□ 1.2
CLN3-227ENST00000567495 RNF113AO15541 343 aaKnown RBP22.51■■□□□ 1.19
CLN3-227ENST00000567495 GH2P01242 217 aa22.51■■□□□ 1.19
CLN3-227ENST00000567495 OSBPP22059 807 aa22.51■■□□□ 1.19
CLN3-227ENST00000567495 JAG1P78504 1218 aa22.51■■□□□ 1.19
CLN3-227ENST00000567495 MTMR2Q13614 643 aa22.51■■□□□ 1.19
CLN3-227ENST00000567495 ABCB5Q2M3G0 1257 aa22.51■■□□□ 1.19
CLN3-227ENST00000567495 TSHZ3Q63HK5 1081 aa22.51■■□□□ 1.19
CLN3-227ENST00000567495 SWAP70Q9UH65 585 aa22.51■■□□□ 1.19
CLN3-227ENST00000567495 FOCADQ5VW36 1801 aa22.5■■□□□ 1.19
CLN3-227ENST00000567495 SHMT1P34896 483 aa22.5■■□□□ 1.19
CLN3-227ENST00000567495 SLFNL1Q499Z3 407 aa22.5■■□□□ 1.19
CLN3-227ENST00000567495 TREML2Q5T2D2 321 aa22.5■■□□□ 1.19
CLN3-227ENST00000567495 PI4K2BQ8TCG2 481 aa22.5■■□□□ 1.19
CLN3-227ENST00000567495 APPBP2Q92624 585 aa22.5■■□□□ 1.19
CLN3-227ENST00000567495 PUS7LQ9H0K6 701 aaKnown RBP22.5■■□□□ 1.19
CLN3-227ENST00000567495 PRKAB2O43741 272 aa22.49■■□□□ 1.19
CLN3-227ENST00000567495 PSMC4P43686 418 aa22.49■■□□□ 1.19
CLN3-227ENST00000567495 GCLCP48506 637 aaPredicted RBP22.49■■□□□ 1.19
CLN3-227ENST00000567495 CAP1Q01518 475 aa22.49■■□□□ 1.19
CLN3-227ENST00000567495 SLC4A4Q9Y6R1 1079 aa22.49■■□□□ 1.19
CLN3-227ENST00000567495 FMNL1O95466 1100 aaPredicted RBP22.48■■□□□ 1.19
CLN3-227ENST00000567495 HOXA7P31268 230 aaPredicted RBP22.48■■□□□ 1.19
CLN3-227ENST00000567495 FCGRTP55899 365 aa22.48■■□□□ 1.19
CLN3-227ENST00000567495 GIMAP6Q6P9H5 292 aa22.48■■□□□ 1.19
CLN3-227ENST00000567495 USP17L2Q6R6M4 530 aa22.48■■□□□ 1.19
CLN3-227ENST00000567495 NBPF11Q86T75 865 aa22.48■■□□□ 1.19
CLN3-227ENST00000567495 OTUD7AQ8TE49 926 aaPredicted RBP22.48■■□□□ 1.19
CLN3-227ENST00000567495 ARMC5Q96C12 935 aa22.48■■□□□ 1.19
CLN3-227ENST00000567495 STRBPQ96SI9 672 aaKnown RBP22.48■■□□□ 1.19
CLN3-227ENST00000567495 STAP2Q9UGK3 403 aa22.48■■□□□ 1.19
CLN3-227ENST00000567495 CHGBP05060 677 aa22.47■■□□□ 1.19
CLN3-227ENST00000567495 GNAT2P19087 354 aa22.47■■□□□ 1.19
CLN3-227ENST00000567495 USP14P54578 494 aa22.47■■□□□ 1.19
CLN3-227ENST00000567495 RAB3GAP1Q15042 981 aa22.47■■□□□ 1.19
CLN3-227ENST00000567495 C12orf60Q5U649 245 aa22.47■■□□□ 1.19
CLN3-227ENST00000567495 TRIM47Q96LD4 638 aa22.47■■□□□ 1.19
CLN3-227ENST00000567495 ARHGAP39Q9C0H5 1083 aa22.47■■□□□ 1.19
CLN3-227ENST00000567495 SUPT16HQ9Y5B9 1047 aaKnown RBP22.47■■□□□ 1.19
CLN3-227ENST00000567495 SIPA1L1O43166 1804 aa22.47■■□□□ 1.19
CLN3-227ENST00000567495 CDK5RAP2Q96SN8 1893 aa22.47■■□□□ 1.19
CLN3-227ENST00000567495 USP17L12C9JPN9 530 aa22.46■■□□□ 1.19
CLN3-227ENST00000567495 USP17L21D6R901 530 aa22.46■■□□□ 1.19
CLN3-227ENST00000567495 IRX3P78415 501 aaPredicted RBP22.46■■□□□ 1.19
CLN3-227ENST00000567495 MLLT1Q03111 559 aaPredicted RBP22.46■■□□□ 1.19
CLN3-227ENST00000567495 FAM110CQ1W6H9 321 aa22.46■■□□□ 1.19
CLN3-227ENST00000567495 SHROOM1Q2M3G4 852 aaPredicted RBP22.46■■□□□ 1.19
CLN3-227ENST00000567495 SMC5Q8IY18 1101 aa22.46■■□□□ 1.19
CLN3-227ENST00000567495 EXOC6Q8TAG9 804 aa22.46■■□□□ 1.19
CLN3-227ENST00000567495 OSBP2Q969R2 916 aa22.46■■□□□ 1.19
CLN3-227ENST00000567495 CCDC17Q96LX7 622 aa22.46■■□□□ 1.19
CLN3-227ENST00000567495 FEZ1Q99689 392 aa22.46■■□□□ 1.19
CLN3-227ENST00000567495 KIAA1683Q9H0B3 1180 aa22.46■■□□□ 1.19
CLN3-227ENST00000567495 ASCC2Q9H1I8 757 aaPredicted RBP22.46■■□□□ 1.19
CLN3-227ENST00000567495 SRRDQ9UH36 339 aa22.46■■□□□ 1.19
CLN3-227ENST00000567495 SALL3Q9BXA9 1300 aa22.46■■□□□ 1.19
CLN3-227ENST00000567495 SOX10P56693 466 aa22.45■■□□□ 1.18
CLN3-227ENST00000567495 SLC9C1Q4G0N8 1177 aa22.45■■□□□ 1.18
CLN3-227ENST00000567495 TICAM2Q86XR7 235 aa22.45■■□□□ 1.18
CLN3-227ENST00000567495 C12orf42Q96LP6 360 aa22.45■■□□□ 1.18
CLN3-227ENST00000567495 FSD1Q9BTV5 496 aa22.45■■□□□ 1.18
CLN3-227ENST00000567495 ARPP21Q9UBL0 812 aaPredicted RBP22.45■■□□□ 1.18
CLN3-227ENST00000567495 PTCH2Q9Y6C5 1203 aa22.45■■□□□ 1.18
CLN3-227ENST00000567495 CYP2D6P10635 497 aa22.44■■□□□ 1.18
CLN3-227ENST00000567495 PDE1AP54750 535 aa22.44■■□□□ 1.18
CLN3-227ENST00000567495 TMEM179Q6ZVK1 233 aa22.44■■□□□ 1.18
CLN3-227ENST00000567495 GTF3C2Q8WUA4 911 aaPredicted RBP22.44■■□□□ 1.18
CLN3-227ENST00000567495 PHIPQ8WWQ0 1821 aa22.44■■□□□ 1.18
CLN3-227ENST00000567495 MYH1P12882 1939 aa22.43■■□□□ 1.18
CLN3-227ENST00000567495 GPAA1O43292 621 aa22.43■■□□□ 1.18
CLN3-227ENST00000567495 SBK1Q52WX2 424 aa22.43■■□□□ 1.18
CLN3-227ENST00000567495 CTR9Q6PD62 1173 aa22.43■■□□□ 1.18
CLN3-227ENST00000567495 ANKRD13CQ8N6S4 541 aa22.43■■□□□ 1.18
CLN3-227ENST00000567495 EVI5LQ96CN4 794 aa22.43■■□□□ 1.18
CLN3-227ENST00000567495 EMILIN3Q9NT22 766 aa22.43■■□□□ 1.18
CLN3-227ENST00000567495 MPHOSPH10O00566 681 aaKnown RBP22.42■■□□□ 1.18
CLN3-227ENST00000567495 CTGFP29279 349 aa22.42■■□□□ 1.18
CLN3-227ENST00000567495 C16orf86Q6ZW13 317 aa22.42■■□□□ 1.18
CLN3-227ENST00000567495 DYNLL2Q96FJ2 89 aa22.42■■□□□ 1.18
CLN3-227ENST00000567495 MYPNQ86TC9 1320 aa22.41■■□□□ 1.18
CLN3-227ENST00000567495 GSG1L2A8MUP6 293 aa22.41■■□□□ 1.18
CLN3-227ENST00000567495 GUCY1A2P33402 732 aa22.41■■□□□ 1.18
CLN3-227ENST00000567495 CDK8P49336 464 aa22.41■■□□□ 1.18
CLN3-227ENST00000567495 SEPT2Q15019 361 aa22.41■■□□□ 1.18
CLN3-227ENST00000567495 SLC44A5Q8NCS7 719 aa22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms