RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 TFAP4Q01664 338 aa15.95■□□□□ 0.14
VPS39-206ENST00000562662 SART3Q15020 963 aaKnown RBP15.95■□□□□ 0.14
VPS39-206ENST00000562662 CCDC83Q8IWF9 413 aa15.95■□□□□ 0.14
VPS39-206ENST00000562662 NECAB1Q8N987 351 aa15.95■□□□□ 0.14
VPS39-206ENST00000562662 GTF3C6Q969F1 213 aa15.95■□□□□ 0.14
VPS39-206ENST00000562662 ZSCAN10Q96SZ4 725 aaPredicted RBP15.95■□□□□ 0.14
VPS39-206ENST00000562662 UBAC1Q9BSL1 405 aa15.95■□□□□ 0.14
VPS39-206ENST00000562662 SLKQ9H2G2 1235 aaPredicted RBP15.95■□□□□ 0.14
VPS39-206ENST00000562662 PI4KBQ9UBF8 816 aa15.95■□□□□ 0.14
VPS39-206ENST00000562662 PGAP2Q9UHJ9 254 aa15.95■□□□□ 0.14
VPS39-206ENST00000562662 TAOK2Q9UL54 1235 aa15.95■□□□□ 0.14
VPS39-206ENST00000562662 PLIN4Q96Q06 1357 aa15.95■□□□□ 0.14
VPS39-206ENST00000562662 ASTN2O75129 1339 aaPredicted RBP15.94■□□□□ 0.14
VPS39-206ENST00000562662 TSPY2A6NKD2 308 aa15.94■□□□□ 0.14
VPS39-206ENST00000562662 SLURP2P0DP57 97 aa15.94■□□□□ 0.14
VPS39-206ENST00000562662 PDIA3P30101 505 aaKnown RBP15.94■□□□□ 0.14
VPS39-206ENST00000562662 STK3Q13188 491 aa15.94■□□□□ 0.14
VPS39-206ENST00000562662 WTAPQ15007 396 aa15.94■□□□□ 0.14
VPS39-206ENST00000562662 IQCA1Q86XH1 822 aa15.94■□□□□ 0.14
VPS39-206ENST00000562662 ZSCAN29Q8IWY8 852 aaPredicted RBP15.94■□□□□ 0.14
VPS39-206ENST00000562662 ZNF444Q8N0Y2 327 aaPredicted RBP15.94■□□□□ 0.14
VPS39-206ENST00000562662 ENAHQ8N8S7 591 aaPredicted RBP15.94■□□□□ 0.14
VPS39-206ENST00000562662 TCP11L1Q9NUJ3 509 aa15.94■□□□□ 0.14
VPS39-206ENST00000562662 HACL1Q9UJ83 578 aa15.94■□□□□ 0.14
VPS39-206ENST00000562662 HPS5Q9UPZ3 1129 aa15.94■□□□□ 0.14
VPS39-206ENST00000562662 ATAD5Q96QE3 1844 aa15.94■□□□□ 0.14
VPS39-206ENST00000562662 WDR90Q96KV7 1748 aa15.94■□□□□ 0.14
VPS39-206ENST00000562662 NID2Q14112 1375 aa15.93■□□□□ 0.14
VPS39-206ENST00000562662 ERICH2A1L162 156 aa15.93■□□□□ 0.14
VPS39-206ENST00000562662 NMT2O60551 498 aa15.93■□□□□ 0.14
VPS39-206ENST00000562662 TSPY3P0CV98 308 aa15.93■□□□□ 0.14
VPS39-206ENST00000562662 TSPY8P0CW00 308 aa15.93■□□□□ 0.14
VPS39-206ENST00000562662 SCRN1Q12765 414 aa15.93■□□□□ 0.14
VPS39-206ENST00000562662 FOXP4Q8IVH2 680 aaPredicted RBP15.93■□□□□ 0.14
VPS39-206ENST00000562662 NEDD1Q8NHV4 660 aa15.93■□□□□ 0.14
VPS39-206ENST00000562662 L3MBTL3Q96JM7 780 aaPredicted RBP15.93■□□□□ 0.14
VPS39-206ENST00000562662 TMEM39BQ9GZU3 492 aa15.93■□□□□ 0.14
VPS39-206ENST00000562662 IL17RBQ9NRM6 502 aa15.93■□□□□ 0.14
VPS39-206ENST00000562662 MYH6P13533 1939 aa15.92■□□□□ 0.14
VPS39-206ENST00000562662 GOLGA8BA8MQT2 603 aa15.92■□□□□ 0.14
VPS39-206ENST00000562662 AKR1B1P15121 316 aa15.92■□□□□ 0.14
VPS39-206ENST00000562662 LMOD1P29536 600 aaPredicted RBP15.92■□□□□ 0.14
VPS39-206ENST00000562662 TNNI2P48788 182 aa15.92■□□□□ 0.14
VPS39-206ENST00000562662 HIRAP54198 1017 aaPredicted RBP15.92■□□□□ 0.14
VPS39-206ENST00000562662 TNFAIP1Q13829 316 aa15.92■□□□□ 0.14
VPS39-206ENST00000562662 RCSD1Q6JBY9 416 aa15.92■□□□□ 0.14
VPS39-206ENST00000562662 TATDN1Q6P1N9 297 aa15.92■□□□□ 0.14
VPS39-206ENST00000562662 APOA5Q6Q788 366 aa15.92■□□□□ 0.14
VPS39-206ENST00000562662 CDAN1Q8IWY9 1227 aa15.92■□□□□ 0.14
VPS39-206ENST00000562662 TMTC2Q8N394 836 aa15.92■□□□□ 0.14
VPS39-206ENST00000562662 CRACR2BQ8N4Y2 399 aaPredicted RBP15.92■□□□□ 0.14
VPS39-206ENST00000562662 ANKS1AQ92625 1134 aa15.92■□□□□ 0.14
VPS39-206ENST00000562662 CSRNP1Q96S65 589 aa15.92■□□□□ 0.14
VPS39-206ENST00000562662 ADARB2Q9NS39 739 aaKnown RBP15.92■□□□□ 0.14
VPS39-206ENST00000562662 CCDC69A6NI79 296 aa15.91■□□□□ 0.14
VPS39-206ENST00000562662 FAM196BA6NMK8 535 aa15.91■□□□□ 0.14
VPS39-206ENST00000562662 RASA3Q14644 834 aa15.91■□□□□ 0.14
VPS39-206ENST00000562662 CCDC178Q5BJE1 867 aa15.91■□□□□ 0.14
VPS39-206ENST00000562662 IFIT1BQ5T764 474 aaKnown RBP15.91■□□□□ 0.14
VPS39-206ENST00000562662 DPY19L2Q6NUT2 758 aa15.91■□□□□ 0.14
VPS39-206ENST00000562662 NFXL1Q6ZNB6 911 aa15.91■□□□□ 0.14
VPS39-206ENST00000562662 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.91■□□□□ 0.14
VPS39-206ENST00000562662 CWC22Q9HCG8 908 aaKnown RBP15.91■□□□□ 0.14
VPS39-206ENST00000562662 HERC5Q9UII4 1024 aaKnown RBP15.91■□□□□ 0.14
VPS39-206ENST00000562662 NAP1L2Q9ULW6 460 aaPredicted RBP15.91■□□□□ 0.14
VPS39-206ENST00000562662 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.91■□□□□ 0.14
VPS39-206ENST00000562662 IGKV6D-41A0A0C4DH26 115 aa15.9■□□□□ 0.14
VPS39-206ENST00000562662 GLTPD2A6NH11 291 aa15.9■□□□□ 0.14
VPS39-206ENST00000562662 ZBTB43O43298 467 aa15.9■□□□□ 0.14
VPS39-206ENST00000562662 NOVP48745 357 aa15.9■□□□□ 0.14
VPS39-206ENST00000562662 CCT2P78371 535 aaKnown RBP15.9■□□□□ 0.14
VPS39-206ENST00000562662 ANGEL2Q5VTE6 544 aaKnown RBP15.9■□□□□ 0.14
VPS39-206ENST00000562662 DGKHQ86XP1 1220 aa15.9■□□□□ 0.14
VPS39-206ENST00000562662 RAB11FIP4Q86YS3 637 aa15.9■□□□□ 0.14
VPS39-206ENST00000562662 APOBEC3FQ8IUX4 373 aaKnown RBP15.9■□□□□ 0.14
VPS39-206ENST00000562662 ZNF654Q8IZM8 581 aa15.9■□□□□ 0.14
VPS39-206ENST00000562662 TEPSINQ96N21 525 aa15.9■□□□□ 0.14
VPS39-206ENST00000562662 NCOA5Q9HCD5 579 aaKnown RBP15.9■□□□□ 0.14
VPS39-206ENST00000562662 SCAF8Q9UPN6 1271 aaKnown RBP15.9■□□□□ 0.14
VPS39-206ENST00000562662 SLC12A7Q9Y666 1083 aa15.9■□□□□ 0.14
VPS39-206ENST00000562662 TBC1D12O60347 775 aa15.89■□□□□ 0.13
VPS39-206ENST00000562662 CTDNEP1O95476 244 aa15.89■□□□□ 0.13
VPS39-206ENST00000562662 METAP2P50579 478 aaKnown RBP eCLIP15.89■□□□□ 0.13
VPS39-206ENST00000562662 RCAN1P53805 252 aa15.89■□□□□ 0.13
VPS39-206ENST00000562662 MAP3K10Q02779 954 aa15.89■□□□□ 0.13
VPS39-206ENST00000562662 NSUN7Q8NE18 718 aaKnown RBP15.89■□□□□ 0.13
VPS39-206ENST00000562662 CCDC17Q96LX7 622 aa15.89■□□□□ 0.13
VPS39-206ENST00000562662 MYL10Q9BUA6 226 aa15.89■□□□□ 0.13
VPS39-206ENST00000562662 TRIM34Q9BYJ4 488 aa15.89■□□□□ 0.13
VPS39-206ENST00000562662 CIZ1Q9ULV3 898 aaPredicted RBP15.89■□□□□ 0.13
VPS39-206ENST00000562662 GOLGA8AA7E2F4 631 aa15.88■□□□□ 0.13
VPS39-206ENST00000562662 DTNBO60941 627 aa15.88■□□□□ 0.13
VPS39-206ENST00000562662 RXRAP19793 462 aa15.88■□□□□ 0.13
VPS39-206ENST00000562662 RRP1BQ14684 758 aaKnown RBP15.88■□□□□ 0.13
VPS39-206ENST00000562662 CERKLQ49MI3 558 aaPredicted RBP15.88■□□□□ 0.13
VPS39-206ENST00000562662 MICU3Q86XE3 530 aa15.88■□□□□ 0.13
VPS39-206ENST00000562662 SMARCC2Q8TAQ2 1214 aa15.88■□□□□ 0.13
VPS39-206ENST00000562662 CEP95Q96GE4 821 aa15.88■□□□□ 0.13
VPS39-206ENST00000562662 LLPHQ9BRT6 129 aaKnown RBP15.88■□□□□ 0.13
VPS39-206ENST00000562662 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms