RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 PLEKHH3Q7Z736 793 aa20.87■□□□□ 0.93
CDH3-205ENST00000566808 MYLIPQ8WY64 445 aa20.87■□□□□ 0.93
CDH3-205ENST00000566808 PORCNQ9H237 461 aa20.87■□□□□ 0.93
CDH3-205ENST00000566808 CDK5RAP2Q96SN8 1893 aa20.87■□□□□ 0.93
CDH3-205ENST00000566808 FOCADQ5VW36 1801 aa20.87■□□□□ 0.93
CDH3-205ENST00000566808 DNM1LO00429 736 aa20.86■□□□□ 0.93
CDH3-205ENST00000566808 PEX10O60683 326 aa20.86■□□□□ 0.93
CDH3-205ENST00000566808 ASNSP08243 561 aa20.86■□□□□ 0.93
CDH3-205ENST00000566808 RTP1P59025 263 aa20.86■□□□□ 0.93
CDH3-205ENST00000566808 MECOMQ03112 1051 aa20.86■□□□□ 0.93
CDH3-205ENST00000566808 RRP1BQ14684 758 aaKnown RBP20.86■□□□□ 0.93
CDH3-205ENST00000566808 COL9A1P20849 921 aa20.85■□□□□ 0.93
CDH3-205ENST00000566808 ADORA1P30542 326 aa20.85■□□□□ 0.93
CDH3-205ENST00000566808 IL15P40933 162 aaPredicted RBP20.85■□□□□ 0.93
CDH3-205ENST00000566808 ATN1P54259 1190 aaPredicted RBP20.85■□□□□ 0.93
CDH3-205ENST00000566808 MAP2K5Q13163 448 aa20.85■□□□□ 0.93
CDH3-205ENST00000566808 SHHQ15465 462 aa20.85■□□□□ 0.93
CDH3-205ENST00000566808 MFSD14CQ5VZR4 134 aa20.85■□□□□ 0.93
CDH3-205ENST00000566808 ERICH6Q7L0X2 663 aa20.85■□□□□ 0.93
CDH3-205ENST00000566808 LPAR1Q92633 364 aa20.85■□□□□ 0.93
CDH3-205ENST00000566808 TTYH1Q9H313 450 aaPredicted RBP20.85■□□□□ 0.93
CDH3-205ENST00000566808 RBPJLQ9UBG7 517 aa20.85■□□□□ 0.93
CDH3-205ENST00000566808 DDX20Q9UHI6 824 aaKnown RBP20.85■□□□□ 0.93
CDH3-205ENST00000566808 TMEM265A0A087WTH1 108 aa20.84■□□□□ 0.93
CDH3-205ENST00000566808 C19orf81C9J6K1 198 aa20.84■□□□□ 0.93
CDH3-205ENST00000566808 ZNF384Q8TF68 577 aa20.84■□□□□ 0.93
CDH3-205ENST00000566808 PAGR1Q9BTK6 254 aa20.84■□□□□ 0.93
CDH3-205ENST00000566808 CWC22Q9HCG8 908 aaKnown RBP20.84■□□□□ 0.93
CDH3-205ENST00000566808 ZNF236Q9UL36 1845 aa20.83■□□□□ 0.93
CDH3-205ENST00000566808 GSTO1P78417 241 aa20.83■□□□□ 0.93
CDH3-205ENST00000566808 C9orf50Q5SZB4 431 aa20.83■□□□□ 0.93
CDH3-205ENST00000566808 GLRX3O76003 335 aaKnown RBP20.82■□□□□ 0.92
CDH3-205ENST00000566808 TJAP1Q5JTD0 557 aa20.82■□□□□ 0.92
CDH3-205ENST00000566808 MRPL50Q8N5N7 158 aaKnown RBP20.82■□□□□ 0.92
CDH3-205ENST00000566808 PI4KBQ9UBF8 816 aa20.82■□□□□ 0.92
CDH3-205ENST00000566808 ATP11BQ9Y2G3 1177 aa20.82■□□□□ 0.92
CDH3-205ENST00000566808 USP17L10C9JJH3 530 aa20.81■□□□□ 0.92
CDH3-205ENST00000566808 LDHCP07864 332 aa20.81■□□□□ 0.92
CDH3-205ENST00000566808 Q3C1V9 767 aa20.81■□□□□ 0.92
CDH3-205ENST00000566808 EDC3Q96F86 508 aaKnown RBP20.81■□□□□ 0.92
CDH3-205ENST00000566808 DHX36Q9H2U1 1008 aaKnown RBP20.81■□□□□ 0.92
CDH3-205ENST00000566808 GINM1Q9NU53 330 aa20.81■□□□□ 0.92
CDH3-205ENST00000566808 TNFRSF10AO00220 468 aa20.8■□□□□ 0.92
CDH3-205ENST00000566808 CCNA1P78396 465 aa20.8■□□□□ 0.92
CDH3-205ENST00000566808 TEX11Q8IYF3 940 aa20.8■□□□□ 0.92
CDH3-205ENST00000566808 PRDM5Q9NQX1 630 aaPredicted RBP20.8■□□□□ 0.92
CDH3-205ENST00000566808 FLRT1Q9NZU1 646 aa20.8■□□□□ 0.92
CDH3-205ENST00000566808 HOXC6P09630 235 aa20.79■□□□□ 0.92
CDH3-205ENST00000566808 CNGA1P29973 690 aa20.79■□□□□ 0.92
CDH3-205ENST00000566808 MVPQ14764 893 aaKnown RBP20.79■□□□□ 0.92
CDH3-205ENST00000566808 NSUN4Q96CB9 384 aaKnown RBP20.79■□□□□ 0.92
CDH3-205ENST00000566808 RABGAP1Q9Y3P9 1069 aa20.79■□□□□ 0.92
CDH3-205ENST00000566808 SLC15A5A6NIM6 579 aa20.78■□□□□ 0.92
CDH3-205ENST00000566808 UBTFL1P0CB47 393 aaPredicted RBP20.78■□□□□ 0.92
CDH3-205ENST00000566808 SNX17Q15036 470 aa20.78■□□□□ 0.92
CDH3-205ENST00000566808 POTEEQ6S8J3 1075 aa20.78■□□□□ 0.92
CDH3-205ENST00000566808 BADQ92934 168 aa20.78■□□□□ 0.92
CDH3-205ENST00000566808 ZBTB21Q9ULJ3 1066 aa20.78■□□□□ 0.92
CDH3-205ENST00000566808 KBTBD13C9JR72 458 aa20.77■□□□□ 0.92
CDH3-205ENST00000566808 ATP2B2Q01814 1243 aa20.77■□□□□ 0.92
CDH3-205ENST00000566808 ARRDC4Q8NCT1 418 aa20.77■□□□□ 0.92
CDH3-205ENST00000566808 DNAJC18Q9H819 358 aa20.77■□□□□ 0.92
CDH3-205ENST00000566808 COPRSQ9NQ92 184 aa20.77■□□□□ 0.92
CDH3-205ENST00000566808 PDLIM7Q9NR12 457 aa20.77■□□□□ 0.92
CDH3-205ENST00000566808 A0A1B0GUL7 405 aa20.76■□□□□ 0.91
CDH3-205ENST00000566808 CYBAP13498 195 aa20.76■□□□□ 0.91
CDH3-205ENST00000566808 PTPREP23469 700 aa20.76■□□□□ 0.91
CDH3-205ENST00000566808 JAG1P78504 1218 aa20.76■□□□□ 0.91
CDH3-205ENST00000566808 GRB14Q14449 540 aa20.76■□□□□ 0.91
CDH3-205ENST00000566808 SLC39A5Q6ZMH5 540 aa20.76■□□□□ 0.91
CDH3-205ENST00000566808 METTL16Q86W50 562 aaKnown RBP20.76■□□□□ 0.91
CDH3-205ENST00000566808 XAGE2Q96GT9 111 aa20.76■□□□□ 0.91
CDH3-205ENST00000566808 NOL10Q9BSC4 688 aaKnown RBP20.76■□□□□ 0.91
CDH3-205ENST00000566808 MRS2Q9HD23 443 aa20.76■□□□□ 0.91
CDH3-205ENST00000566808 PA2G4Q9UQ80 394 aaKnown RBP20.76■□□□□ 0.91
CDH3-205ENST00000566808 IVNS1ABPQ9Y6Y0 642 aa20.76■□□□□ 0.91
CDH3-205ENST00000566808 CNMDO75829 334 aa20.75■□□□□ 0.91
CDH3-205ENST00000566808 GDF11O95390 407 aa20.75■□□□□ 0.91
CDH3-205ENST00000566808 TIMM10P62072 90 aa20.75■□□□□ 0.91
CDH3-205ENST00000566808 TRIM60Q495X7 471 aa20.75■□□□□ 0.91
CDH3-205ENST00000566808 GJC2Q5T442 439 aaPredicted RBP20.75■□□□□ 0.91
CDH3-205ENST00000566808 WDR78Q5VTH9 848 aa20.75■□□□□ 0.91
CDH3-205ENST00000566808 USP17L2Q6R6M4 530 aa20.75■□□□□ 0.91
CDH3-205ENST00000566808 CRACR2BQ8N4Y2 399 aaPredicted RBP20.75■□□□□ 0.91
CDH3-205ENST00000566808 SH3RF3Q8TEJ3 882 aaPredicted RBP20.75■□□□□ 0.91
CDH3-205ENST00000566808 TRIM34Q9BYJ4 488 aa20.75■□□□□ 0.91
CDH3-205ENST00000566808 EMILIN3Q9NT22 766 aa20.75■□□□□ 0.91
CDH3-205ENST00000566808 RAI14Q9P0K7 980 aa20.75■□□□□ 0.91
CDH3-205ENST00000566808 HMG20BQ9P0W2 317 aa20.75■□□□□ 0.91
CDH3-205ENST00000566808 AKAP2Q9Y2D5 859 aa20.75■□□□□ 0.91
CDH3-205ENST00000566808 CYP2C19P33261 490 aa20.74■□□□□ 0.91
CDH3-205ENST00000566808 SHROOM1Q2M3G4 852 aaPredicted RBP20.74■□□□□ 0.91
CDH3-205ENST00000566808 USP38Q8NB14 1042 aa20.74■□□□□ 0.91
CDH3-205ENST00000566808 SPATA5Q8NB90 893 aa20.74■□□□□ 0.91
CDH3-205ENST00000566808 TRPV1Q8NER1 839 aa20.74■□□□□ 0.91
CDH3-205ENST00000566808 C12orf42Q96LP6 360 aa20.74■□□□□ 0.91
CDH3-205ENST00000566808 RNPC3Q96LT9 517 aaKnown RBP20.74■□□□□ 0.91
CDH3-205ENST00000566808 NDUFB9Q9Y6M9 179 aa20.74■□□□□ 0.91
CDH3-205ENST00000566808 CHD9Q3L8U1 2897 aa20.74■□□□□ 0.91
CDH3-205ENST00000566808 IGHA2P01877 340 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms