RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 TLR2O60603 784 aa16.09■□□□□ 0.17
CLK3-213ENST00000563842 GNAT2P19087 354 aa16.09■□□□□ 0.17
CLK3-213ENST00000563842 PLCD1P51178 756 aa16.09■□□□□ 0.17
CLK3-213ENST00000563842 CERKLQ49MI3 558 aaPredicted RBP16.09■□□□□ 0.17
CLK3-213ENST00000563842 B4GALNT3Q6L9W6 998 aa16.09■□□□□ 0.17
CLK3-213ENST00000563842 TATDN1Q6P1N9 297 aa16.09■□□□□ 0.17
CLK3-213ENST00000563842 GADL1Q6ZQY3 521 aa16.09■□□□□ 0.17
CLK3-213ENST00000563842 CHD1LQ86WJ1 897 aa16.09■□□□□ 0.17
CLK3-213ENST00000563842 TICAM2Q86XR7 235 aa16.09■□□□□ 0.17
CLK3-213ENST00000563842 WDR18Q9BV38 432 aa16.09■□□□□ 0.17
CLK3-213ENST00000563842 CABP5Q9NP86 173 aa16.09■□□□□ 0.17
CLK3-213ENST00000563842 SLC45A1Q9Y2W3 748 aa16.09■□□□□ 0.17
CLK3-213ENST00000563842 LOC285556D6RIA3 1793 aa16.08■□□□□ 0.17
CLK3-213ENST00000563842 NUCB1Q02818 461 aa16.08■□□□□ 0.16
CLK3-213ENST00000563842 SPP2Q13103 211 aa16.08■□□□□ 0.16
CLK3-213ENST00000563842 PABPC4Q13310 644 aaKnown RBP eCLIP16.08■□□□□ 0.16
CLK3-213ENST00000563842 RRP1BQ14684 758 aaKnown RBP16.08■□□□□ 0.16
CLK3-213ENST00000563842 SLFNL1Q499Z3 407 aa16.08■□□□□ 0.16
CLK3-213ENST00000563842 PROCA1Q8NCQ7 364 aaPredicted RBP16.08■□□□□ 0.16
CLK3-213ENST00000563842 EVI5LQ96CN4 794 aa16.08■□□□□ 0.16
CLK3-213ENST00000563842 STRBPQ96SI9 672 aaKnown RBP16.08■□□□□ 0.16
CLK3-213ENST00000563842 PARK7Q99497 189 aaKnown RBP16.08■□□□□ 0.16
CLK3-213ENST00000563842 SWAP70Q9UH65 585 aa16.08■□□□□ 0.16
CLK3-213ENST00000563842 ZBTB21Q9ULJ3 1066 aa16.08■□□□□ 0.16
CLK3-213ENST00000563842 CCDC85CA6NKD9 419 aa16.07■□□□□ 0.16
CLK3-213ENST00000563842 C19orf81C9J6K1 198 aa16.07■□□□□ 0.16
CLK3-213ENST00000563842 PRKAB2O43741 272 aa16.07■□□□□ 0.16
CLK3-213ENST00000563842 GDF11O95390 407 aa16.07■□□□□ 0.16
CLK3-213ENST00000563842 MOGSQ13724 837 aa16.07■□□□□ 0.16
CLK3-213ENST00000563842 GIMAP6Q6P9H5 292 aa16.07■□□□□ 0.16
CLK3-213ENST00000563842 OSBP2Q969R2 916 aa16.07■□□□□ 0.16
CLK3-213ENST00000563842 PNMA3Q9UL41 463 aa16.07■□□□□ 0.16
CLK3-213ENST00000563842 USP17L10C9JJH3 530 aa16.06■□□□□ 0.16
CLK3-213ENST00000563842 CHGBP05060 677 aa16.06■□□□□ 0.16
CLK3-213ENST00000563842 IRX6P78412 446 aaPredicted RBP16.06■□□□□ 0.16
CLK3-213ENST00000563842 GABPAQ06546 454 aa16.06■□□□□ 0.16
CLK3-213ENST00000563842 KIF22Q14807 665 aa16.06■□□□□ 0.16
CLK3-213ENST00000563842 ABCB5Q2M3G0 1257 aa16.06■□□□□ 0.16
CLK3-213ENST00000563842 SH3D19Q5HYK7 790 aa16.06■□□□□ 0.16
CLK3-213ENST00000563842 GPAT2Q6NUI2 795 aa16.06■□□□□ 0.16
CLK3-213ENST00000563842 CCDC84Q86UT8 332 aaPredicted RBP16.06■□□□□ 0.16
CLK3-213ENST00000563842 TMOD4Q9NZQ9 345 aa16.06■□□□□ 0.16
CLK3-213ENST00000563842 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.06■□□□□ 0.16
CLK3-213ENST00000563842 ARPP21Q9UBL0 812 aaPredicted RBP16.06■□□□□ 0.16
CLK3-213ENST00000563842 AGTPBP1Q9UPW5 1226 aa16.06■□□□□ 0.16
CLK3-213ENST00000563842 USP17L12C9JPN9 530 aa16.05■□□□□ 0.16
CLK3-213ENST00000563842 USP17L21D6R901 530 aa16.05■□□□□ 0.16
CLK3-213ENST00000563842 GPAA1O43292 621 aa16.05■□□□□ 0.16
CLK3-213ENST00000563842 GH2P01242 217 aa16.05■□□□□ 0.16
CLK3-213ENST00000563842 SHMT1P34896 483 aa16.05■□□□□ 0.16
CLK3-213ENST00000563842 BACE1P56817 501 aa16.05■□□□□ 0.16
CLK3-213ENST00000563842 C12orf60Q5U649 245 aa16.05■□□□□ 0.16
CLK3-213ENST00000563842 OSBPL3Q9H4L5 887 aa16.05■□□□□ 0.16
CLK3-213ENST00000563842 MGAMO43451 1857 aa16.05■□□□□ 0.16
CLK3-213ENST00000563842 HMGCS2P54868 508 aa16.04■□□□□ 0.16
CLK3-213ENST00000563842 SBK1Q52WX2 424 aa16.04■□□□□ 0.16
CLK3-213ENST00000563842 ZMYM1Q5SVZ6 1142 aa16.04■□□□□ 0.16
CLK3-213ENST00000563842 FBXO46Q6PJ61 603 aaPredicted RBP16.04■□□□□ 0.16
CLK3-213ENST00000563842 C17orf99Q6UX52 265 aa16.04■□□□□ 0.16
CLK3-213ENST00000563842 CD99L2Q8TCZ2 262 aa16.04■□□□□ 0.16
CLK3-213ENST00000563842 CCDC17Q96LX7 622 aa16.04■□□□□ 0.16
CLK3-213ENST00000563842 NACAP1Q9BZK3 213 aa16.04■□□□□ 0.16
CLK3-213ENST00000563842 EFCC1Q9HA90 598 aa16.04■□□□□ 0.16
CLK3-213ENST00000563842 TRIM17Q9Y577 477 aa16.04■□□□□ 0.16
CLK3-213ENST00000563842 GSG1L2A8MUP6 293 aa16.03■□□□□ 0.16
CLK3-213ENST00000563842 TRIM6-TRIM34B2RNG4 842 aa16.03■□□□□ 0.16
CLK3-213ENST00000563842 PATL2C9JE40 543 aaKnown RBP16.03■□□□□ 0.16
CLK3-213ENST00000563842 GNRH1P01148 92 aa16.03■□□□□ 0.16
CLK3-213ENST00000563842 APPP05067 770 aa16.03■□□□□ 0.16
CLK3-213ENST00000563842 OSBPP22059 807 aa16.03■□□□□ 0.16
CLK3-213ENST00000563842 MTMR2Q13614 643 aa16.03■□□□□ 0.16
CLK3-213ENST00000563842 RAB3GAP1Q15042 981 aa16.03■□□□□ 0.16
CLK3-213ENST00000563842 CTR9Q6PD62 1173 aa16.03■□□□□ 0.16
CLK3-213ENST00000563842 PLEKHM2Q8IWE5 1019 aa16.03■□□□□ 0.16
CLK3-213ENST00000563842 SMCR8Q8TEV9 937 aaPredicted RBP16.03■□□□□ 0.16
CLK3-213ENST00000563842 PDE4DIPQ5VU43 2346 aa16.02■□□□□ 0.16
CLK3-213ENST00000563842 M0R2C6 588 aa16.02■□□□□ 0.16
CLK3-213ENST00000563842 MPHOSPH10O00566 681 aaKnown RBP16.02■□□□□ 0.16
CLK3-213ENST00000563842 CYP2D6P10635 497 aa16.02■□□□□ 0.16
CLK3-213ENST00000563842 TDO2P48775 406 aa16.02■□□□□ 0.16
CLK3-213ENST00000563842 USP14P54578 494 aa16.02■□□□□ 0.16
CLK3-213ENST00000563842 JAG1P78504 1218 aa16.02■□□□□ 0.16
CLK3-213ENST00000563842 USP17L2Q6R6M4 530 aa16.02■□□□□ 0.16
CLK3-213ENST00000563842 TMEM179Q6ZVK1 233 aa16.02■□□□□ 0.16
CLK3-213ENST00000563842 C16orf86Q6ZW13 317 aa16.02■□□□□ 0.16
CLK3-213ENST00000563842 OTOP1Q7RTM1 612 aa16.02■□□□□ 0.16
CLK3-213ENST00000563842 FEZ1Q99689 392 aa16.02■□□□□ 0.16
CLK3-213ENST00000563842 ZNF287Q9HBT7 754 aa16.02■□□□□ 0.16
CLK3-213ENST00000563842 HELLSQ9NRZ9 838 aa16.02■□□□□ 0.16
CLK3-213ENST00000563842 CPA4Q9UI42 421 aa16.02■□□□□ 0.16
CLK3-213ENST00000563842 ADGRA2Q96PE1 1338 aa16.01■□□□□ 0.15
CLK3-213ENST00000563842 CYP2C8P10632 490 aa16.01■□□□□ 0.15
CLK3-213ENST00000563842 CDK8P49336 464 aa16.01■□□□□ 0.15
CLK3-213ENST00000563842 LACTBP83111 547 aaPredicted RBP16.01■□□□□ 0.15
CLK3-213ENST00000563842 RILPL2Q969X0 211 aa16.01■□□□□ 0.15
CLK3-213ENST00000563842 DYNLL2Q96FJ2 89 aa16.01■□□□□ 0.15
CLK3-213ENST00000563842 MINDY4BA8MYZ0 360 aa16■□□□□ 0.15
CLK3-213ENST00000563842 HOXD10P28358 340 aa16■□□□□ 0.15
CLK3-213ENST00000563842 HOXA7P31268 230 aaPredicted RBP16■□□□□ 0.15
CLK3-213ENST00000563842 GCLCP48506 637 aaPredicted RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms