RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 UPF3BQ9BZI7 483 aaKnown RBP19.61■□□□□ 0.73
VPS4A-202ENST00000562754 ZNF287Q9HBT7 754 aa19.61■□□□□ 0.73
VPS4A-202ENST00000562754 ZSWIM6Q9HCJ5 1215 aa19.61■□□□□ 0.73
VPS4A-202ENST00000562754 PLIN4Q96Q06 1357 aa19.6■□□□□ 0.73
VPS4A-202ENST00000562754 PHF20L1A8MW92 1017 aa19.6■□□□□ 0.73
VPS4A-202ENST00000562754 RANBP6O60518 1105 aaKnown RBP19.6■□□□□ 0.73
VPS4A-202ENST00000562754 ITGBL1O95965 494 aaPredicted RBP19.6■□□□□ 0.73
VPS4A-202ENST00000562754 JAG1P78504 1218 aa19.6■□□□□ 0.73
VPS4A-202ENST00000562754 ESR2Q92731 530 aa19.6■□□□□ 0.73
VPS4A-202ENST00000562754 ZNF341Q9BYN7 854 aa19.6■□□□□ 0.73
VPS4A-202ENST00000562754 GDF11O95390 407 aa19.59■□□□□ 0.73
VPS4A-202ENST00000562754 RPS6KB1P23443 525 aa19.59■□□□□ 0.73
VPS4A-202ENST00000562754 PSMA5P28066 241 aa19.59■□□□□ 0.73
VPS4A-202ENST00000562754 PRKG1Q13976 671 aa19.59■□□□□ 0.73
VPS4A-202ENST00000562754 CERKLQ49MI3 558 aaPredicted RBP19.59■□□□□ 0.73
VPS4A-202ENST00000562754 BLOC1S2Q6QNY1 142 aa19.59■□□□□ 0.73
VPS4A-202ENST00000562754 TCEANC2Q96MN5 208 aa19.59■□□□□ 0.73
VPS4A-202ENST00000562754 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.59■□□□□ 0.73
VPS4A-202ENST00000562754 ZSWIM5Q9P217 1185 aa19.59■□□□□ 0.73
VPS4A-202ENST00000562754 ZNF112Q9UJU3 913 aa19.59■□□□□ 0.73
VPS4A-202ENST00000562754 PRC1O43663 620 aa19.58■□□□□ 0.72
VPS4A-202ENST00000562754 USP2O75604 605 aaPredicted RBP19.58■□□□□ 0.72
VPS4A-202ENST00000562754 INPP5BP32019 993 aa19.58■□□□□ 0.72
VPS4A-202ENST00000562754 NF2P35240 595 aa19.58■□□□□ 0.72
VPS4A-202ENST00000562754 TFAP4Q01664 338 aa19.58■□□□□ 0.72
VPS4A-202ENST00000562754 EXOSC10Q01780 885 aaKnown RBP19.58■□□□□ 0.72
VPS4A-202ENST00000562754 CHST3Q7LGC8 479 aa19.58■□□□□ 0.72
VPS4A-202ENST00000562754 ZNF444Q8N0Y2 327 aaPredicted RBP19.58■□□□□ 0.72
VPS4A-202ENST00000562754 TSPY2A6NKD2 308 aa19.57■□□□□ 0.72
VPS4A-202ENST00000562754 NMT2O60551 498 aa19.57■□□□□ 0.72
VPS4A-202ENST00000562754 HMGB1P09429 215 aaKnown RBP19.57■□□□□ 0.72
VPS4A-202ENST00000562754 MCM5P33992 734 aa19.57■□□□□ 0.72
VPS4A-202ENST00000562754 NT5C2P49902 561 aa19.57■□□□□ 0.72
VPS4A-202ENST00000562754 RABEP1Q15276 862 aa19.57■□□□□ 0.72
VPS4A-202ENST00000562754 MOB2Q70IA6 237 aa19.57■□□□□ 0.72
VPS4A-202ENST00000562754 RUFY3Q7L099 469 aa19.57■□□□□ 0.72
VPS4A-202ENST00000562754 DHX32Q7L7V1 743 aaKnown RBP19.57■□□□□ 0.72
VPS4A-202ENST00000562754 NEDD1Q8NHV4 660 aa19.57■□□□□ 0.72
VPS4A-202ENST00000562754 KLRG1Q96E93 195 aa19.57■□□□□ 0.72
VPS4A-202ENST00000562754 CCDC17Q96LX7 622 aa19.57■□□□□ 0.72
VPS4A-202ENST00000562754 WRNIP1Q96S55 665 aa19.57■□□□□ 0.72
VPS4A-202ENST00000562754 LRRC2Q9BYS8 371 aa19.57■□□□□ 0.72
VPS4A-202ENST00000562754 CYP46A1Q9Y6A2 500 aa19.57■□□□□ 0.72
VPS4A-202ENST00000562754 WDR19Q8NEZ3 1342 aa19.56■□□□□ 0.72
VPS4A-202ENST00000562754 IGKV6D-41A0A0C4DH26 115 aa19.56■□□□□ 0.72
VPS4A-202ENST00000562754 GH2P01242 217 aa19.56■□□□□ 0.72
VPS4A-202ENST00000562754 TSPY3P0CV98 308 aa19.56■□□□□ 0.72
VPS4A-202ENST00000562754 TSPY8P0CW00 308 aa19.56■□□□□ 0.72
VPS4A-202ENST00000562754 GUCY1A2P33402 732 aa19.56■□□□□ 0.72
VPS4A-202ENST00000562754 CAP2P40123 477 aa19.56■□□□□ 0.72
VPS4A-202ENST00000562754 ABCB5Q2M3G0 1257 aa19.56■□□□□ 0.72
VPS4A-202ENST00000562754 CLEC10AQ8IUN9 316 aa19.56■□□□□ 0.72
VPS4A-202ENST00000562754 SMC1BQ8NDV3 1235 aa19.56■□□□□ 0.72
VPS4A-202ENST00000562754 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.56■□□□□ 0.72
VPS4A-202ENST00000562754 RBM46Q8TBY0 533 aaKnown RBP19.56■□□□□ 0.72
VPS4A-202ENST00000562754 TTC14Q96N46 770 aa19.56■□□□□ 0.72
VPS4A-202ENST00000562754 ZKSCAN3Q9BRR0 538 aa19.56■□□□□ 0.72
VPS4A-202ENST00000562754 ZNF408Q9H9D4 720 aa19.56■□□□□ 0.72
VPS4A-202ENST00000562754 GPHNQ9NQX3 736 aaPredicted RBP19.56■□□□□ 0.72
VPS4A-202ENST00000562754 TSHZ2Q9NRE2 1034 aa19.56■□□□□ 0.72
VPS4A-202ENST00000562754 IL17RBQ9NRM6 502 aa19.56■□□□□ 0.72
VPS4A-202ENST00000562754 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.56■□□□□ 0.72
VPS4A-202ENST00000562754 ZBTB21Q9ULJ3 1066 aa19.56■□□□□ 0.72
VPS4A-202ENST00000562754 PASKQ96RG2 1323 aa19.55■□□□□ 0.72
VPS4A-202ENST00000562754 MPHOSPH10O00566 681 aaKnown RBP19.55■□□□□ 0.72
VPS4A-202ENST00000562754 ANGEL1Q9UNK9 670 aaKnown RBP19.55■□□□□ 0.72
VPS4A-202ENST00000562754 PHIPQ8WWQ0 1821 aa19.55■□□□□ 0.72
VPS4A-202ENST00000562754 TNKSO95271 1327 aa19.54■□□□□ 0.72
VPS4A-202ENST00000562754 PPP1R12BO60237 982 aaPredicted RBP19.54■□□□□ 0.72
VPS4A-202ENST00000562754 CTNND1O60716 968 aaKnown RBP19.54■□□□□ 0.72
VPS4A-202ENST00000562754 TOMM70O94826 608 aa19.54■□□□□ 0.72
VPS4A-202ENST00000562754 CELF2O95319 508 aaKnown RBP19.54■□□□□ 0.72
VPS4A-202ENST00000562754 NEK4P51957 841 aa19.54■□□□□ 0.72
VPS4A-202ENST00000562754 SEPT2Q15019 361 aa19.54■□□□□ 0.72
VPS4A-202ENST00000562754 SEC23AQ15436 765 aa19.54■□□□□ 0.72
VPS4A-202ENST00000562754 MAP3K11Q16584 847 aa19.54■□□□□ 0.72
VPS4A-202ENST00000562754 TMEM179Q6ZVK1 233 aa19.54■□□□□ 0.72
VPS4A-202ENST00000562754 PDRG1Q9NUG6 133 aa19.54■□□□□ 0.72
VPS4A-202ENST00000562754 TCP11L1Q9NUJ3 509 aa19.54■□□□□ 0.72
VPS4A-202ENST00000562754 MYH4Q9Y623 1939 aa19.54■□□□□ 0.72
VPS4A-202ENST00000562754 SH2B2O14492 632 aaPredicted RBP19.53■□□□□ 0.72
VPS4A-202ENST00000562754 TTLL12Q14166 644 aaPredicted RBP19.53■□□□□ 0.72
VPS4A-202ENST00000562754 NOL9Q5SY16 702 aaKnown RBP19.53■□□□□ 0.72
VPS4A-202ENST00000562754 RCSD1Q6JBY9 416 aa19.53■□□□□ 0.72
VPS4A-202ENST00000562754 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.53■□□□□ 0.72
VPS4A-202ENST00000562754 SCYL3Q8IZE3 742 aa19.53■□□□□ 0.72
VPS4A-202ENST00000562754 ENAHQ8N8S7 591 aaPredicted RBP19.53■□□□□ 0.72
VPS4A-202ENST00000562754 IGDCC4Q8TDY8 1250 aa19.53■□□□□ 0.72
VPS4A-202ENST00000562754 ZKSCAN4Q969J2 545 aaPredicted RBP19.53■□□□□ 0.72
VPS4A-202ENST00000562754 CEP95Q96GE4 821 aa19.53■□□□□ 0.72
VPS4A-202ENST00000562754 ZSCAN10Q96SZ4 725 aaPredicted RBP19.53■□□□□ 0.72
VPS4A-202ENST00000562754 UBAC1Q9BSL1 405 aa19.53■□□□□ 0.72
VPS4A-202ENST00000562754 SENP2Q9HC62 589 aa19.53■□□□□ 0.72
VPS4A-202ENST00000562754 IFIT3O14879 490 aaKnown RBP19.52■□□□□ 0.72
VPS4A-202ENST00000562754 IREB2P48200 963 aaKnown RBP19.52■□□□□ 0.72
VPS4A-202ENST00000562754 MAP3K9P80192 1104 aa19.52■□□□□ 0.72
VPS4A-202ENST00000562754 TOB2Q14106 344 aaPredicted RBP19.52■□□□□ 0.72
VPS4A-202ENST00000562754 VGLL4Q14135 290 aa19.52■□□□□ 0.72
VPS4A-202ENST00000562754 TMEM67Q5HYA8 995 aa19.52■□□□□ 0.72
VPS4A-202ENST00000562754 CST9Q5W186 159 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms