RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 CHD9Q3L8U1 2897 aa12.9□□□□□ -0.34
SF3B3-204ENST00000563739 IL15P40933 162 aaPredicted RBP12.9□□□□□ -0.34
SF3B3-204ENST00000563739 TBC1D9Q6ZT07 1266 aa12.9□□□□□ -0.34
SF3B3-204ENST00000563739 TRPV1Q8NER1 839 aa12.9□□□□□ -0.34
SF3B3-204ENST00000563739 FAM161BQ96MY7 647 aa12.9□□□□□ -0.34
SF3B3-204ENST00000563739 RAPGEFL1Q9UHV5 662 aa12.9□□□□□ -0.34
SF3B3-204ENST00000563739 A0A1B0GUL7 405 aa12.89□□□□□ -0.35
SF3B3-204ENST00000563739 USP17L5A8MUK1 530 aa12.89□□□□□ -0.35
SF3B3-204ENST00000563739 GPR142Q7Z601 462 aa12.89□□□□□ -0.35
SF3B3-204ENST00000563739 ADGRA1Q86SQ6 560 aa12.89□□□□□ -0.35
SF3B3-204ENST00000563739 SH3RF3Q8TEJ3 882 aaPredicted RBP12.89□□□□□ -0.35
SF3B3-204ENST00000563739 XAGE2Q96GT9 111 aa12.89□□□□□ -0.35
SF3B3-204ENST00000563739 MEIS3Q99687 375 aa12.89□□□□□ -0.35
SF3B3-204ENST00000563739 TTYH1Q9H313 450 aaPredicted RBP12.89□□□□□ -0.35
SF3B3-204ENST00000563739 GNL3LQ9NVN8 582 aaKnown RBP12.89□□□□□ -0.35
SF3B3-204ENST00000563739 ZKSCAN1P17029 563 aaPredicted RBP12.88□□□□□ -0.35
SF3B3-204ENST00000563739 BACE1P56817 501 aa12.88□□□□□ -0.35
SF3B3-204ENST00000563739 ERVK-9P63128 1117 aa12.88□□□□□ -0.35
SF3B3-204ENST00000563739 ERVK-24P63145 666 aa12.88□□□□□ -0.35
SF3B3-204ENST00000563739 TFCP2Q12800 502 aa12.88□□□□□ -0.35
SF3B3-204ENST00000563739 C9orf50Q5SZB4 431 aa12.88□□□□□ -0.35
SF3B3-204ENST00000563739 ZGPATQ8N5A5 531 aaKnown RBP12.88□□□□□ -0.35
SF3B3-204ENST00000563739 SOCS4Q8WXH5 440 aa12.88□□□□□ -0.35
SF3B3-204ENST00000563739 APBA2Q99767 749 aa12.88□□□□□ -0.35
SF3B3-204ENST00000563739 NUDT12Q9BQG2 462 aa12.88□□□□□ -0.35
SF3B3-204ENST00000563739 TBC1D2Q9BYX2 928 aa12.88□□□□□ -0.35
SF3B3-204ENST00000563739 EMILIN3Q9NT22 766 aa12.88□□□□□ -0.35
SF3B3-204ENST00000563739 REV3LO60673 3130 aa12.88□□□□□ -0.35
SF3B3-204ENST00000563739 GDF11O95390 407 aa12.87□□□□□ -0.35
SF3B3-204ENST00000563739 COL9A1P20849 921 aa12.87□□□□□ -0.35
SF3B3-204ENST00000563739 ARID4AP29374 1257 aaPredicted RBP12.87□□□□□ -0.35
SF3B3-204ENST00000563739 MCAMP43121 646 aa12.87□□□□□ -0.35
SF3B3-204ENST00000563739 CDX2Q99626 313 aaPredicted RBP12.87□□□□□ -0.35
SF3B3-204ENST00000563739 UBTFL1P0CB47 393 aaPredicted RBP12.86□□□□□ -0.35
SF3B3-204ENST00000563739 PABPC4Q13310 644 aaKnown RBP eCLIP12.86□□□□□ -0.35
SF3B3-204ENST00000563739 ERICH6Q7L0X2 663 aa12.86□□□□□ -0.35
SF3B3-204ENST00000563739 GPRC5AQ8NFJ5 357 aa12.86□□□□□ -0.35
SF3B3-204ENST00000563739 NPLOC4Q8TAT6 608 aa12.86□□□□□ -0.35
SF3B3-204ENST00000563739 HERC5Q9UII4 1024 aaKnown RBP12.86□□□□□ -0.35
SF3B3-204ENST00000563739 ZBTB21Q9ULJ3 1066 aa12.86□□□□□ -0.35
SF3B3-204ENST00000563739 FLT1P17948 1338 aa12.86□□□□□ -0.35
SF3B3-204ENST00000563739 MAPK4P31152 587 aa12.85□□□□□ -0.35
SF3B3-204ENST00000563739 IRX3P78415 501 aaPredicted RBP12.85□□□□□ -0.35
SF3B3-204ENST00000563739 MAP2K5Q13163 448 aa12.85□□□□□ -0.35
SF3B3-204ENST00000563739 MTX1Q13505 466 aa12.85□□□□□ -0.35
SF3B3-204ENST00000563739 SHHQ15465 462 aa12.85□□□□□ -0.35
SF3B3-204ENST00000563739 PLEKHH3Q7Z736 793 aa12.85□□□□□ -0.35
SF3B3-204ENST00000563739 TEX11Q8IYF3 940 aa12.85□□□□□ -0.35
SF3B3-204ENST00000563739 SPATA5Q8NB90 893 aa12.85□□□□□ -0.35
SF3B3-204ENST00000563739 CHD7Q9P2D1 2997 aa12.85□□□□□ -0.35
SF3B3-204ENST00000563739 NAV1Q8NEY1 1877 aa12.85□□□□□ -0.35
SF3B3-204ENST00000563739 MAP4K4O95819 1239 aaPredicted RBP12.84□□□□□ -0.35
SF3B3-204ENST00000563739 HOXC6P09630 235 aa12.84□□□□□ -0.35
SF3B3-204ENST00000563739 CYBAP13498 195 aa12.84□□□□□ -0.35
SF3B3-204ENST00000563739 RGS2P41220 211 aa12.84□□□□□ -0.35
SF3B3-204ENST00000563739 RTP1P59025 263 aa12.84□□□□□ -0.35
SF3B3-204ENST00000563739 SLFN5Q08AF3 891 aa12.84□□□□□ -0.35
SF3B3-204ENST00000563739 SNX17Q15036 470 aa12.84□□□□□ -0.35
SF3B3-204ENST00000563739 SPTY2D1Q68D10 685 aaPredicted RBP12.84□□□□□ -0.35
SF3B3-204ENST00000563739 SLF2Q8IX21 1173 aa12.84□□□□□ -0.35
SF3B3-204ENST00000563739 USP38Q8NB14 1042 aa12.84□□□□□ -0.35
SF3B3-204ENST00000563739 MYLIPQ8WY64 445 aa12.84□□□□□ -0.35
SF3B3-204ENST00000563739 C12orf42Q96LP6 360 aa12.84□□□□□ -0.35
SF3B3-204ENST00000563739 PAGR1Q9BTK6 254 aa12.84□□□□□ -0.35
SF3B3-204ENST00000563739 SEMA6BQ9H3T3 888 aa12.84□□□□□ -0.35
SF3B3-204ENST00000563739 BTBD7Q9P203 1132 aa12.84□□□□□ -0.35
SF3B3-204ENST00000563739 NDUFB9Q9Y6M9 179 aa12.84□□□□□ -0.35
SF3B3-204ENST00000563739 COL11A1P12107 1806 aaPredicted RBP12.83□□□□□ -0.35
SF3B3-204ENST00000563739 ASNSP08243 561 aa12.83□□□□□ -0.36
SF3B3-204ENST00000563739 ITGB8P26012 769 aa12.83□□□□□ -0.36
SF3B3-204ENST00000563739 ATN1P54259 1190 aaPredicted RBP12.83□□□□□ -0.36
SF3B3-204ENST00000563739 EPHB4P54760 987 aa12.83□□□□□ -0.36
SF3B3-204ENST00000563739 GRB14Q14449 540 aa12.83□□□□□ -0.36
SF3B3-204ENST00000563739 MVPQ14764 893 aaKnown RBP12.83□□□□□ -0.36
SF3B3-204ENST00000563739 ALDH1L2Q3SY69 923 aa12.83□□□□□ -0.36
SF3B3-204ENST00000563739 SH3RF1Q7Z6J0 888 aa12.83□□□□□ -0.36
SF3B3-204ENST00000563739 MAPKAPK5Q8IW41 473 aa12.83□□□□□ -0.36
SF3B3-204ENST00000563739 TRMT44Q8IYL2 757 aaKnown RBP12.83□□□□□ -0.36
SF3B3-204ENST00000563739 TRMT2AQ8IZ69 625 aaKnown RBP12.83□□□□□ -0.36
SF3B3-204ENST00000563739 MAFAQ8NHW3 353 aaPredicted RBP12.83□□□□□ -0.36
SF3B3-204ENST00000563739 CDCA7LQ96GN5 454 aa12.83□□□□□ -0.36
SF3B3-204ENST00000563739 SENP6Q9GZR1 1112 aaPredicted RBP12.83□□□□□ -0.36
SF3B3-204ENST00000563739 AS3MTQ9HBK9 375 aa12.83□□□□□ -0.36
SF3B3-204ENST00000563739 PDLIM7Q9NR12 457 aa12.83□□□□□ -0.36
SF3B3-204ENST00000563739 DDX20Q9UHI6 824 aaKnown RBP12.83□□□□□ -0.36
SF3B3-204ENST00000563739 TNNQ9UQP3 1299 aa12.83□□□□□ -0.36
SF3B3-204ENST00000563739 SMCHD1A6NHR9 2005 aa12.83□□□□□ -0.36
SF3B3-204ENST00000563739 USP17L10C9JJH3 530 aa12.82□□□□□ -0.36
SF3B3-204ENST00000563739 CYP2C19P33261 490 aa12.82□□□□□ -0.36
SF3B3-204ENST00000563739 PPP4CP60510 307 aa12.82□□□□□ -0.36
SF3B3-204ENST00000563739 EVX2Q03828 476 aa12.82□□□□□ -0.36
SF3B3-204ENST00000563739 ZNF697Q5TEC3 545 aa12.82□□□□□ -0.36
SF3B3-204ENST00000563739 FAM9BQ8IZU0 186 aa12.82□□□□□ -0.36
SF3B3-204ENST00000563739 AATFQ9NY61 560 aaKnown RBP eCLIP12.82□□□□□ -0.36
SF3B3-204ENST00000563739 PI4KBQ9UBF8 816 aa12.82□□□□□ -0.36
SF3B3-204ENST00000563739 PALD1Q9ULE6 856 aa12.82□□□□□ -0.36
SF3B3-204ENST00000563739 ZNFX1Q9P2E3 1918 aaKnown RBP12.82□□□□□ -0.36
SF3B3-204ENST00000563739 PLXNA1Q9UIW2 1896 aa12.81□□□□□ -0.36
SF3B3-204ENST00000563739 TRIM43BA6NCK2 446 aa12.81□□□□□ -0.36
SF3B3-204ENST00000563739 SPDYE16A6NNV3 312 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms