RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 SPATA31A5Q5VU36 1347 aa7.81□□□□□ -1.16
VPS35-204ENST00000563884 SPATA31A7Q8IWB4 1347 aa7.81□□□□□ -1.16
VPS35-204ENST00000563884 GAS2O43903 313 aaKnown RBP7.81□□□□□ -1.16
VPS35-204ENST00000563884 PHACTR2O75167 634 aa7.81□□□□□ -1.16
VPS35-204ENST00000563884 ZBTB7AO95365 584 aa7.81□□□□□ -1.16
VPS35-204ENST00000563884 XPCQ01831 940 aaPredicted RBP7.81□□□□□ -1.16
VPS35-204ENST00000563884 FKBP4Q02790 459 aaKnown RBP eCLIP7.81□□□□□ -1.16
VPS35-204ENST00000563884 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.81□□□□□ -1.16
VPS35-204ENST00000563884 TMEM102Q8N9M5 508 aaPredicted RBP7.81□□□□□ -1.16
VPS35-204ENST00000563884 FAM83CQ9BQN1 747 aa7.81□□□□□ -1.16
VPS35-204ENST00000563884 EGFL7Q9UHF1 273 aa7.81□□□□□ -1.16
VPS35-204ENST00000563884 QSER1Q2KHR3 1735 aa7.81□□□□□ -1.16
VPS35-204ENST00000563884 KIAA1324LA8MWY0 1029 aaPredicted RBP7.8□□□□□ -1.16
VPS35-204ENST00000563884 EREGO14944 169 aa7.8□□□□□ -1.16
VPS35-204ENST00000563884 GRIN3BO60391 1043 aa7.8□□□□□ -1.16
VPS35-204ENST00000563884 FAM13AO94988 1023 aa7.8□□□□□ -1.16
VPS35-204ENST00000563884 PDE3BQ13370 1112 aa7.8□□□□□ -1.16
VPS35-204ENST00000563884 IKBKEQ14164 716 aa7.8□□□□□ -1.16
VPS35-204ENST00000563884 ECM1Q16610 540 aa7.8□□□□□ -1.16
VPS35-204ENST00000563884 HGSNATQ68CP4 663 aa7.8□□□□□ -1.16
VPS35-204ENST00000563884 INTS5Q6P9B9 1019 aaKnown RBP7.8□□□□□ -1.16
VPS35-204ENST00000563884 BSNDQ8WZ55 320 aa7.8□□□□□ -1.16
VPS35-204ENST00000563884 NXPE3Q969Y0 559 aa7.8□□□□□ -1.16
VPS35-204ENST00000563884 ZKSCAN3Q9BRR0 538 aa7.8□□□□□ -1.16
VPS35-204ENST00000563884 MTFR1LQ9H019 292 aa7.8□□□□□ -1.16
VPS35-204ENST00000563884 KNDC1Q76NI1 1749 aa7.8□□□□□ -1.16
VPS35-204ENST00000563884 CRYBG1Q9Y4K1 1723 aa7.8□□□□□ -1.16
VPS35-204ENST00000563884 COL24A1Q17RW2 1714 aa7.79□□□□□ -1.16
VPS35-204ENST00000563884 ARHGEF28Q8N1W1 1705 aaKnown RBP7.79□□□□□ -1.16
VPS35-204ENST00000563884 TNFRSF21O75509 655 aa7.79□□□□□ -1.16
VPS35-204ENST00000563884 EDN3P14138 238 aa7.79□□□□□ -1.16
VPS35-204ENST00000563884 IRAK1P51617 712 aa7.79□□□□□ -1.16
VPS35-204ENST00000563884 SHKBP1Q8TBC3 707 aa7.79□□□□□ -1.16
VPS35-204ENST00000563884 ASAP3Q8TDY4 903 aa7.79□□□□□ -1.16
VPS35-204ENST00000563884 USP26Q9BXU7 913 aa7.79□□□□□ -1.16
VPS35-204ENST00000563884 BTG4Q9NY30 223 aa7.79□□□□□ -1.16
VPS35-204ENST00000563884 HIF3AQ9Y2N7 669 aa7.79□□□□□ -1.16
VPS35-204ENST00000563884 DAPK1P53355 1430 aa7.78□□□□□ -1.16
VPS35-204ENST00000563884 SOX1O00570 391 aaPredicted RBP7.78□□□□□ -1.16
VPS35-204ENST00000563884 GP2P55259 537 aaKnown RBP7.78□□□□□ -1.16
VPS35-204ENST00000563884 EHHADHQ08426 723 aa7.78□□□□□ -1.16
VPS35-204ENST00000563884 NUTM2GQ5VZR2 741 aa7.78□□□□□ -1.16
VPS35-204ENST00000563884 SNX29Q8TEQ0 813 aa7.78□□□□□ -1.16
VPS35-204ENST00000563884 SBNO1A3KN83 1393 aa7.78□□□□□ -1.16
VPS35-204ENST00000563884 ROBO2Q9HCK4 1378 aa7.78□□□□□ -1.16
VPS35-204ENST00000563884 ALS2Q96Q42 1657 aa7.78□□□□□ -1.16
VPS35-204ENST00000563884 MEGF11A6BM72 1044 aa7.77□□□□□ -1.17
VPS35-204ENST00000563884 PRR19A6NJB7 356 aa7.77□□□□□ -1.17
VPS35-204ENST00000563884 FZD6O60353 706 aa7.77□□□□□ -1.17
VPS35-204ENST00000563884 ICMTO60725 284 aa7.77□□□□□ -1.17
VPS35-204ENST00000563884 USP5P45974 858 aa7.77□□□□□ -1.17
VPS35-204ENST00000563884 VN1R5Q7Z5H4 357 aa7.77□□□□□ -1.17
VPS35-204ENST00000563884 C12orf50Q8NA57 414 aaPredicted RBP7.77□□□□□ -1.17
VPS35-204ENST00000563884 STK32BQ9NY57 414 aa7.77□□□□□ -1.17
VPS35-204ENST00000563884 FOXD3Q9UJU5 478 aaPredicted RBP7.77□□□□□ -1.17
VPS35-204ENST00000563884 WWC3Q9ULE0 1092 aa7.77□□□□□ -1.17
VPS35-204ENST00000563884 OAS3Q9Y6K5 1087 aaKnown RBP7.77□□□□□ -1.17
VPS35-204ENST00000563884 PEAK1Q9H792 1746 aa7.77□□□□□ -1.17
VPS35-204ENST00000563884 TRPM3Q9HCF6 1732 aaPredicted RBP7.77□□□□□ -1.17
VPS35-204ENST00000563884 NAIPQ13075 1403 aa7.77□□□□□ -1.17
VPS35-204ENST00000563884 WNK3Q9BYP7 1800 aa7.76□□□□□ -1.17
VPS35-204ENST00000563884 DHX57Q6P158 1386 aaKnown RBP7.76□□□□□ -1.17
VPS35-204ENST00000563884 WDR64B1ANS9 1081 aa7.76□□□□□ -1.17
VPS35-204ENST00000563884 PLSCR1O15162 318 aa7.76□□□□□ -1.17
VPS35-204ENST00000563884 PAX4O43316 350 aa7.76□□□□□ -1.17
VPS35-204ENST00000563884 MAP4P27816 1152 aaKnown RBP7.76□□□□□ -1.17
VPS35-204ENST00000563884 ZNF326Q5BKZ1 582 aaKnown RBP7.76□□□□□ -1.17
VPS35-204ENST00000563884 KRT28Q7Z3Y7 464 aa7.76□□□□□ -1.17
VPS35-204ENST00000563884 KRTAP1-3Q8IUG1 177 aa7.76□□□□□ -1.17
VPS35-204ENST00000563884 MFSD14AQ96MC6 490 aa7.76□□□□□ -1.17
VPS35-204ENST00000563884 KRTAP4-12Q9BQ66 201 aa7.76□□□□□ -1.17
VPS35-204ENST00000563884 CLTCL1P53675 1640 aa7.76□□□□□ -1.17
VPS35-204ENST00000563884 GOLGB1Q14789 3259 aaKnown RBP7.76□□□□□ -1.17
VPS35-204ENST00000563884 OVOS2A0A0G2JMS6 1433 aa7.76□□□□□ -1.17
VPS35-204ENST00000563884 OVOS2A0A0J9YW53 1432 aa7.76□□□□□ -1.17
VPS35-204ENST00000563884 OVOS2Q6IE36 1432 aa7.76□□□□□ -1.17
VPS35-204ENST00000563884 SPATA31A1Q5TZJ5 1347 aa7.76□□□□□ -1.17
VPS35-204ENST00000563884 TULP4Q9NRJ4 1543 aa7.75□□□□□ -1.17
VPS35-204ENST00000563884 ABL1P00519 1130 aa7.75□□□□□ -1.17
VPS35-204ENST00000563884 SPINK2P20155 84 aa7.75□□□□□ -1.17
VPS35-204ENST00000563884 SGO2Q562F6 1265 aa7.75□□□□□ -1.17
VPS35-204ENST00000563884 CYP4F12Q9HCS2 524 aa7.75□□□□□ -1.17
VPS35-204ENST00000563884 KIAA1210Q9ULL0 1709 aa7.75□□□□□ -1.17
VPS35-204ENST00000563884 PHRF1Q9P1Y6 1649 aaKnown RBP7.74□□□□□ -1.17
VPS35-204ENST00000563884 SERPINB4P48594 390 aa7.74□□□□□ -1.17
VPS35-204ENST00000563884 ZNF211Q13398 564 aaPredicted RBP7.74□□□□□ -1.17
VPS35-204ENST00000563884 DTX1Q86Y01 620 aa7.74□□□□□ -1.17
VPS35-204ENST00000563884 JMYQ8N9B5 988 aa7.74□□□□□ -1.17
VPS35-204ENST00000563884 GIMAP7Q8NHV1 300 aa7.74□□□□□ -1.17
VPS35-204ENST00000563884 ANO2Q9NQ90 1003 aa7.74□□□□□ -1.17
VPS35-204ENST00000563884 LATS2Q9NRM7 1088 aa7.74□□□□□ -1.17
VPS35-204ENST00000563884 ATG3Q9NT62 314 aa7.74□□□□□ -1.17
VPS35-204ENST00000563884 NRXN1Q9ULB1 1477 aa7.74□□□□□ -1.17
VPS35-204ENST00000563884 PPLO60437 1756 aa7.74□□□□□ -1.17
VPS35-204ENST00000563884 ADCY9O60503 1353 aa7.73□□□□□ -1.17
VPS35-204ENST00000563884 ANKRD50Q9ULJ7 1429 aa7.73□□□□□ -1.17
VPS35-204ENST00000563884 LOC100289279A0A1B0GTE1 492 aa7.73□□□□□ -1.17
VPS35-204ENST00000563884 ADAMTS4O75173 837 aa7.73□□□□□ -1.17
VPS35-204ENST00000563884 WNT11O96014 354 aa7.73□□□□□ -1.17
VPS35-204ENST00000563884 ESRRAP11474 423 aaPredicted RBP7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms