RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 PDE4AP27815 886 aa20.75■□□□□ 0.91
CLN3-217ENST00000565354 TGFBRAP1Q8WUH2 860 aa20.75■□□□□ 0.91
CLN3-217ENST00000565354 PPP4R2Q9NY27 417 aa20.75■□□□□ 0.91
CLN3-217ENST00000565354 INPP5BP32019 993 aa20.74■□□□□ 0.91
CLN3-217ENST00000565354 MIGA2Q7L4E1 593 aa20.74■□□□□ 0.91
CLN3-217ENST00000565354 MAPKAPK5Q8IW41 473 aa20.74■□□□□ 0.91
CLN3-217ENST00000565354 CRNKL1Q9BZJ0 848 aaKnown RBP20.74■□□□□ 0.91
CLN3-217ENST00000565354 PRO3102Q9H379 93 aa20.74■□□□□ 0.91
CLN3-217ENST00000565354 DDX4Q9NQI0 724 aaKnown RBP20.74■□□□□ 0.91
CLN3-217ENST00000565354 KCNH4Q9UQ05 1017 aa20.74■□□□□ 0.91
CLN3-217ENST00000565354 MYPNQ86TC9 1320 aa20.74■□□□□ 0.91
CLN3-217ENST00000565354 RFX7Q2KHR2 1363 aa20.73■□□□□ 0.91
CLN3-217ENST00000565354 MBD4O95243 580 aa20.73■□□□□ 0.91
CLN3-217ENST00000565354 SLFNL1Q499Z3 407 aa20.73■□□□□ 0.91
CLN3-217ENST00000565354 RNF208Q9H0X6 261 aa20.73■□□□□ 0.91
CLN3-217ENST00000565354 OSBPL5Q9H0X9 879 aaPredicted RBP20.73■□□□□ 0.91
CLN3-217ENST00000565354 NPM3O75607 178 aaKnown RBP20.72■□□□□ 0.91
CLN3-217ENST00000565354 ZFPM1Q8IX07 1006 aa20.72■□□□□ 0.91
CLN3-217ENST00000565354 APPBP2Q92624 585 aa20.72■□□□□ 0.91
CLN3-217ENST00000565354 RIOK1Q9BRS2 568 aaKnown RBP20.72■□□□□ 0.91
CLN3-217ENST00000565354 ARMT1Q9H993 441 aa20.72■□□□□ 0.91
CLN3-217ENST00000565354 BIN2Q9UBW5 565 aaPredicted RBP20.72■□□□□ 0.91
CLN3-217ENST00000565354 ZNF112Q9UJU3 913 aa20.72■□□□□ 0.91
CLN3-217ENST00000565354 NR2E3Q9Y5X4 410 aa20.72■□□□□ 0.91
CLN3-217ENST00000565354 FLT1P17948 1338 aa20.72■□□□□ 0.91
CLN3-217ENST00000565354 COL6A3P12111 3177 aa20.71■□□□□ 0.91
CLN3-217ENST00000565354 LAMA3Q16787 3333 aa20.71■□□□□ 0.91
CLN3-217ENST00000565354 CHGBP05060 677 aa20.71■□□□□ 0.91
CLN3-217ENST00000565354 UBXN2AP68543 259 aa20.71■□□□□ 0.91
CLN3-217ENST00000565354 MOGSQ13724 837 aa20.71■□□□□ 0.91
CLN3-217ENST00000565354 LCORLQ8N3X6 602 aa20.71■□□□□ 0.91
CLN3-217ENST00000565354 CUL9Q8IWT3 2517 aa20.7■□□□□ 0.9
CLN3-217ENST00000565354 A0A0C4DFX4 3053 aa20.7■□□□□ 0.9
CLN3-217ENST00000565354 PRKCZQ05513 592 aa20.7■□□□□ 0.9
CLN3-217ENST00000565354 DDRGK1Q96HY6 314 aa20.7■□□□□ 0.9
CLN3-217ENST00000565354 DDTLA6NHG4 134 aaPredicted RBP20.69■□□□□ 0.9
CLN3-217ENST00000565354 FARP2O94887 1054 aaPredicted RBP20.69■□□□□ 0.9
CLN3-217ENST00000565354 HLA-DOAP06340 250 aa20.69■□□□□ 0.9
CLN3-217ENST00000565354 BCRP11274 1271 aa20.69■□□□□ 0.9
CLN3-217ENST00000565354 FCGRTP55899 365 aa20.69■□□□□ 0.9
CLN3-217ENST00000565354 TTC22Q5TAA0 569 aa20.69■□□□□ 0.9
CLN3-217ENST00000565354 SLAIN1Q8ND83 568 aa20.69■□□□□ 0.9
CLN3-217ENST00000565354 U2AF1L4Q8WU68 220 aaKnown RBP20.69■□□□□ 0.9
CLN3-217ENST00000565354 PARK7Q99497 189 aaKnown RBP20.69■□□□□ 0.9
CLN3-217ENST00000565354 TRIM34Q9BYJ4 488 aa20.69■□□□□ 0.9
CLN3-217ENST00000565354 PUS7LQ9H0K6 701 aaKnown RBP20.69■□□□□ 0.9
CLN3-217ENST00000565354 DHX36Q9H2U1 1008 aaKnown RBP20.69■□□□□ 0.9
CLN3-217ENST00000565354 SAP30BPQ9UHR5 308 aaKnown RBP20.69■□□□□ 0.9
CLN3-217ENST00000565354 CDK5RAP2Q96SN8 1893 aa20.69■□□□□ 0.9
CLN3-217ENST00000565354 NOL9Q5SY16 702 aaKnown RBP20.68■□□□□ 0.9
CLN3-217ENST00000565354 SLC4A4Q9Y6R1 1079 aa20.68■□□□□ 0.9
CLN3-217ENST00000565354 FOCADQ5VW36 1801 aa20.68■□□□□ 0.9
CLN3-217ENST00000565354 COL2A1P02458 1487 aaPredicted RBP20.68■□□□□ 0.9
CLN3-217ENST00000565354 SH3BP5LQ7L8J4 393 aa20.67■□□□□ 0.9
CLN3-217ENST00000565354 CRACR2BQ8N4Y2 399 aaPredicted RBP20.67■□□□□ 0.9
CLN3-217ENST00000565354 SLC17A8Q8NDX2 589 aa20.67■□□□□ 0.9
CLN3-217ENST00000565354 SDR42E1Q8WUS8 393 aa20.67■□□□□ 0.9
CLN3-217ENST00000565354 OSBP2Q969R2 916 aa20.67■□□□□ 0.9
CLN3-217ENST00000565354 UNC93B1Q9H1C4 597 aa20.67■□□□□ 0.9
CLN3-217ENST00000565354 A0A1W2PPC1 479 aa20.66■□□□□ 0.9
CLN3-217ENST00000565354 CXCL11O14625 94 aa20.66■□□□□ 0.9
CLN3-217ENST00000565354 GPAA1O43292 621 aa20.66■□□□□ 0.9
CLN3-217ENST00000565354 SGPL1O95470 568 aa20.66■□□□□ 0.9
CLN3-217ENST00000565354 POLR3DP05423 398 aaPredicted RBP20.66■□□□□ 0.9
CLN3-217ENST00000565354 CYP2C8P10632 490 aa20.66■□□□□ 0.9
CLN3-217ENST00000565354 ZMYM1Q5SVZ6 1142 aa20.66■□□□□ 0.9
CLN3-217ENST00000565354 GPAT2Q6NUI2 795 aa20.66■□□□□ 0.9
CLN3-217ENST00000565354 TICAM2Q86XR7 235 aa20.66■□□□□ 0.9
CLN3-217ENST00000565354 AMOTL1Q8IY63 956 aa20.66■□□□□ 0.9
CLN3-217ENST00000565354 PI4KBQ9UBF8 816 aa20.66■□□□□ 0.9
CLN3-217ENST00000565354 PALD1Q9ULE6 856 aa20.66■□□□□ 0.9
CLN3-217ENST00000565354 GABRQQ9UN88 632 aa20.66■□□□□ 0.9
CLN3-217ENST00000565354 ATRNL1Q5VV63 1379 aa20.66■□□□□ 0.9
CLN3-217ENST00000565354 NAV1Q8NEY1 1877 aa20.66■□□□□ 0.9
CLN3-217ENST00000565354 DOCK3Q8IZD9 2030 aa20.65■□□□□ 0.9
CLN3-217ENST00000565354 PTPRFP10586 1907 aa20.65■□□□□ 0.9
CLN3-217ENST00000565354 M0R2C6 588 aa20.65■□□□□ 0.9
CLN3-217ENST00000565354 HIP1O00291 1037 aa20.65■□□□□ 0.9
CLN3-217ENST00000565354 DLL1O00548 723 aa20.65■□□□□ 0.9
CLN3-217ENST00000565354 GNAT2P19087 354 aa20.65■□□□□ 0.9
CLN3-217ENST00000565354 TTC6Q86TZ1 520 aa20.65■□□□□ 0.9
CLN3-217ENST00000565354 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.65■□□□□ 0.9
CLN3-217ENST00000565354 DIAPH3Q9NSV4 1193 aa20.65■□□□□ 0.9
CLN3-217ENST00000565354 ATP8A2Q9NTI2 1148 aa20.65■□□□□ 0.9
CLN3-217ENST00000565354 MCM9Q9NXL9 1143 aa20.65■□□□□ 0.9
CLN3-217ENST00000565354 MYH1P12882 1939 aa20.65■□□□□ 0.9
CLN3-217ENST00000565354 PRKAB2O43741 272 aa20.64■□□□□ 0.89
CLN3-217ENST00000565354 ADCY3O60266 1144 aa20.64■□□□□ 0.89
CLN3-217ENST00000565354 APPP05067 770 aa20.64■□□□□ 0.89
CLN3-217ENST00000565354 GSPT1P15170 499 aaKnown RBP20.64■□□□□ 0.89
CLN3-217ENST00000565354 STRBPQ96SI9 672 aaKnown RBP20.64■□□□□ 0.89
CLN3-217ENST00000565354 SEC62Q99442 399 aaKnown RBP20.64■□□□□ 0.89
CLN3-217ENST00000565354 DCP1AQ9NPI6 582 aaPredicted RBP20.64■□□□□ 0.89
CLN3-217ENST00000565354 HELLSQ9NRZ9 838 aa20.64■□□□□ 0.89
CLN3-217ENST00000565354 ALPK3Q96L96 1907 aa20.64■□□□□ 0.89
CLN3-217ENST00000565354 EVI5O60447 810 aa20.63■□□□□ 0.89
CLN3-217ENST00000565354 CAPN2P17655 700 aa20.63■□□□□ 0.89
CLN3-217ENST00000565354 SDSP20132 328 aa20.63■□□□□ 0.89
CLN3-217ENST00000565354 HERC5Q9UII4 1024 aaKnown RBP20.63■□□□□ 0.89
CLN3-217ENST00000565354 FLT3LGP49771 235 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms