RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 KLF18A0A0U1RQI7 1052 aa16.34■□□□□ 0.21
CLK3-209ENST00000562670 SHTN1A0MZ66 631 aa16.34■□□□□ 0.21
CLK3-209ENST00000562670 CLRN2A0PK11 232 aa16.34■□□□□ 0.21
CLK3-209ENST00000562670 DDTLA6NHG4 134 aaPredicted RBP16.34■□□□□ 0.21
CLK3-209ENST00000562670 GOLGA8BA8MQT2 603 aa16.34■□□□□ 0.21
CLK3-209ENST00000562670 SHMT1P34896 483 aa16.34■□□□□ 0.21
CLK3-209ENST00000562670 PPP2R5BQ15173 497 aa16.34■□□□□ 0.21
CLK3-209ENST00000562670 NBPF9Q3BBW0 867 aa16.34■□□□□ 0.21
CLK3-209ENST00000562670 PPP4R3BQ5MIZ7 849 aa16.34■□□□□ 0.21
CLK3-209ENST00000562670 ZFPM1Q8IX07 1006 aa16.34■□□□□ 0.21
CLK3-209ENST00000562670 ZNF444Q8N0Y2 327 aaPredicted RBP16.34■□□□□ 0.21
CLK3-209ENST00000562670 SLC44A5Q8NCS7 719 aa16.34■□□□□ 0.21
CLK3-209ENST00000562670 CCDC17Q96LX7 622 aa16.34■□□□□ 0.21
CLK3-209ENST00000562670 GPHNQ9NQX3 736 aaPredicted RBP16.34■□□□□ 0.21
CLK3-209ENST00000562670 BRPF3Q9ULD4 1205 aa16.34■□□□□ 0.21
CLK3-209ENST00000562670 SRCAPQ6ZRS2 3230 aa16.33■□□□□ 0.21
CLK3-209ENST00000562670 CCDC69A6NI79 296 aa16.33■□□□□ 0.2
CLK3-209ENST00000562670 DHX16O60231 1041 aaKnown RBP16.33■□□□□ 0.2
CLK3-209ENST00000562670 TSPY3P0CV98 308 aa16.33■□□□□ 0.2
CLK3-209ENST00000562670 TSPY8P0CW00 308 aa16.33■□□□□ 0.2
CLK3-209ENST00000562670 PDIA4P13667 645 aaKnown RBP16.33■□□□□ 0.2
CLK3-209ENST00000562670 TFAP4Q01664 338 aa16.33■□□□□ 0.2
CLK3-209ENST00000562670 TCP10Q12799 353 aa16.33■□□□□ 0.2
CLK3-209ENST00000562670 TATDN1Q6P1N9 297 aa16.33■□□□□ 0.2
CLK3-209ENST00000562670 CCDC83Q8IWF9 413 aa16.33■□□□□ 0.2
CLK3-209ENST00000562670 DNAJC18Q9H819 358 aa16.33■□□□□ 0.2
CLK3-209ENST00000562670 CHMP5Q9NZZ3 219 aa16.33■□□□□ 0.2
CLK3-209ENST00000562670 PGAP2Q9UHJ9 254 aa16.33■□□□□ 0.2
CLK3-209ENST00000562670 HPS5Q9UPZ3 1129 aa16.33■□□□□ 0.2
CLK3-209ENST00000562670 PITPNM2Q9BZ72 1349 aa16.33■□□□□ 0.2
CLK3-209ENST00000562670 IGKV6D-41A0A0C4DH26 115 aa16.32■□□□□ 0.2
CLK3-209ENST00000562670 TCP10L2B9ZVM9 353 aa16.32■□□□□ 0.2
CLK3-209ENST00000562670 ZBTB43O43298 467 aa16.32■□□□□ 0.2
CLK3-209ENST00000562670 TBC1D12O60347 775 aa16.32■□□□□ 0.2
CLK3-209ENST00000562670 DDAH1O94760 285 aa16.32■□□□□ 0.2
CLK3-209ENST00000562670 EGFRP00533 1210 aa16.32■□□□□ 0.2
CLK3-209ENST00000562670 LMOD1P29536 600 aaPredicted RBP16.32■□□□□ 0.2
CLK3-209ENST00000562670 MAP3K10Q02779 954 aa16.32■□□□□ 0.2
CLK3-209ENST00000562670 SCRN1Q12765 414 aa16.32■□□□□ 0.2
CLK3-209ENST00000562670 SLC4A8Q2Y0W8 1093 aa16.32■□□□□ 0.2
CLK3-209ENST00000562670 IFIT1BQ5T764 474 aaKnown RBP16.32■□□□□ 0.2
CLK3-209ENST00000562670 APOBEC3FQ8IUX4 373 aaKnown RBP16.32■□□□□ 0.2
CLK3-209ENST00000562670 ZSCAN29Q8IWY8 852 aaPredicted RBP16.32■□□□□ 0.2
CLK3-209ENST00000562670 STK11IPQ8N1F8 1099 aa16.32■□□□□ 0.2
CLK3-209ENST00000562670 CSRNP1Q96S65 589 aa16.32■□□□□ 0.2
CLK3-209ENST00000562670 MAP3K14Q99558 947 aa16.32■□□□□ 0.2
CLK3-209ENST00000562670 LARP6Q9BRS8 491 aaKnown RBP16.32■□□□□ 0.2
CLK3-209ENST00000562670 VEZTQ9HBM0 779 aa16.32■□□□□ 0.2
CLK3-209ENST00000562670 ADARB2Q9NS39 739 aaKnown RBP16.32■□□□□ 0.2
CLK3-209ENST00000562670 PPP2R3BQ9Y5P8 575 aa16.32■□□□□ 0.2
CLK3-209ENST00000562670 SLC12A7Q9Y666 1083 aa16.32■□□□□ 0.2
CLK3-209ENST00000562670 WDR90Q96KV7 1748 aa16.31■□□□□ 0.2
CLK3-209ENST00000562670 CALM1P0DP23 149 aa16.31■□□□□ 0.2
CLK3-209ENST00000562670 CALM2P0DP24 149 aa16.31■□□□□ 0.2
CLK3-209ENST00000562670 CALM3P0DP25 149 aa16.31■□□□□ 0.2
CLK3-209ENST00000562670 HMGN5P82970 282 aaKnown RBP16.31■□□□□ 0.2
CLK3-209ENST00000562670 FAM47AQ5JRC9 791 aa16.31■□□□□ 0.2
CLK3-209ENST00000562670 RCSD1Q6JBY9 416 aa16.31■□□□□ 0.2
CLK3-209ENST00000562670 DPY19L2Q6NUT2 758 aa16.31■□□□□ 0.2
CLK3-209ENST00000562670 SYNE3Q6ZMZ3 975 aa16.31■□□□□ 0.2
CLK3-209ENST00000562670 NFXL1Q6ZNB6 911 aa16.31■□□□□ 0.2
CLK3-209ENST00000562670 SAMD7Q7Z3H4 446 aa16.31■□□□□ 0.2
CLK3-209ENST00000562670 ZNF654Q8IZM8 581 aa16.31■□□□□ 0.2
CLK3-209ENST00000562670 CRACR2BQ8N4Y2 399 aaPredicted RBP16.31■□□□□ 0.2
CLK3-209ENST00000562670 NECAB1Q8N987 351 aa16.31■□□□□ 0.2
CLK3-209ENST00000562670 SMARCC2Q8TAQ2 1214 aa16.31■□□□□ 0.2
CLK3-209ENST00000562670 SCN4AP35499 1836 aa16.31■□□□□ 0.2
CLK3-209ENST00000562670 DDNO94850 711 aaPredicted RBP16.3■□□□□ 0.2
CLK3-209ENST00000562670 METAP2P50579 478 aaKnown RBP eCLIP16.3■□□□□ 0.2
CLK3-209ENST00000562670 TBC1D10BQ4KMP7 808 aaPredicted RBP16.3■□□□□ 0.2
CLK3-209ENST00000562670 CATIPQ7Z7H3 387 aa16.3■□□□□ 0.2
CLK3-209ENST00000562670 RGS22Q8NE09 1264 aa16.3■□□□□ 0.2
CLK3-209ENST00000562670 ZKSCAN3Q9BRR0 538 aa16.3■□□□□ 0.2
CLK3-209ENST00000562670 TRIM34Q9BYJ4 488 aa16.3■□□□□ 0.2
CLK3-209ENST00000562670 SENP2Q9HC62 589 aa16.3■□□□□ 0.2
CLK3-209ENST00000562670 IL17RBQ9NRM6 502 aa16.3■□□□□ 0.2
CLK3-209ENST00000562670 SMC3Q9UQE7 1217 aa16.3■□□□□ 0.2
CLK3-209ENST00000562670 CCDC196A0A1B0GTZ2 297 aa16.29■□□□□ 0.2
CLK3-209ENST00000562670 GLTPD2A6NH11 291 aa16.29■□□□□ 0.2
CLK3-209ENST00000562670 CDKL5O76039 1030 aa16.29■□□□□ 0.2
CLK3-209ENST00000562670 NUCB2P80303 420 aa16.29■□□□□ 0.2
CLK3-209ENST00000562670 TROAPQ12815 778 aa16.29■□□□□ 0.2
CLK3-209ENST00000562670 SPRYD3Q8NCJ5 442 aa16.29■□□□□ 0.2
CLK3-209ENST00000562670 NSUN7Q8NE18 718 aaKnown RBP16.29■□□□□ 0.2
CLK3-209ENST00000562670 TRPM4Q8TD43 1214 aa16.29■□□□□ 0.2
CLK3-209ENST00000562670 HOOK2Q96ED9 719 aa16.29■□□□□ 0.2
CLK3-209ENST00000562670 TEPSINQ96N21 525 aa16.29■□□□□ 0.2
CLK3-209ENST00000562670 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.29■□□□□ 0.2
CLK3-209ENST00000562670 HACL1Q9UJ83 578 aa16.29■□□□□ 0.2
CLK3-209ENST00000562670 SYNPO2Q9UMS6 1093 aa16.29■□□□□ 0.2
CLK3-209ENST00000562670 KIF3AQ9Y496 699 aa16.29■□□□□ 0.2
CLK3-209ENST00000562670 GOLGA8AA7E2F4 631 aa16.28■□□□□ 0.2
CLK3-209ENST00000562670 AKR1B1P15121 316 aa16.28■□□□□ 0.2
CLK3-209ENST00000562670 PDCP20941 246 aa16.28■□□□□ 0.2
CLK3-209ENST00000562670 EPS15P42566 896 aa16.28■□□□□ 0.2
CLK3-209ENST00000562670 STK3Q13188 491 aa16.28■□□□□ 0.2
CLK3-209ENST00000562670 RASA3Q14644 834 aa16.28■□□□□ 0.2
CLK3-209ENST00000562670 CPLX2Q6PUV4 134 aaKnown RBP16.28■□□□□ 0.2
CLK3-209ENST00000562670 MICU3Q86XE3 530 aa16.28■□□□□ 0.2
CLK3-209ENST00000562670 TMEM39BQ9GZU3 492 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms